mRNA_S-firma_F_contig10393.563.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 1.000e-22 Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1
Query: 1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
PE ALKGVGP++AEQLAKLG+ +VA+LLWHLPTGMVDRR+ SRVA LVEGE+AT+LLKV
Sbjct: 193 PEDALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSRVANLVEGEVATLLLKV 251
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21 Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1
Query: 1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
PE ALKGVGP++AEQLAKLG+ +VA+LLWHLPTGMVDRR+ S VA LVEGE+AT+LLKV
Sbjct: 123 PEDALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKV 181
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A7C4UHB0_9BACT (ATP-dependent DNA helicase RecG n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C4UHB0_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 4.400e-9 Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 7 KALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIAT 162
K + GVGP+RAE LAK+GIR+V +LL+H P +DRRQV +++ +V GE+ +
Sbjct: 9 KMIPGVGPQRAESLAKMGIRTVNDLLFHFPRKYIDRRQVKKISEVVPGEMVS 60
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 6.080e-9 Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 10 ALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
ALKG+GPK L KL IR++A+LL HLPTG +DRR+ +A G++ T+++KV
Sbjct: 23 ALKGIGPKMCAYLEKLDIRTIADLLLHLPTGYIDRRRSCPIADAEPGDVLTLIVKV 78
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A3M1JVB7_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JVB7_9PROT) HSP 1 Score: 59.3 bits (142), Expect = 8.240e-9 Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 13 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
L GVG + A LA++GI V +LLWHLPTGMVDRR RV +G IAT+ ++V
Sbjct: 16 LPGVGGRTAAHLARMGIARVVDLLWHLPTGMVDRRHSPRVKDAGDGVIATLTVEV 70
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A7C1WJ74_9BACT (ATP-dependent DNA helicase RecG n=1 Tax=Candidatus Fraserbacteria bacterium TaxID=2268184 RepID=A0A7C1WJ74_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 8.250e-9 Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
P + KGVG +RA+QLAKLGI ++ +LL++LP M DR Q+ R+A L EGE TV
Sbjct: 73 PVRYAKGVGERRAKQLAKLGIETIEDLLFYLPRRMEDRSQIKRIAQLREGERVTV 127
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A522YQU5_9ARCH (ATP-dependent DNA helicase RecG (Fragment) n=1 Tax=Candidatus Nitrosotenuis sp. TaxID=2507556 RepID=A0A522YQU5_9ARCH) HSP 1 Score: 58.9 bits (141), Expect = 1.110e-8 Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 13 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
LKGVGP+RAEQLA+LGI +V +LL+H P DRR + + L EGE T+
Sbjct: 13 LKGVGPRRAEQLARLGITTVKDLLFHFPVRYEDRRNIRSIDSLTEGETHTI 63
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A317MV21_9GAMM (ATP-dependent DNA helicase RecG n=2 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MV21_9GAMM) HSP 1 Score: 58.2 bits (139), Expect = 2.110e-8 Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
P ALKGVGP+ AE+LAKLG+ V +LL+HLPT DR +V +A L GE A V
Sbjct: 11 PLTALKGVGPRLAERLAKLGLHCVEDLLFHLPTRYQDRTRVVPIASLAAGEPAVV 65
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A552X1H6_9GAMM (ATP-dependent DNA helicase RecG n=2 Tax=Aliidiomarina TaxID=1249554 RepID=A0A552X1H6_9GAMM) HSP 1 Score: 57.8 bits (138), Expect = 2.880e-8 Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 13 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 177
LKGVGPK AE+LAKLG+RSV ++L+HLP DR +++ +A + G+ ATV+ V
Sbjct: 12 LKGVGPKMAERLAKLGLRSVQDVLFHLPLRYQDRTRITPIASMRVGDHATVVADV 66
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A381P692_9ZZZZ (ATP-dependent DNA helicase RecG n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381P692_9ZZZZ) HSP 1 Score: 57.8 bits (138), Expect = 2.880e-8 Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 165
P AL G+G +RA +LAKLGIR+V +LLWH P DR Q + GLV+G+ TV
Sbjct: 38 PVAALPGIGGERAARLAKLGIRTVGDLLWHGPRRYEDRNQPNEAKGLVKGDTGTV 92 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10393.563.1 >prot_S-firma_F_contig10393.563.1 ID=prot_S-firma_F_contig10393.563.1|Name=mRNA_S-firma_F_contig10393.563.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=59bp PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGback to top mRNA from alignment at S-firma_F_contig10393:904..1330- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10393.563.1 ID=mRNA_S-firma_F_contig10393.563.1|Name=mRNA_S-firma_F_contig10393.563.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=427bp|location=Sequence derived from alignment at S-firma_F_contig10393:904..1330- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10393:904..1330- >mRNA_S-firma_F_contig10393.563.1 ID=mRNA_S-firma_F_contig10393.563.1|Name=mRNA_S-firma_F_contig10393.563.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=354bp|location=Sequence derived from alignment at S-firma_F_contig10393:904..1330- (Sphaerotrichia firma ET2_F female)back to top |