mRNA_S-firma_F_contig10392.562.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10392.562.1
Unique NamemRNA_S-firma_F_contig10392.562.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5K757_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K757_9PHAE)

HSP 1 Score: 475 bits (1223), Expect = 2.840e-158
Identity = 222/251 (88.45%), Postives = 236/251 (94.02%), Query Frame = -3 
Query:  121 LYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEK-VLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWRE 870
            LYP++KPVCLFDW+SCHDCLEVGAPRVSGMNVGFG +RNGEELAPMDAVTILEE PGFKVGD QHLVFQ GDDPPFYAQHL+PAEYVGKLKGMR ILFERGLLR GMTKTGGKG+K+DP LSME  VL  QKDF +V+SSLVLL+RR GGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAV VVQGYCKKAYTHALVY+ ARALGPEG+++YKKFKSHRRPTPKMWRE
Sbjct:  720 LYPEYKPVCLFDWTSCHDCLEVGAPRVSGMNVGFGQMRNGEELAPMDAVTILEECPGFKVGDTQHLVFQRGDDPPFYAQHLRPAEYVGKLKGMRQILFERGLLRAGMTKTGGKGEKNDPILSMEHHVLGEQKDFKQVESSLVLLLRRQGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVAVVQGYCKKAYTHALVYLNARALGPEGQKMYKKFKSHRRPTPKMWRE 970
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5JH47_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH47_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 1.070e-140
Identity = 191/251 (76.10%), Postives = 210/251 (83.67%), Query Frame = -3 
Query:  124 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWR 876
            T LYP+HKPV LFDWSSCHDC+EVGAP V  MN+G G VRNGEELAPMD VTILE+ P    G +QHLVF+ GDDPPF++ HL+PA+YVGKLKGMR IL+ERGLL KGM+KTGG G+K D S SME VL  QKDF EVDSSLVLLM+RHGG C+MLPKYHCE NPIEL WGRAKDWTRK C YS E LRKNVPLSFRPEKDRQAV VVQGYCKKAYTHAL+Y + R  GPEGK+ YKK+KSHRR TPK WR
Sbjct:   13 TVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRNGEELAPMDPVTILEDTPNLPAGTVQHLVFRRGDDPPFHSPHLKPAQYVGKLKGMRQILWERGLLVKGMSKTGGSGEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGGACLMLPKYHCEYNPIELVWGRAKDWTRKNCKYSLECLRKNVPLSFRPEKDRQAVSVVQGYCKKAYTHALMYRETRVQGPEGKKTYKKYKSHRRRTPKEWR 263
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5K4T8_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T8_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 2.060e-139
Identity = 191/251 (76.10%), Postives = 210/251 (83.67%), Query Frame = -3 
Query:  124 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWR 876
            T LYP+HKP  LFD SSCHDC+EVGAP V  MN+G G VRNGEELAPMD VTILE+ P    G +QHLVF+ GDDPPF++ HL+PA+YVGKLKGMR IL+ERGLL KGM+KTGG G+K D S SME VL  QKDF EVDSSLVLLM+RHGG C+MLPKYHCECNPIEL WGRAKDWTRK C YS E LRKNVPLSFRPEKDRQAV VVQGYCKKAYTHAL+Y + R  GPEGK+ YKK+KSHRRPTPK WR
Sbjct:   97 TVLYPEHKPGGLFDLSSCHDCMEVGAPSVKRMNLGVGGVRNGEELAPMDPVTILEDTPNLPAGTVQHLVFRRGDDPPFHSPHLKPAQYVGKLKGMRQILWERGLLVKGMSKTGGSGEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGGACLMLPKYHCECNPIELVWGRAKDWTRKNCKYSLECLRKNVPLSFRPEKDRQAVSVVQGYCKKAYTHALMYRETRVQGPEGKKTYKKYKSHRRPTPKEWR 347
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5JCT5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT5_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 1.650e-138
Identity = 191/251 (76.10%), Postives = 212/251 (84.46%), Query Frame = -3 
Query:  124 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWR 876
            T LYP+HKPV LFDWSSCHDC+EVGAP V  MN+G G VRNGEELAPMD VTILE+ P    G +QHLVF+ GDDPPF++ HL+PA+YVGKLKGMR IL+ERGLL KGM+KTGG G+K D S SME VL  QKDF EVDSSLVLLM+RHGG C+MLPKYHCECNPIEL WGRAKDWTRK C YS + LRKNVPLSFRPE+DRQAV VVQGYCKKAYTHAL+Y + R  GPEGK+ YKK+KSHRRPTPK WR
Sbjct:  286 TVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRNGEELAPMDPVTILEDTPNLPAGTVQHLVFRRGDDPPFHSPHLKPAQYVGKLKGMRQILWERGLLVKGMSKTGGSGEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGGACLMLPKYHCECNPIELVWGRAKDWTRKNCKYSLKCLRKNVPLSFRPEEDRQAVSVVQGYCKKAYTHALMYRETRVQGPEGKKTYKKYKSHRRPTPKEWR 536
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5JCJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ8_9PHAE)

HSP 1 Score: 412 bits (1060), Expect = 4.860e-137
Identity = 194/252 (76.98%), Postives = 212/252 (84.13%), Query Frame = -3 
Query:  121 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWRE 876
            T LYP+HKPV LFDWSSCHDCLEVGAP V  MN+G G VRNGEELAPMDAVTILE+ P    G +QHL F+ GD PPF++ HL+PAEYVGKLKGMR +L+ERGLL KGMTKTGG G+K D S SME VL  QKDF EVDSSLVLLM+RHGG C+MLPKYHCECNPIEL WGRAKDWTRK CTYS E LRKNVPLSFR EKDRQAV VVQGYCKKAYTHAL+Y + R  GPEGK+ YKK+KSHRRPTPK WR+
Sbjct:  445 TVLYPEHKPVGLFDWSSCHDCLEVGAPSVKRMNLGVGGVRNGEELAPMDAVTILEDTPKLPAGTVQHLTFRRGDPPPFHSPHLRPAEYVGKLKGMRQVLWERGLLVKGMTKTGGSGEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGGGCLMLPKYHCECNPIELVWGRAKDWTRKNCTYSLECLRKNVPLSFRSEKDRQAVSVVQGYCKKAYTHALMYRETRVEGPEGKKTYKKYKSHRRPTPKEWRQ 696
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5J9G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G0_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 7.980e-136
Identity = 188/252 (74.60%), Postives = 207/252 (82.14%), Query Frame = -3 
Query:  121 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWRE 876
            T LYPD  PV LFDWSSCHDCLEVGAP V  MN+G G VRNGEELAPMDAVTILE+ P    G +QHL F+ GD PPF++ HL+PAEYVGKLKGMR +L+ERGLL KGMTKTGG G++ D   SME VL  QKDF EVDSSLVLLM+RHGG  +MLPKYHCEC+ IEL WGRAKDWTRK CTYS E LRKNVPLSFR EKDRQAV VVQGYCKKAYTHAL+Y + R  GPEGK+ YKK+KSHRRPTPK WR+
Sbjct:   43 TVLYPDRAPVGLFDWSSCHDCLEVGAPSVKRMNLGVGGVRNGEELAPMDAVTILEDTPKLPAGTVQHLTFRRGDPPPFHSPHLRPAEYVGKLKGMRQVLWERGLLVKGMTKTGGSGEEQDLRKSMEHVLGEQKDFKEVDSSLVLLMQRHGGGYLMLPKYHCECSLIELVWGRAKDWTRKNCTYSLECLRKNVPLSFRSEKDRQAVSVVQGYCKKAYTHALMYRETRVEGPEGKKTYKKYKSHRRPTPKEWRQ 294
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5K0T7_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T7_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 4.940e-135
Identity = 193/251 (76.89%), Postives = 212/251 (84.46%), Query Frame = -3 
Query:  124 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWR 876
            T LYP+HKPV LFDWSSCHDC+EVGAP V  MN+G G VRNGEELAPMD VTILE+ P    G +QHLVF+ GDDPPF++ HL+PA+YVGKLKGMR IL+ERGLL KGM+KTGG G+K D S SME VL  QKDF EVDSSLVLLM+RHGG C+MLPKYHCECNPIEL WGRAKDWTRK C YS E LRKNVPLSFRPEKDRQAV VVQGYCKKAYTHAL+Y + R  GPEGK+ YKK+KSHRRPTPK WR
Sbjct:  674 TVLYPEHKPVGLFDWSSCHDCMEVGAPSVKRMNLGVGGVRNGEELAPMDPVTILEDTPNLPAGTVQHLVFRRGDDPPFHSPHLKPAQYVGKLKGMRQILWERGLLVKGMSKTGGSGEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGGACLMLPKYHCECNPIELVWGRAKDWTRKNCKYSLECLRKNVPLSFRPEKDRQAVSVVQGYCKKAYTHALMYRETRVQGPEGKKTYKKYKSHRRPTPKEWR 924
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5KTM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTM5_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 2.210e-123
Identity = 178/252 (70.63%), Postives = 199/252 (78.97%), Query Frame = -3 
Query:  121 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWRE 876
            T LYP+ KPV LFDWSSC DC+E GAP V  MN+G G V+N   LAP+D VTILE+ P    G IQH   + GD PPF++ +L+PAEYVGKLKGMR IL+ERGLL KGM+KTGG G+K D S SME VL  QKDF EVDSSLVLLM+RHG  C+MLPKYHCECNPIE  WGRAKDWT K CTYS E LRKNVPLSFR EK RQAV VVQGYCKKAYTHAL+Y + R  GPEGK+ YKK+KSHRRPTPK WR+
Sbjct:  276 TVLYPEQKPVDLFDWSSCDDCMEAGAPSVKRMNLGVGGVKNEGGLAPIDPVTILEDTPNPPPGTIQHFTLRRGDAPPFHSPYLRPAEYVGKLKGMRQILWERGLLVKGMSKTGGSGEKQDLSKSMEHVLGEQKDFKEVDSSLVLLMQRHGRACLMLPKYHCECNPIEFVWGRAKDWTLKNCTYSLEYLRKNVPLSFRAEKGRQAVPVVQGYCKKAYTHALMYRETRVEGPEGKKTYKKYKSHRRPTPKEWRQ 527
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5JX52_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX52_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 2.630e-120
Identity = 176/248 (70.97%), Postives = 197/248 (79.44%), Query Frame = -3 
Query:  124 YPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQGYCKKAYTHALVYVKARALGPEGKEIYKKFKSHRRPTPKMWR 867
            YP+HKPV LFDWSSCHDCLE GAP V  MNVG G  R GEE+A MDAVT+ E+ P    G IQHLVFQPGDDPP YA HL PAEYVGKLKGMR IL+ERGLL+ GM+K+GG G K D S+SME VL  QKDF EV+SSL LLM RHGG C+MLPKYHCECNPIEL WGRAKDWTRK C YS + LR+NVPLSFR E DRQAVG VQ YCKK+YTH LVY   RA+GPEG++ Y+ +KSHRRP P  ++
Sbjct:  674 YPNHKPVGLFDWSSCHDCLEEGAPTVKRMNVGHGGKRQGEEIAGMDAVTLREDTPNLGKGSIQHLVFQPGDDPPMYAPHLAPAEYVGKLKGMRQILWERGLLKDGMSKSGGSGTKQDLSMSMEHVLGEQKDFKEVESSLALLMARHGGFCIMLPKYHCECNPIELVWGRAKDWTRKHCNYSLDALRENVPLSFRVEPDRQAVGTVQAYCKKSYTHNLVYRDTRAVGPEGEKHYQTYKSHRRPAPSEYK 921
[Close]
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Match: A0A6H5L3W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W7_9PHAE)

HSP 1 Score: 324 bits (831), Expect = 1.040e-101
Identity = 155/210 (73.81%), Postives = 168/210 (80.00%), Query Frame = -3 
Query:  247 TSLYPDHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGDVRNGEELAPMDAVTILEEFPGFKVGDIQHLVFQPGDDPPFYAQHLQPAEYVGKLKGMRHILFERGLLRKGMTKTGGKGDKHDPSLSMEKVLKAQKDFAEVDSSLVLLMRRHGGVCMMLPKYHCECNPIELCWGRAKDWTRKKCTYSFEGLRKNVPLSFRPEKDRQAVGVVQG 876
            T LYP+HKPV LFDWSSCHDC+E GAP V  M++G G VRNGEELAPMD VTILE+ P    G IQHL F+ GD PPF++ HL+PAEYVGKLKGMR IL ERGLL KGM+KTGG GDK D S SME VL  QKDF EVDS LVLL++RHGG C+MLPKYHCECNPIEL WGRAKDWT K CTYS E LR NVPL FR EK RQAV VVQG
Sbjct:  589 TVLYPEHKPVGLFDWSSCHDCMEAGAPSVKRMDLGVGGVRNGEELAPMDPVTILEDTPNLPAGTIQHLTFRRGDAPPFHSPHLRPAEYVGKLKGMRQILCERGLLVKGMSKTGGSGDKKDLSKSMEHVLGEQKDFKEVDSCLVLLLQRHGGACLMLPKYHCECNPIELVWGRAKDWTCKNCTYSLECLRNNVPLRFRAEKGRQAVPVVQG 798
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10392.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K757_9PHAE2.840e-15888.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH47_9PHAE1.070e-14076.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T8_9PHAE2.060e-13976.10Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCT5_9PHAE1.650e-13876.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCJ8_9PHAE4.860e-13776.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9G0_9PHAE7.980e-13674.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T7_9PHAE4.940e-13576.89Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTM5_9PHAE2.210e-12370.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX52_9PHAE2.630e-12070.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3W7_9PHAE1.040e-10173.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10392contigS-firma_F_contig10392:216..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size923
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10392.562.1prot_S-firma_F_contig10392.562.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10392 438..1088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.8769712-UTR-S-firma_F_contig10392:215..4371622815571.8769712-UTR-S-firma_F_contig10392:215..437Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10392 216..437 +
1696949425.1094115-UTR-S-firma_F_contig10392:215..4371696949425.1094115-UTR-S-firma_F_contig10392:215..437Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10392 216..437 +
1622815571.898201-UTR-S-firma_F_contig10392:1088..11381622815571.898201-UTR-S-firma_F_contig10392:1088..1138Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10392 1089..1138 +
1696949425.1310542-UTR-S-firma_F_contig10392:1088..11381696949425.1310542-UTR-S-firma_F_contig10392:1088..1138Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10392 1089..1138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.8876598-CDS-S-firma_F_contig10392:437..10881622815571.8876598-CDS-S-firma_F_contig10392:437..1088Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10392 438..1088 +
1696949425.1188328-CDS-S-firma_F_contig10392:437..10881696949425.1188328-CDS-S-firma_F_contig10392:437..1088Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10392 438..1088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10392.562.1

>prot_S-firma_F_contig10392.562.1 ID=prot_S-firma_F_contig10392.562.1|Name=mRNA_S-firma_F_contig10392.562.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=217bp
MRVRLFAVALDYPNSLPVLLRPKAQRHVLAQAFKRVRALLARPVLRAAPT
ELDGVALAVVLGEHHADPPVPPHEQHQTRINFSEVLLRFQNFLHAQAWVV
LVAFPPRLRHALPQESPLEQDVPHPLQLPDILRRLKMLGIEGGVVPRLEH
QVLYVADFEARKLFQNRHGIHWRQLFPVSHVTEPHVHPTHPRRADLQAVM
ARRPVEEAHRLVVRIQ*
back to top

mRNA from alignment at S-firma_F_contig10392:216..1138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10392.562.1 ID=mRNA_S-firma_F_contig10392.562.1|Name=mRNA_S-firma_F_contig10392.562.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=923bp|location=Sequence derived from alignment at S-firma_F_contig10392:216..1138+ (Sphaerotrichia firma ET2_F female)
GCTCTTTATGTACATTTTCTCAGTCAAATTCCACGAAAAGAAAAATATAT
TGTGGCTACTGTACTGTACCCCACACACACCCGCCGCGTGGCTACACTAC
ACCAAACGCGCGCCTCTCTACTCCCTCCACATCTTCGGTGTCGGACGCCT
GTGGGACTTGAACTTCTTGTAGATCTCCTTGCCCTCGGGTCCAAGTGCAC
GCGCCTTTACGTACACGAGGGCATGCGTGTACGCCTTTTTGCAGTAGCCC
TGGACTACCCCAACAGCCTGCCTGTCCTTCTCCGGCCTAAAGCTCAACGG
CACGTTCTTGCGCAAGCCTTCAAACGAGTACGTGCACTTCTTGCGCGTCC
AGTCCTTCGCGCGGCCCCAACAGAGCTCGATGGGGTTGCACTCGCAGTGG
TACTTGGGGAGCATCATGCAGACCCCCCCGTGCCGCCGCATGAGCAGCAC
CAGACTAGAATCAACTTCAGCGAAGTCCTTCTGCGCTTTCAGAACTTTCT
CCATGCTCAAGCTTGGGTCGTGCTTGTCGCCTTTCCCCCCCGTCTTCGTC
ATGCCCTTCCTCAGGAGTCCCCTCTCGAACAAGATGTGCCGCATCCCCTT
CAGCTTCCCGACATACTCCGCCGGTTGAAGATGCTGGGCATAGAAGGGGG
GGTCGTCCCCCGGTTGGAACACCAAGTGTTGTATGTCGCCGACTTTGAAG
CCCGGAAACTCTTCCAGAATCGTCACGGCATCCATTGGCGCCAGCTCTTC
CCCGTTTCTCACGTCACCGAACCCCACGTTCATCCCACTCACCCTCGGCG
CGCCGACCTCCAAGCAGTCATGGCAAGACGACCAGTCGAAGAGGCACACC
GGCTTGTGGTCAGGATACAGTGAGGTCGTTCATGTGATCCAACATTTTGA
GGCCGGTCCAGTAGCCCTCCTTG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10392:216..1138+

>mRNA_S-firma_F_contig10392.562.1 ID=mRNA_S-firma_F_contig10392.562.1|Name=mRNA_S-firma_F_contig10392.562.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1302bp|location=Sequence derived from alignment at S-firma_F_contig10392:216..1138+ (Sphaerotrichia firma ET2_F female)
ATGCGTGTACGCCTTTTTGCAGTAGCCCTGGACTACCCCAACAGCCTGCC
TGTCCTTCTCCGGCCTAAAGCTCAACGGCACGTTCTTGCGCAAGCCTTCA
AACGAGTACGTGCACTTCTTGCGCGTCCAGTCCTTCGCGCGGCCCCAACA
GAGCTCGATGGGGTTGCACTCGCAGTGGTACTTGGGGAGCATCATGCAGA
CCCCCCCGTGCCGCCGCATGAGCAGCACCAGACTAGAATCAACTTCAGCG
AAGTCCTTCTGCGCTTTCAGAACTTTCTCCATGCTCAAGCTTGGGTCGTG
CTTGTCGCCTTTCCCCCCCGTCTTCGTCATGCCCTTCCTCAGGAGTCCCC
TCTCGAACAAGATGTGCCGCATCCCCTTCAGCTTCCCGACATACTCCGCC
GGTTGAAGATGCTGGGCATAGAAGGGGGGGTCGTCCCCCGGTTGGAACAC
CAAGTGTTGTATGTCGCCGACTTTGAAGCCCGGAAACTCTTCCAGAATCG
TCACGGCATCCATTGGCGCCAGCTCTTCCCCGTTTCTCACGTCACCGAAC
CCCACGTTCATCCCACTCACCCTCGGCGCGCCGACCTCCAAGCAGTCATG
GCAAGACGACCAGTCGAAGAGGCACACCGGCTTGTGGTCAGGATACAGTG
AATGCGTGTACGCCTTTTTGCAGTAGCCCTGGACTACCCCAACAGCCTGC
CTGTCCTTCTCCGGCCTAAAGCTCAACGGCACGTTCTTGCGCAAGCCTTC
AAACGAGTACGTGCACTTCTTGCGCGTCCAGTCCTTCGCGCGGCCCCAAC
AGAGCTCGATGGGGTTGCACTCGCAGTGGTACTTGGGGAGCATCATGCAG
ACCCCCCCGTGCCGCCGCATGAGCAGCACCAGACTAGAATCAACTTCAGC
GAAGTCCTTCTGCGCTTTCAGAACTTTCTCCATGCTCAAGCTTGGGTCGT
GCTTGTCGCCTTTCCCCCCCGTCTTCGTCATGCCCTTCCTCAGGAGTCCC
CTCTCGAACAAGATGTGCCGCATCCCCTTCAGCTTCCCGACATACTCCGC
CGGTTGAAGATGCTGGGCATAGAAGGGGGGGTCGTCCCCCGGTTGGAACA
CCAAGTGTTGTATGTCGCCGACTTTGAAGCCCGGAAACTCTTCCAGAATC
GTCACGGCATCCATTGGCGCCAGCTCTTCCCCGTTTCTCACGTCACCGAA
CCCCACGTTCATCCCACTCACCCTCGGCGCGCCGACCTCCAAGCAGTCAT
GGCAAGACGACCAGTCGAAGAGGCACACCGGCTTGTGGTCAGGATACAGT
GA
back to top