mRNA_S-firma_F_contig10396.567.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10396.567.1
Unique NamemRNA_S-firma_F_contig10396.567.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10396.567.1 vs. uniprot
Match: A0A6H5K1Y5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Y5_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 2.550e-135
Identity = 230/395 (58.23%), Postives = 288/395 (72.91%), Query Frame = 1 
Query:  358 VFGEVADEVIATFETGLSEALSEDNVRTAFQQWRRLLGTPGARIIAQDRRLWVGAKRAVRQHLSSYMSERSAKEAEKVVNATADFALHFAGLSRNTAKSDQEVFEELSNKLCHLQGAAEKLWPLAMRALPLLGYEEYAASTESAIRSHVLSRITLTVAASALLGLKPREDPFLMTVIAAFSLGHLTKDVAQNMAAFFQKAVMDQDTFDQTPTDQTS--------MSPADLAGELVSDTSTCKELGYQAFDFFKMVQRALSG------IQEDDDGVAGTDPMIDVSAVSPGTTPSPQ---FSDPQKSPHELNLDGMLLRQAIWLAAAIDNEHVSLEVLIACLVVGVASCCALVGVLCWRRA-ERRGRRTTSGKGGGTVRVHGMPQRVSVEKKAKMA 1488
            VFGE ADEV+A+FET LSEALSE NVR A Q WRRLL TPG +++AQDRRLW GA++AVR++LS ++SE+SAKEA++ VNATADFALHFAGLSRN AKSD EVFEELS+KLCHLQGAAEKLWPLA+ ALPLLGY++YA   ESAIRS+ LSR+T TV+A+ LLGL PR DPFL+T+IA+FSLGHL+KDVAQNMAAFFQK ++DQ  FDQ  T Q+         +SP DLA ELV+ T TC+ELG+QAF FFK+VQRAL G      ++  D    G  P  + S       P PQ      P+++P +L L+G++LRQAIW+AA ID+++ SLEVL+ CLVVG       + V CWR   ++RGR     KG G V+++  P+     ++ K A
Sbjct:  134 VFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPGVQLLAQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRNAAKSDHEVFEELSHKLCHLQGAAEKLWPLAVLALPLLGYQDYAKKLESAIRSNALSRVTQTVSATVLLGLNPR-DPFLLTLIASFSLGHLSKDVAQNMAAFFQKVLVDQVRFDQPQTKQSLSDAEGAPLLSPVDLATELVTGTKTCQELGHQAFAFFKVVQRALEGSSPSFVVESVDVNDNGVHPSTEASTALQEGRPPPQPLQQRGPRRTPRKLKLEGIVLRQAIWVAAVIDSKYFSLEVLVVCLVVGCVLVFGSIWVCCWRGLRDKRGRPRMIKKGRGGVQLYQAPRPALAARREKTA 527
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10396.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1Y5_9PHAE2.550e-13558.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10396contigS-firma_F_contig10396:1205..4345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000280.1
Exons6
Model size1810
Cds size1239
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10396.567.1prot_S-firma_F_contig10396.567.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10396 1457..4026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.1964574-UTR-S-firma_F_contig10396:1204..14561622815572.1964574-UTR-S-firma_F_contig10396:1204..1456Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10396 1205..1456 +
1696949425.3428097-UTR-S-firma_F_contig10396:1204..14561696949425.3428097-UTR-S-firma_F_contig10396:1204..1456Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10396 1205..1456 +
1622815572.2793217-UTR-S-firma_F_contig10396:4026..43451622815572.2793217-UTR-S-firma_F_contig10396:4026..4345Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10396 4027..4345 +
1696949425.421543-UTR-S-firma_F_contig10396:4026..43451696949425.421543-UTR-S-firma_F_contig10396:4026..4345Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10396 4027..4345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.2109556-CDS-S-firma_F_contig10396:1456..18301622815572.2109556-CDS-S-firma_F_contig10396:1456..1830Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 1457..1830 +
1696949425.3533525-CDS-S-firma_F_contig10396:1456..18301696949425.3533525-CDS-S-firma_F_contig10396:1456..1830Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 1457..1830 +
1622815572.2213173-CDS-S-firma_F_contig10396:2090..21661622815572.2213173-CDS-S-firma_F_contig10396:2090..2166Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 2091..2166 +
1696949425.3626256-CDS-S-firma_F_contig10396:2090..21661696949425.3626256-CDS-S-firma_F_contig10396:2090..2166Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 2091..2166 +
1622815572.2312515-CDS-S-firma_F_contig10396:2566..26761622815572.2312515-CDS-S-firma_F_contig10396:2566..2676Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 2567..2676 +
1696949425.3735392-CDS-S-firma_F_contig10396:2566..26761696949425.3735392-CDS-S-firma_F_contig10396:2566..2676Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 2567..2676 +
1622815572.242567-CDS-S-firma_F_contig10396:2813..29191622815572.242567-CDS-S-firma_F_contig10396:2813..2919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 2814..2919 +
1696949425.3835015-CDS-S-firma_F_contig10396:2813..29191696949425.3835015-CDS-S-firma_F_contig10396:2813..2919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 2814..2919 +
1622815572.2552953-CDS-S-firma_F_contig10396:3159..33331622815572.2552953-CDS-S-firma_F_contig10396:3159..3333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 3160..3333 +
1696949425.3938007-CDS-S-firma_F_contig10396:3159..33331696949425.3938007-CDS-S-firma_F_contig10396:3159..3333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 3160..3333 +
1622815572.267701-CDS-S-firma_F_contig10396:3627..40261622815572.267701-CDS-S-firma_F_contig10396:3627..4026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 3628..4026 +
1696949425.410643-CDS-S-firma_F_contig10396:3627..40261696949425.410643-CDS-S-firma_F_contig10396:3627..4026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10396 3628..4026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10396.567.1

>prot_S-firma_F_contig10396.567.1 ID=prot_S-firma_F_contig10396.567.1|Name=mRNA_S-firma_F_contig10396.567.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=413bp
MNFVVRSMWLARFCHMSQSSRSFATCRSTRLDLRKVFGEVADEVIATFET
GLSEALSEDNVRTAFQQWRRLLGTPGARIIAQDRRLWVGAKRAVRQHLSS
YMSERSAKEAEKVVNATADFALHFAGLSRNTAKSDQEVFEELSNKLCHLQ
GAAEKLWPLAMRALPLLGYEEYAASTESAIRSHVLSRITLTVAASALLGL
KPREDPFLMTVIAAFSLGHLTKDVAQNMAAFFQKAVMDQDTFDQTPTDQT
SMSPADLAGELVSDTSTCKELGYQAFDFFKMVQRALSGIQEDDDGVAGTD
PMIDVSAVSPGTTPSPQFSDPQKSPHELNLDGMLLRQAIWLAAAIDNEHV
SLEVLIACLVVGVASCCALVGVLCWRRAERRGRRTTSGKGGGTVRVHGMP
QRVSVEKKAKMA*
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mRNA from alignment at S-firma_F_contig10396:1205..4345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10396.567.1 ID=mRNA_S-firma_F_contig10396.567.1|Name=mRNA_S-firma_F_contig10396.567.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3141bp|location=Sequence derived from alignment at S-firma_F_contig10396:1205..4345+ (Sphaerotrichia firma ET2_F female)
TGGTGTACCCTACCGCACGTCTAAAAGGATGTGGAAAGGAGGATGTGGAA
AGGGCTGCTACTGGGGTCTTCAGTGATGTGAGGGAAATTCACCTTGTACT
CCAGACAATCTGAATGTGGTGTACCCTACCGCAGGTCTGCGCTTTGGAGT
TCTTCCCAGATGGTACGGGTACCCCTGACGGCTGCCTCATCTTCCACCAG
ACTGAAATGCTCGTGAATAGTTTTCAATACAACACCAGGAACGAACAAGG
TGATGAACTTCGTTGTACGAAGTATGTGGCTAGCGCGTTTTTGCCACATG
TCCCAAAGCTCCCGTTCGTTCGCTACTTGTCGTTCAACACGTTTGGATTT
GCGAAAGGTGTTCGGCGAAGTTGCCGACGAAGTCATTGCTACTTTTGAAA
CCGGTCTCTCCGAGGCCCTATCCGAGGACAACGTTCGAACGGCGTTTCAG
CAGTGGCGTCGCCTGCTCGGCACACCCGGGGCAAGAATTATAGCACAAGA
CCGGCGGTTGTGGGTAGGCGCGAAAAGAGCAGTGCGGCAGCACCTAAGCA
GCTACATGAGCGAGAGGTCAGCGAAGGAAGCGGAGAAAGTTGTCAACGCC
ACCGCGGACTTTGCCCTACACTTCGCGTGAGTCGAGTGGATGGGAACAGT
ACGGAGTTCACGAAGGATGGTGACAGCTGCTGAGAGTGAACCGGTTTACT
TCACGCCCCCTCGGCTACCGTCTTCCACCGAACAATCTCTCGACGAGCCG
GCCAACAAACGACGGACATTGTGGAGATCGCACCGTCTCAGCCTGGCCGG
GTACCACGAGCATGGGGTGGCATCCCATCTTCTTGCAACTCATGTTTGCC
GCTGGCTTTCTGTCGTTGCTACTTCGTTGCCGGCAGGGGTTTGAGTCGGA
ACACCGCCAAGAGCGACCAGGAGGTATTCGAGGAGCTGTCGAACAAGCTC
TGTCATCTTCAGGTGTGTTCACTAGCGGTGTTGGAGTAGAGCCCAGGTCA
GTCCTGTTGTGTACGCGCCGGCGCGCAGAGGCTCGAAAAGGAATGCGTGG
CATTCGTCTGTTCCGCCCTTGAGCCTGCGACATGCGTAGATACACACGGT
TGCTGCTGTTTCTTTGCCATGCAAGTCTGCTTTGCCGTGATAGAGTTTGT
CACGTCTGTAGGACACTACCAGGAATAGCGTGCGACACATACGTAGGTTA
CAGGTCGCTGCGCTGTCGTCTGCGTGCACAATATTGATGGAATCATTTGC
GCCAGCCTTGCGACGGCAAGTACGTGCTCAAGTTTTGATTCCATTTTGGT
TTGCGTCAATTACCGTCTGCCGCTCCCGTTGTTGTATTCTAATCACCATC
ATTGTCCGTTAGGGTGCGGCAGAAAAGCTTTGGCCCTTGGCGATGCGCGC
CCTTCCCTTACTGGGGTACGAGGAGTACGCCGCAAGCACCGAGAGTGCGA
TACGATCCCACGTCTTGTCTAGGTAAGCCATATTCTTGCGAGTTTCGATA
TAGCTTAACTTCACTTCAGTTCAATCTTTTTCTCGGGAAGTCAGTCGCCT
TGATTTTGTGACGAGTCCTTGCTAATGCGTTGCCCCAAACCTGTTGCGTC
CGCACGCAGGATAACGCTGACGGTAGCGGCGAGCGCGTTGCTGGGGCTGA
AGCCTCGTGAAGACCCCTTCCTCATGACGGTTATCGCTGCTTTCTCGCTC
GGACACCTTACCAAGGTACACACAGGCCCTCTGTTGACGTTTCCTCTCGT
GGACGGAAATGCGCTAGAATATCGGCTCTGGCACGCTGTAATGCGGCTAA
ATTAATGCCCTCGCACGAACTCCGTGCCTGGCATTCCGGCGGATGGTTGC
GACATGAGGGCTCGAAAAGGACGCAGCAGCTCACCTCCACATCTGACGCA
AGCGCAATGTCAACGTCTTGATTTCTTCCGTCTGTGGCTCTCGGCGTCGC
AAAAGGATGTTGCTCAAAACATGGCTGCGTTTTTCCAGAAAGCCGTCATG
GACCAGGACACTTTCGACCAGACGCCGACCGATCAGACGTCGATGAGCCC
TGCTGACCTGGCAGGCGAGCTCGTGAGTGACACCAGCACCTGCAAAGAGC
TGGGATACCAGGCTTTCGACTTTTTCAAGGTAAGTCGCGTGTGCAAGGAA
AACGCGGCATCATTCTACCCATCTCTGCCCCTTTACCTGCGCCCCGTTAG
AAATACTTCGCTATTGTACGTAGCCGTTTCGGTACCGTAGGTTTGGGTCG
AGCTTTTCTTCGCTTTTGCAATCAGCAATCAGAGGTCGTTCTGAAGAGAA
CAGAACTGCGTAACGAACAACAACCTACCGCGTTTAAGTTTCGCGGGAAC
TCGGTTTTTGCTTCGCTCGGCCGTGTGTTGCTTGTCTTGGTCTGTCGTCC
TCCACCACTCCGCGTTCCTGCAGATGGTCCAGCGTGCCTTGTCGGGAATC
CAAGAGGACGACGATGGTGTGGCCGGAACAGATCCAATGATAGACGTGTC
TGCGGTATCGCCAGGGACTACGCCATCGCCACAGTTCTCAGACCCACAAA
AATCGCCGCACGAGCTCAACCTGGACGGCATGTTACTGCGACAAGCGATT
TGGTTGGCAGCTGCGATCGACAACGAGCACGTCTCGTTGGAGGTGCTTAT
CGCGTGTCTTGTTGTGGGGGTGGCTTCGTGTTGTGCGTTGGTAGGCGTGT
TGTGTTGGAGACGGGCCGAGAGGCGCGGACGTCGTACGACAAGCGGGAAA
GGAGGAGGAACTGTGCGAGTTCACGGGATGCCGCAGCGGGTATCGGTAGA
AAAAAAGGCGAAAATGGCTTGAAACGTAAGGATTTTGGAGATGAGGGGGC
TTTTTCTTCGAACGTCCTCCTCGGTTTGCCGGTGTGTTTGTACTTCGCAG
TGTGTACGTATGGTTGCCGCTTGCAATCGGGAAGGGCAATCGCGCCCCGA
CGCAATCTATATGGGCGTGCGGTGTGCGTCGTCGTCAGATACGCAAGAGG
TGCTGGAGAGACACATCTTCTGTTGAAGTGCAAATTAACCTACTGTAGAC
GGCGGAAAGGGTGGTAGGCGCGCGGGCTCGCTTGCGACGCGCTCTGGCCG
GGAGATTCTCTAGAATTTCGTTGCAGTCCCTACCCTTCAAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10396:1205..4345+

>mRNA_S-firma_F_contig10396.567.1 ID=mRNA_S-firma_F_contig10396.567.1|Name=mRNA_S-firma_F_contig10396.567.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2478bp|location=Sequence derived from alignment at S-firma_F_contig10396:1205..4345+ (Sphaerotrichia firma ET2_F female)
ATGAACTTCGTTGTACGAAGTATGTGGCTAGCGCGTTTTTGCCACATGTC
CCAAAGCTCCCGTTCGTTCGCTACTTGTCGTTCAACACGTTTGGATTTGC
GAAAGGTGTTCGGCGAAGTTGCCGACGAAGTCATTGCTACTTTTGAAACC
GGTCTCTCCGAGGCCCTATCCGAGGACAACGTTCGAACGGCGTTTCAGCA
GTGGCGTCGCCTGCTCGGCACACCCGGGGCAAGAATTATAGCACAAGACC
GGCGGTTGTGGGTAGGCGCGAAAAGAGCAGTGCGGCAGCACCTAAGCAGC
TACATGAGCGAGAGGTCAGCGAAGGAAGCGGAGAAAGTTGTCAACGCCAC
CGCGGACTTTGCCCTACACTTCGCATGAACTTCGTTGTACGAAGTATGTG
GCTAGCGCGTTTTTGCCACATGTCCCAAAGCTCCCGTTCGTTCGCTACTT
GTCGTTCAACACGTTTGGATTTGCGAAAGGTGTTCGGCGAAGTTGCCGAC
GAAGTCATTGCTACTTTTGAAACCGGTCTCTCCGAGGCCCTATCCGAGGA
CAACGTTCGAACGGCGTTTCAGCAGTGGCGTCGCCTGCTCGGCACACCCG
GGGCAAGAATTATAGCACAAGACCGGCGGTTGTGGGTAGGCGCGAAAAGA
GCAGTGCGGCAGCACCTAAGCAGCTACATGAGCGAGAGGTCAGCGAAGGA
AGCGGAGAAAGTTGTCAACGCCACCGCGGACTTTGCCCTACACTTCGCGG
GTTTGAGTCGGAACACCGCCAAGAGCGACCAGGAGGTATTCGAGGAGCTG
TCGAACAAGCTCTGTCATCTTCAGGGGTTTGAGTCGGAACACCGCCAAGA
GCGACCAGGAGGTATTCGAGGAGCTGTCGAACAAGCTCTGTCATCTTCAG
GGTGCGGCAGAAAAGCTTTGGCCCTTGGCGATGCGCGCCCTTCCCTTACT
GGGGTACGAGGAGTACGCCGCAAGCACCGAGAGTGCGATACGATCCCACG
TCTTGTCTAGGGTGCGGCAGAAAAGCTTTGGCCCTTGGCGATGCGCGCCC
TTCCCTTACTGGGGTACGAGGAGTACGCCGCAAGCACCGAGAGTGCGATA
CGATCCCACGTCTTGTCTAGGATAACGCTGACGGTAGCGGCGAGCGCGTT
GCTGGGGCTGAAGCCTCGTGAAGACCCCTTCCTCATGACGGTTATCGCTG
CTTTCTCGCTCGGACACCTTACCAAGGATAACGCTGACGGTAGCGGCGAG
CGCGTTGCTGGGGCTGAAGCCTCGTGAAGACCCCTTCCTCATGACGGTTA
TCGCTGCTTTCTCGCTCGGACACCTTACCAAGGATGTTGCTCAAAACATG
GCTGCGTTTTTCCAGAAAGCCGTCATGGACCAGGACACTTTCGACCAGAC
GCCGACCGATCAGACGTCGATGAGCCCTGCTGACCTGGCAGGCGAGCTCG
TGAGTGACACCAGCACCTGCAAAGAGCTGGGATACCAGGCTTTCGACTTT
TTCAAGGATGTTGCTCAAAACATGGCTGCGTTTTTCCAGAAAGCCGTCAT
GGACCAGGACACTTTCGACCAGACGCCGACCGATCAGACGTCGATGAGCC
CTGCTGACCTGGCAGGCGAGCTCGTGAGTGACACCAGCACCTGCAAAGAG
CTGGGATACCAGGCTTTCGACTTTTTCAAGATGGTCCAGCGTGCCTTGTC
GGGAATCCAAGAGGACGACGATGGTGTGGCCGGAACAGATCCAATGATAG
ACGTGTCTGCGGTATCGCCAGGGACTACGCCATCGCCACAGTTCTCAGAC
CCACAAAAATCGCCGCACGAGCTCAACCTGGACGGCATGTTACTGCGACA
AGCGATTTGGTTGGCAGCTGCGATCGACAACGAGCACGTCTCGTTGGAGG
TGCTTATCGCGTGTCTTGTTGTGGGGGTGGCTTCGTGTTGTGCGTTGGTA
GGCGTGTTGTGTTGGAGACGGGCCGAGAGGCGCGGACGTCGTACGACAAG
CGGGAAAGGAGGAGGAACTGTGCGAGTTCACGGGATGCCGCAGCGGGTAT
CGGTAGAAAAAAAGGCGAAAATGGCTTGAATGGTCCAGCGTGCCTTGTCG
GGAATCCAAGAGGACGACGATGGTGTGGCCGGAACAGATCCAATGATAGA
CGTGTCTGCGGTATCGCCAGGGACTACGCCATCGCCACAGTTCTCAGACC
CACAAAAATCGCCGCACGAGCTCAACCTGGACGGCATGTTACTGCGACAA
GCGATTTGGTTGGCAGCTGCGATCGACAACGAGCACGTCTCGTTGGAGGT
GCTTATCGCGTGTCTTGTTGTGGGGGTGGCTTCGTGTTGTGCGTTGGTAG
GCGTGTTGTGTTGGAGACGGGCCGAGAGGCGCGGACGTCGTACGACAAGC
GGGAAAGGAGGAGGAACTGTGCGAGTTCACGGGATGCCGCAGCGGGTATC
GGTAGAAAAAAAGGCGAAAATGGCTTGA
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