mRNA_S-firma_F_contig10393.563.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10393.563.1
Unique NamemRNA_S-firma_F_contig10393.563.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.000e-22
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
            PE ALKGVGP++AEQLAKLG+ +VA+LLWHLPTGMVDRR+ SRVA LVEGE+AT+LLKV
Sbjct:  193 PEDALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSRVANLVEGEVATLLLKV 251          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
            PE ALKGVGP++AEQLAKLG+ +VA+LLWHLPTGMVDRR+ S VA LVEGE+AT+LLKV
Sbjct:  123 PEDALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKV 181          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A7C4UHB0_9BACT (ATP-dependent DNA helicase RecG n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C4UHB0_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 4.400e-9
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    7 KALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIAT 162
            K + GVGP+RAE LAK+GIR+V +LL+H P   +DRRQV +++ +V GE+ +
Sbjct:    9 KMIPGVGPQRAESLAKMGIRTVNDLLFHFPRKYIDRRQVKKISEVVPGEMVS 60          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.080e-9
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   10 ALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
            ALKG+GPK    L KL IR++A+LL HLPTG +DRR+   +A    G++ T+++KV
Sbjct:   23 ALKGIGPKMCAYLEKLDIRTIADLLLHLPTGYIDRRRSCPIADAEPGDVLTLIVKV 78          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A3M1JVB7_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JVB7_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 8.240e-9
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   13 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
            L GVG + A  LA++GI  V +LLWHLPTGMVDRR   RV    +G IAT+ ++V
Sbjct:   16 LPGVGGRTAAHLARMGIARVVDLLWHLPTGMVDRRHSPRVKDAGDGVIATLTVEV 70          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A7C1WJ74_9BACT (ATP-dependent DNA helicase RecG n=1 Tax=Candidatus Fraserbacteria bacterium TaxID=2268184 RepID=A0A7C1WJ74_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 8.250e-9
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
            P +  KGVG +RA+QLAKLGI ++ +LL++LP  M DR Q+ R+A L EGE  TV
Sbjct:   73 PVRYAKGVGERRAKQLAKLGIETIEDLLFYLPRRMEDRSQIKRIAQLREGERVTV 127          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A522YQU5_9ARCH (ATP-dependent DNA helicase RecG (Fragment) n=1 Tax=Candidatus Nitrosotenuis sp. TaxID=2507556 RepID=A0A522YQU5_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 1.110e-8
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   13 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
            LKGVGP+RAEQLA+LGI +V +LL+H P    DRR +  +  L EGE  T+
Sbjct:   13 LKGVGPRRAEQLARLGITTVKDLLFHFPVRYEDRRNIRSIDSLTEGETHTI 63          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A317MV21_9GAMM (ATP-dependent DNA helicase RecG n=2 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MV21_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-8
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
            P  ALKGVGP+ AE+LAKLG+  V +LL+HLPT   DR +V  +A L  GE A V
Sbjct:   11 PLTALKGVGPRLAERLAKLGLHCVEDLLFHLPTRYQDRTRVVPIASLAAGEPAVV 65          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A552X1H6_9GAMM (ATP-dependent DNA helicase RecG n=2 Tax=Aliidiomarina TaxID=1249554 RepID=A0A552X1H6_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-8
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   13 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
            LKGVGPK AE+LAKLG+RSV ++L+HLP    DR +++ +A +  G+ ATV+  V
Sbjct:   12 LKGVGPKMAERLAKLGLRSVQDVLFHLPLRYQDRTRITPIASMRVGDHATVVADV 66          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A381P692_9ZZZZ (ATP-dependent DNA helicase RecG n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381P692_9ZZZZ)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-8
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
            P  AL G+G +RA +LAKLGIR+V +LLWH P    DR Q +   GLV+G+  TV
Sbjct:   38 PVAALPGIGGERAARLAKLGIRTVGDLLWHGPRRYEDRNQPNEAKGLVKGDTGTV 92          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN8_ECTSI1.000e-2279.66RecG-like helicase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JXY9_9PHAE1.110e-2177.97ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A7C4UHB0_9BACT4.400e-951.92ATP-dependent DNA helicase RecG n=1 Tax=bacterium ... [more]
A0A836CEI0_9STRA6.080e-950.00ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
A0A3M1JVB7_9PROT8.240e-954.55ATP-dependent DNA helicase RecG n=1 Tax=Alphaprote... [more]
A0A7C1WJ74_9BACT8.250e-954.55ATP-dependent DNA helicase RecG n=1 Tax=Candidatus... [more]
A0A522YQU5_9ARCH1.110e-854.90ATP-dependent DNA helicase RecG (Fragment) n=1 Tax... [more]
A0A317MV21_9GAMM2.110e-856.36ATP-dependent DNA helicase RecG n=2 Tax=Plasticicu... [more]
A0A552X1H6_9GAMM2.880e-852.73ATP-dependent DNA helicase RecG n=2 Tax=Aliidiomar... [more]
A0A381P692_9ZZZZ2.880e-852.73ATP-dependent DNA helicase RecG n=1 Tax=marine met... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10393contigS-firma_F_contig10393:904..1330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1117318.PRUB_04576
Preferred namerecG
PFAMsDEAD,Helicase_C,RecG_wedge
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K03655
KEGG Pathwayko03440,map03440
GOsGO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494
Evalue1.65e-08
EggNOG OGsCOG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,1RMMQ@1236|Gammaproteobacteria,2Q14R@267888|Pseudoalteromonadaceae
EC3.6.4.12
DescriptionCritical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-16_001280.1
Exons2
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.0088112-CDS-S-firma_F_contig10393:903..10221622815572.0088112-CDS-S-firma_F_contig10393:903..1022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10393 904..1022 -
1696949425.1979713-CDS-S-firma_F_contig10393:903..10221696949425.1979713-CDS-S-firma_F_contig10393:903..1022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10393 904..1022 -
1622815572.0266104-CDS-S-firma_F_contig10393:1272..13301622815572.0266104-CDS-S-firma_F_contig10393:1272..1330Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10393 1273..1330 -
1696949425.2129111-CDS-S-firma_F_contig10393:1272..13301696949425.2129111-CDS-S-firma_F_contig10393:1272..1330Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10393 1273..1330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10393.563.1prot_S-firma_F_contig10393.563.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10393 904..1330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10393.563.1

>prot_S-firma_F_contig10393.563.1 ID=prot_S-firma_F_contig10393.563.1|Name=mRNA_S-firma_F_contig10393.563.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=59bp
PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEG
EIATVLLKV
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mRNA from alignment at S-firma_F_contig10393:904..1330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10393.563.1 ID=mRNA_S-firma_F_contig10393.563.1|Name=mRNA_S-firma_F_contig10393.563.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=427bp|location=Sequence derived from alignment at S-firma_F_contig10393:904..1330- (Sphaerotrichia firma ET2_F female)
CCGGAGAAGGCGCTCAAGGGGGTGGGACCGAAGCGGGCCGAGCAGCTGGC GAAACTAGGTATCGTACCGCTTTCACAGGCGCTGTCATGGGTGGTTTGGT GGAGCGGTTTGGCTTGACGGGCTTGTGTTGTAGGGGGGGGGGGTTGGAGC GGTTGTGTTCGCAGCTGTTCCGGTGCTACGCTGGGCCTTTGTGTTGGTTG CGTGTAGGCGCTTCTACTGCTGCTGTCTGTGGGGACCCCCGAAACGGCAC CCCGGTTCGCCTGCCCGCCTAACGCCTTCTGCCTGTTCGCCGTTCGCGTC TACGAAAGGTATCCGCTCTGTGGCGAATCTGCTGTGGCACCTTCCCACGG GTATGGTAGACAGGAGGCAGGTTAGCCGCGTGGCGGGCCTCGTGGAGGGG GAGATTGCGACCGTTTTGCTCAAGGTT
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Coding sequence (CDS) from alignment at S-firma_F_contig10393:904..1330-

>mRNA_S-firma_F_contig10393.563.1 ID=mRNA_S-firma_F_contig10393.563.1|Name=mRNA_S-firma_F_contig10393.563.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=354bp|location=Sequence derived from alignment at S-firma_F_contig10393:904..1330- (Sphaerotrichia firma ET2_F female)
CCGGAGAAGGCGCTCAAGGGGGTGGGACCGAAGCGGGCCGAGCAGCTGGC
GAAACTAGCCGGAGAAGGCGCTCAAGGGGGTGGGACCGAAGCGGGCCGAG
CAGCTGGCGAAACTAGGTATCCGCTCTGTGGCGAATCTGCTGTGGCACCT
TCCCACGGGTATGGTAGACAGGAGGCAGGTTAGCCGCGTGGCGGGCCTCG
TGGAGGGGGAGATTGCGACCGTTTTGCTCAAGGTTGTATCCGCTCTGTGG
CGAATCTGCTGTGGCACCTTCCCACGGGTATGGTAGACAGGAGGCAGGTT
AGCCGCGTGGCGGGCCTCGTGGAGGGGGAGATTGCGACCGTTTTGCTCAA
GGTT
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