mRNA_S-firma_F_contig10399.571.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10399.571.1
Unique NamemRNA_S-firma_F_contig10399.571.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10399.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10399contigS-firma_F_contig10399:14..896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size883
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10399.571.1prot_S-firma_F_contig10399.571.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10399 197..784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.4875407-UTR-S-firma_F_contig10399:13..1961622815572.4875407-UTR-S-firma_F_contig10399:13..196Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10399 14..196 +
1696949425.5506465-UTR-S-firma_F_contig10399:13..1961696949425.5506465-UTR-S-firma_F_contig10399:13..196Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10399 14..196 +
1622815572.5132604-UTR-S-firma_F_contig10399:784..8961622815572.5132604-UTR-S-firma_F_contig10399:784..896Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10399 785..896 +
1696949425.5692663-UTR-S-firma_F_contig10399:784..8961696949425.5692663-UTR-S-firma_F_contig10399:784..896Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10399 785..896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.5021281-CDS-S-firma_F_contig10399:196..7841622815572.5021281-CDS-S-firma_F_contig10399:196..784Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10399 197..784 +
1696949425.5601344-CDS-S-firma_F_contig10399:196..7841696949425.5601344-CDS-S-firma_F_contig10399:196..784Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10399 197..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10399.571.1

>prot_S-firma_F_contig10399.571.1 ID=prot_S-firma_F_contig10399.571.1|Name=mRNA_S-firma_F_contig10399.571.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=196bp
MYCIGGNPKSPCVRPFRKSHQMLSNKYQKPPTSLFPGGSGFLCRPGCCAH
DFGTQTYRPEKANEVYRRGSLGKKGYPTLFRQLKRRRGLGATFGHPAVTL
HRHVFLTHQTEATILGKQGYRHMKKKGLPEFLQNEGYPGGGSLRKLRGTC
TLSRQISVWGLGRSFGDPAATSSRVKLLKDTISTRPTSKDWAHQI*
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mRNA from alignment at S-firma_F_contig10399:14..896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10399.571.1 ID=mRNA_S-firma_F_contig10399.571.1|Name=mRNA_S-firma_F_contig10399.571.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=883bp|location=Sequence derived from alignment at S-firma_F_contig10399:14..896+ (Sphaerotrichia firma ET2_F female)
GTGTTGCCGACACTTTCTGCGGTGGAGCGAGCAGCGAATGGATGAATGCC
CTCCTTCGTTCCATTCAAGCTCGCTCCTGAGACTGTAGTATCACGCCAAC
TTGACAACCGAACACAAAACTAAATATCGCTGGTGGCCTCCGTCATGATT
TGATTCAACTTCGGCCTCGCTTGCATACATTTGATGTACTGTATCGGGGG
AAATCCAAAGTCACCATGTGTTCGCCCGTTCCGAAAATCGCACCAAATGC
TTTCAAACAAATACCAGAAACCCCCAACGTCGTTATTCCCAGGCGGCAGT
GGTTTTTTGTGCCGACCAGGCTGTTGCGCGCACGATTTTGGCACACAGAC
GTATCGACCGGAAAAGGCAAATGAGGTCTACCGCCGCGGCTCTCTAGGGA
AAAAAGGCTACCCCACTTTGTTCCGACAACTGAAACGTCGGCGCGGCTTG
GGCGCGACTTTTGGACACCCAGCCGTGACTCTTCACAGACATGTGTTTCT
CACACACCAAACAGAGGCAACCATTTTGGGCAAACAAGGTTACAGGCACA
TGAAAAAAAAGGGGCTTCCTGAATTCTTACAAAATGAGGGCTACCCCGGC
GGCGGCTCTCTACGAAAACTAAGGGGAACGTGTACCTTGTCCCGACAGAT
CTCGGTGTGGGGATTGGGTAGGAGCTTTGGTGACCCAGCCGCGACATCTT
CACGGGTAAAACTCTTGAAAGACACTATCTCGACCCGACCTACGTCAAAA
GATTGGGCACATCAGATCTGAAGTACGCGGGTAGTGCTTGCTTCTGGCTG
CGACGTGCTTGCTAGTGCTTGCGACGTGCAGCTGTTGACAACCCTCGATC
GACGGTTTGTAGACCATGCGGCATTCGAATATT
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Coding sequence (CDS) from alignment at S-firma_F_contig10399:14..896+

>mRNA_S-firma_F_contig10399.571.1 ID=mRNA_S-firma_F_contig10399.571.1|Name=mRNA_S-firma_F_contig10399.571.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1176bp|location=Sequence derived from alignment at S-firma_F_contig10399:14..896+ (Sphaerotrichia firma ET2_F female)
ATGTACTGTATCGGGGGAAATCCAAAGTCACCATGTGTTCGCCCGTTCCG
AAAATCGCACCAAATGCTTTCAAACAAATACCAGAAACCCCCAACGTCGT
TATTCCCAGGCGGCAGTGGTTTTTTGTGCCGACCAGGCTGTTGCGCGCAC
GATTTTGGCACACAGACGTATCGACCGGAAAAGGCAAATGAGGTCTACCG
CCGCGGCTCTCTAGGGAAAAAAGGCTACCCCACTTTGTTCCGACAACTGA
AACGTCGGCGCGGCTTGGGCGCGACTTTTGGACACCCAGCCGTGACTCTT
CACAGACATGTGTTTCTCACACACCAAACAGAGGCAACCATTTTGGGCAA
ACAAGGTTACAGGCACATGAAAAAAAAGGGGCTTCCTGAATTCTTACAAA
ATGAGGGCTACCCCGGCGGCGGCTCTCTACGAAAACTAAGGGGAACGTGT
ACCTTGTCCCGACAGATCTCGGTGTGGGGATTGGGTAGGAGCTTTGGTGA
CCCAGCCGCGACATCTTCACGGGTAAAACTCTTGAAAGACACTATCTCGA
CCCGACCTACGTCAAAAGATTGGGCACATCAGATCTGAATGTACTGTATC
GGGGGAAATCCAAAGTCACCATGTGTTCGCCCGTTCCGAAAATCGCACCA
AATGCTTTCAAACAAATACCAGAAACCCCCAACGTCGTTATTCCCAGGCG
GCAGTGGTTTTTTGTGCCGACCAGGCTGTTGCGCGCACGATTTTGGCACA
CAGACGTATCGACCGGAAAAGGCAAATGAGGTCTACCGCCGCGGCTCTCT
AGGGAAAAAAGGCTACCCCACTTTGTTCCGACAACTGAAACGTCGGCGCG
GCTTGGGCGCGACTTTTGGACACCCAGCCGTGACTCTTCACAGACATGTG
TTTCTCACACACCAAACAGAGGCAACCATTTTGGGCAAACAAGGTTACAG
GCACATGAAAAAAAAGGGGCTTCCTGAATTCTTACAAAATGAGGGCTACC
CCGGCGGCGGCTCTCTACGAAAACTAAGGGGAACGTGTACCTTGTCCCGA
CAGATCTCGGTGTGGGGATTGGGTAGGAGCTTTGGTGACCCAGCCGCGAC
ATCTTCACGGGTAAAACTCTTGAAAGACACTATCTCGACCCGACCTACGT
CAAAAGATTGGGCACATCAGATCTGA
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