mRNA_S-firma_F_contig104.580.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig104.580.1
Unique NamemRNA_S-firma_F_contig104.580.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig104.580.1 vs. uniprot
Match: A0A6H5KCJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.620e-8
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    4 GRKLWRQSEGLSPRTGQLCLSPRRRILGGEVNGAGI--GSSSGGEQV------DVVDWDEVRPSLTA 180
            GRKLWRQSEGLSPRTGQLCLSPRRR  GG         G  SGG+ +        +DW E+R +  A
Sbjct:  778 GRKLWRQSEGLSPRTGQLCLSPRRRGGGGXXXXXXXCGGVGSGGDWIVPFFGGGALDWGEMRTTAVA 844
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BLAST of mRNA_S-firma_F_contig104.580.1 vs. uniprot
Match: D8LHM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.000e-5
Identity = 35/75 (46.67%), Postives = 38/75 (50.67%), Query Frame = 1 
Query:    4 GRKLWRQSEGLSPRTGQLCLSPRRR-----------ILGGEVNGAGIGSS-----SGGEQVDVVDWDEVRPSLTA 180
            GRKLWRQSEGL PRTGQLCLSPRRR                  G G G       SGG     +DW E+R +  A
Sbjct:  775 GRKLWRQSEGLCPRTGQLCLSPRRRGXXXXXXXXXXXXXXXCGGVGSGGDWIVPFSGGG---ALDWGEMRTTAVA 846
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCJ2_9PHAE1.620e-853.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHM5_ECTSI1.000e-546.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig104contigS-firma_F_contig104:50651..51153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.6025946-CDS-S-firma_F_contig104:50650..511511622815572.6025946-CDS-S-firma_F_contig104:50650..51151Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 50651..51151 +
1696949425.639584-CDS-S-firma_F_contig104:50650..511511696949425.639584-CDS-S-firma_F_contig104:50650..51151Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 50651..51151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig104.580.1prot_S-firma_F_contig104.580.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig104 50651..51151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig104.580.1

>prot_S-firma_F_contig104.580.1 ID=prot_S-firma_F_contig104.580.1|Name=mRNA_S-firma_F_contig104.580.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
VGRKLWRQSEGLSPRTGQLCLSPRRRILGGEVNGAGIGSSSGGEQVDVVD
WDEVRPSLTAHQQDSQLGLLDTAVGEDRNDRSEGSSDESFADMPPTSGRS
AEEKLRIENNADLNRKNGGERGGGLHGEEGTRVGAAAAAATATAEAQGDD
VAMPTTHRGHGEGVPYG
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mRNA from alignment at S-firma_F_contig104:50651..51153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig104.580.1 ID=mRNA_S-firma_F_contig104.580.1|Name=mRNA_S-firma_F_contig104.580.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=503bp|location=Sequence derived from alignment at S-firma_F_contig104:50651..51153+ (Sphaerotrichia firma ET2_F female)
GTGGGCCGGAAGCTTTGGAGACAGTCGGAGGGCCTGTCCCCGCGCACGGG
GCAGCTCTGCCTGTCACCCCGGCGGCGAATATTGGGGGGCGAGGTGAACG
GGGCTGGGATTGGTTCCTCCTCGGGAGGTGAGCAGGTCGATGTCGTCGAC
TGGGATGAGGTGCGGCCGTCCTTGACGGCGCATCAGCAGGACAGCCAGCT
GGGCTTGTTGGATACCGCCGTTGGCGAAGACAGAAATGATCGTTCCGAGG
GCAGCAGTGACGAAAGCTTCGCCGATATGCCGCCAACGAGTGGGCGTTCC
GCGGAGGAGAAGCTGCGAATAGAGAATAACGCCGATTTGAACCGAAAAAA
TGGCGGCGAAAGAGGTGGAGGGTTGCACGGAGAAGAAGGAACAAGGGTTG
GGGCTGCAGCGGCAGCAGCAACGGCGACAGCGGAGGCGCAAGGCGACGAT
GTCGCGATGCCCACAACTCACCGAGGGCATGGCGAGGGCGTCCCATACGG
TGC
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Coding sequence (CDS) from alignment at S-firma_F_contig104:50651..51153+

>mRNA_S-firma_F_contig104.580.1 ID=mRNA_S-firma_F_contig104.580.1|Name=mRNA_S-firma_F_contig104.580.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_F_contig104:50651..51153+ (Sphaerotrichia firma ET2_F female)
GTGGGCCGGAAGCTTTGGAGACAGTCGGAGGGCCTGTCCCCGCGCACGGG
GCAGCTCTGCCTGTCACCCCGGCGGCGAATATTGGGGGGCGAGGTGAACG
GGGCTGGGATTGGTTCCTCCTCGGGAGGTGAGCAGGTCGATGTCGTCGAC
TGGGATGAGGTGCGGCCGTCCTTGACGGCGCATCAGCAGGACAGCCAGCT
GGGCTTGTTGGATACCGCCGTTGGCGAAGACAGAAATGATCGTTCCGAGG
GCAGCAGTGACGAAAGCTTCGCCGATATGCCGCCAACGAGTGGGCGTTCC
GCGGAGGAGAAGCTGCGAATAGAGAATAACGCCGATTTGAACCGAAAAAA
TGGCGGCGAAAGAGGTGGAGGGTTGCACGGAGAAGAAGGAACAAGGGTTG
GGGCTGCAGCGGCAGCAGCAACGGCGACAGCGGAGGCGCAAGGCGACGAT
GTCGCGATGCCCACAACTCACCGAGGGCATGGCGAGGGCGTCCCATACGG
TGTGGGCCGGAAGCTTTGGAGACAGTCGGAGGGCCTGTCCCCGCGCACGG
GGCAGCTCTGCCTGTCACCCCGGCGGCGAATATTGGGGGGCGAGGTGAAC
GGGGCTGGGATTGGTTCCTCCTCGGGAGGTGAGCAGGTCGATGTCGTCGA
CTGGGATGAGGTGCGGCCGTCCTTGACGGCGCATCAGCAGGACAGCCAGC
TGGGCTTGTTGGATACCGCCGTTGGCGAAGACAGAAATGATCGTTCCGAG
GGCAGCAGTGACGAAAGCTTCGCCGATATGCCGCCAACGAGTGGGCGTTC
CGCGGAGGAGAAGCTGCGAATAGAGAATAACGCCGATTTGAACCGAAAAA
ATGGCGGCGAAAGAGGTGGAGGGTTGCACGGAGAAGAAGGAACAAGGGTT
GGGGCTGCAGCGGCAGCAGCAACGGCGACAGCGGAGGCGCAAGGCGACGA
TGTCGCGATGCCCACAACTCACCGAGGGCATGGCGAGGGCGTCCCATACG
GT
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