mRNA_S-firma_F_contig1039.559.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: D7FV51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV51_ECTSI) HSP 1 Score: 419 bits (1078), Expect = 1.480e-138 Identity = 307/434 (70.74%), Postives = 340/434 (78.34%), Query Frame = 2
Query: 104 MAELGDPLERGGSA-KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHAPRWSSCTTAEIENRTTNVAQLSSTTSDRHGS--GTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRAAAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKHAKKLREHSAAKEREVEGEAVGQLQGKGNMRRGRILIEEVDSLQEDDEQHSEMVRIPTXXXXXXXPPTLGSTKTLIASGWMEYE 1396
MAELGD L G KDVTIEMLDYDFLDKC+DP LIRAI RKLKSGEEGHYPDLVKHAE RLL EL ER+KILRMKAEPQPDEIH+AI+DLHGWE+EM + K + ++ HAP W+S TA+ + T + R GS G A+ T AI N TKKLNAYDFRAWE+Y+AD+E+ RLEKEE EEQ KTEA + AK VEQDR+RRA KREDQLRE GK R++ NLSPFEK+R A+RER KGNE+FKVKEYDEAFRCYTCSLALDD+N RV+NNRAA AH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKHAKKL EHSAAKEREVEGEA GQ+Q K + GRI IEEVD+LQE+D +HS MV IPT PPT G+ KTLIA GWME E
Sbjct: 1 MAELGDFLVGGSEKLKDVTIEMLDYDFLDKCTDPGLIRAIARKLKSGEEGHYPDLVKHAETRLLEELPQAERSKILRMKAEPQPDEIHEAISDLHGWEEEMARVPARPKENNSEEAHAPIWTSNATAQTHSTKTIEPPMLDA---RRGSDDGGLARSTGLAIEQNRTKKLNAYDFRAWERYDADKEIERLEKEELEEQRHKTEARVEAKVTVEQDRLRRATKREDQLREAGKARYQGNLSPFEKKRAAERERIKGNESFKVKEYDEAFRCYTCSLALDDSNPRVYNNRAATAHHMERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKHAKKLLEHSAAKEREVEGEAAGQMQAKFK-KPGRIFIEEVDTLQEEDGEHS-MVCIPTTSAAIA-PPTPGNQKTLIAHGWMEVE 428
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: A0A6H5KKH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKH8_9PHAE) HSP 1 Score: 251 bits (640), Expect = 4.770e-75 Identity = 211/281 (75.09%), Postives = 235/281 (83.63%), Query Frame = 2
Query: 557 AQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRAAAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKHAKKLREHSAAKEREVEGEAV-GQLQGKGNMRRGRILIEEVDSLQEDDEQHSEMVRIPTXXXXXXXPPTLGSTKTLIASGWMEYE 1396
A+ T AI N TKKL+AYDFRAWE+Y+AD+E+ RLEKEE EEQ K EA + AK VEQ+R+RRAKKREDQLRE GK R++ NLSPFEKRR A+RER KGNE+FKV+EYDEAFRCYTCSLALDD+N RV+NNRAA AH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DKHAKKL +HSAAKEREVEGEA GQ+Q K + GRILIEEVD+L+E+DE+HS MV IPT PPT G+ KTLIA GWME E
Sbjct: 14 ARSTGLAIEQNRTKKLSAYDFRAWERYDADKEIERLEKEELEEQRLKAEARVEAKVTVEQNRLRRAKKREDQLREAGKARYQGNLSPFEKRRAAERERIKGNESFKVEEYDEAFRCYTCSLALDDSNPRVYNNRAATAHHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKHAKKLLKHSAAKEREVEGEAAAGQMQAKLK-KPGRILIEEVDTLKEEDEEHS-MVCIPTTSAAIA-PPTPGNQKTLIAHGWMEVE 291
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: A0A835YMY0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMY0_9STRA) HSP 1 Score: 133 bits (334), Expect = 4.370e-30 Identity = 97/283 (34.28%), Postives = 156/283 (55.12%), Query Frame = 2
Query: 104 MAELGDPLERGGSA-----KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHA---PRWSSCTTAEIENRTTNVAQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRA-KKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLAL 925
MA++ D L G KDVT+EMLDYDF+D C D L+R I+R+LKSG +GHY L KHAE+RLL L ER +++ M+ P DE+ A L W D + + K+ GQ R PR+ C + N + + T GS + + P +++++ YDF+AWE+++ D A L+KEE++ + +K+RVE+++ ++ + R+ ++ +G LS ++R +++RER KGNE F+ +E ++A+ YT S+AL
Sbjct: 1 MADIDDILASGSYGASSKDKDVTVEMLDYDFVDSCQDIQLLRGIIRRLKSGRDGHYEALTKHAESRLLEVLPVKERARVVAMRTGPSADEVESAAAGLQDWHDNIQATDAEIKSRQGQGRQQVPPPRFVVCDS----NGKSEAPAPAGTRGIAVGSSSGSTPQT-------SQRISGYDFKAWEKFDPDAAEAELDKEEEQ---------LLSKSRVEREQAQQQLEARQAEMESVLRGMDVSALSAVQRRVSSERERQKGNECFRAQESEQAYVHYTRSIAL 263
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: A0A7S2R421_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R421_9STRA) HSP 1 Score: 127 bits (320), Expect = 7.540e-27 Identity = 112/312 (35.90%), Postives = 171/312 (54.81%), Query Frame = 2
Query: 104 MAELGDPLERGG-SAKDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGW------EDE------MTNASSSSKAS-----LGQQRHAPRWSSCTTAEIENRTTNVAQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFR-ENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLAL-DDTN---ARVFNNRAAAA 970
MAELGD + +G S K+VT+EM+DYD+++KC DP +RAI+ KLKSGEEG +P L +H ENRLL+ L + ER KI ++A P+PDE+ +A + L W EDE N+S +++A G+Q AP ++ AE+E ++ +P H A FR W++Y+ D E +L+ E ++ A+ +AK ++ RA++RE +L E +GR + E++S E+ R A E+ KGNE +K E +EA Y+ +LAL D+T+ + + NRA AA
Sbjct: 15 MAELGDFITQGPKSQKEVTVEMMDYDYVNKCEDPAELRAILAKLKSGEEGFFPHLNQHVENRLLSLLPEKERKKIKTLRAGPRPDEVSEAESSLGEWMRSVRAEDEHLSRQAKENSSGNARARPLPPVRGRQTKAPVRNAAAEAELEVPLVEDIEV------------PKRPAAHVYDA-------PEYFRKWDKYDVDAEEKKLDDTE----AKRMAASDAAKQAHDEKERGRARRREQEL-AELRGRLQWESMSQLERTRLAFGEKNKGNECYKAGEAEEAMAFYSRALALLDETHPEAVKCWANRAMAA 302
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: G4ZU93_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZU93_PHYSP) HSP 1 Score: 116 bits (290), Expect = 4.390e-25 Identity = 91/272 (33.46%), Postives = 141/272 (51.84%), Query Frame = 2
Query: 146 KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHAPRWSSCTTAEIENRTTNVAQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRA 961
K + +EMLDY F+++C+D D ++ I+ L+SG+E YPDL K ENR+LA L + ERTKI+RM++ P +E+ I++L W M + + K QR P ++E + A ++ S+ S K + AYDFR+WE+Y+ D+ + ++ EE R E A + +E+ RA R+ +L K E L P ++ A E+ KGN+ FK E + A YT S+A DDT+A ++ NRA
Sbjct: 15 KTIDVEMLDYGFVERCTDLDELKGILATLRSGKEWRYPDLEKATENRILAVLPERERTKIVRMRSGPSANELTTEIDELANWAAAMDLKNEALKKQTPIQRELPPVRGQKSSEDTKSSLARAPVNVDKSEEKKS----------------KAIPAYDFRSWEKYDVDKALEEID----EESERAGEQAKKQREELEK----RAAARKRELESLPKSVELEKLEPETRKLYAGYEKQKGNDCFKANELEIALLHYTRSMAYDDTDAILYANRA 262
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: A0A6A3TEZ8_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TEZ8_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.800e-24 Identity = 92/277 (33.21%), Postives = 141/277 (50.90%), Query Frame = 2
Query: 146 KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHAP-----RWSSCTTAEIENRTTNVAQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRA 961
K + +EMLDY F+++CSD D ++ I+ L+SG EG YPDL K E+R+LA L + ER KILRM++EP +E+ ++L W M + + K QR P + S T +++ +NV + S K + AYDFR+WE+Y+ D+ + ++ EE R E A + +E+ RA R+ +L K + L P ++ A E+ KGN+ FK E + A YT S+A DDT+A ++ NRA
Sbjct: 22 KTIDVEMLDYGFVERCSDLDELKGILATLRSGREGRYPDLEKATEDRILAVLPERERAKILRMRSEPSKNELTTETDELTNWAAAMDLKNEALKRQTPIQRELPPVRGQKSSEDTQSKLVRDPSNVEKSEQKKS---------------------KAIPAYDFRSWEKYDVDKALGEID----EESERAREQAKHQREELEK----RAAARKRELESLPKSVELQKLEPETRKLYAGYEKQKGNDCFKANELEVALLHYTRSMAYDDTDAILYANRA 269
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: A0A329S0A8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S0A8_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.410e-23 Identity = 88/273 (32.23%), Postives = 141/273 (51.65%), Query Frame = 2
Query: 146 KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHAPRW-SSCTTAEIENRTTNVAQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRA 961
K + +EMLDY F+++C+D D ++ I+ L+SG+EG YP L K E R+LA L D ER+KILRM++ P +E+ I++L W M + + K +R P ++ EI++ + S +A+ + TK + AYDFR+WE+Y+ D+ + +++E +E A + +RA R+ +L K E L P ++ A E+ KGN+ FK E + A YT S+A DDT+A ++ NRA
Sbjct: 20 KSIEVEMLDYGFVERCTDLDELKGILAMLRSGKEGRYPGLEKATEGRILAVLPDRERSKILRMRSGPTANELTTEIDELANWAAAMDVKNEALKRQTPIKRELPPVRGQKSSGEIQSELVRAPT-------KLTSAEKAEQKK-------TKAIPAYDFRSWEKYDVDKALEEIDQE--------SERAREQARKXXXXXXKRAAARKRELESLSKSVDLEKLQPETRKLYAGYEKQKGNDCFKANELEMALLHYTRSMAYDDTDAILYANRA 270
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: D0NYI5_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NYI5_PHYIT) HSP 1 Score: 112 bits (279), Expect = 1.610e-23 Identity = 92/279 (32.97%), Postives = 146/279 (52.33%), Query Frame = 2
Query: 146 KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHAP----RWSSCTTAEIENRTTNV---AQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRA 961
K + +EMLDY F+++C+D D ++ I+ L+SG+EG YPDL K E+R+LA + ERTKILRM++ P +E+ I+ L W M + + K +R P R SS IE R+ A+L++ D E + ++AI AYDFR+WE+Y+ D+ + ++ E E A + ++++ +RA R+ + K + L P ++ A E+ KGN+ FK E + A YT S+A DDT+A ++ NRA
Sbjct: 20 KTIDVEMLDYSFVERCTDVDELKGILAVLRSGKEGRYPDLEKATEDRILAVFPERERTKILRMRSGPTDNELTTEIDALANWAVAMNVKNEALKKQTPFKRELPPVRGRKSS-----IEMRSDLARAPAKLANVEKD------EQKMAKNAI--------PAYDFRSWEKYDVDKALEEIDHE--------GERARDQARKQQEEQEKRAASRKREFESLSKSVDLDKLQPETRKMYAGYEKQKGNDCFKANELEVALLHYTRSMAYDDTDAILYANRA 271
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: A0A833RNG1_PHYIN (Tetratricopeptide repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833RNG1_PHYIN) HSP 1 Score: 112 bits (279), Expect = 1.000e-22 Identity = 92/279 (32.97%), Postives = 146/279 (52.33%), Query Frame = 2
Query: 146 KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHAP----RWSSCTTAEIENRTTNV---AQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRA 961
K + +EMLDY F+++C+D D ++ I+ L+SG+EG YPDL K E+R+LA + ERTKILRM++ P +E+ I+ L W M + + K +R P R SS IE R+ A+L++ D E + ++AI AYDFR+WE+Y+ D+ + ++ E E A + ++++ +RA R+ + K + L P ++ A E+ KGN+ FK E + A YT S+A DDT+A ++ NRA
Sbjct: 39 KTIDVEMLDYSFVERCTDVDELKGILAVLRSGKEGRYPDLEKATEDRILAVFPERERTKILRMRSGPTDNELTTEIDALANWAVAMNVKNEALKKQTPFKRELPPVRGRKSS-----IEMRSDLARAPAKLANVEKD------EQKMAKNAI--------PAYDFRSWEKYDVDKALEEIDHE--------GERARDQARKQQEEQEKRAASRKREFESLSKSVDLDKLQPETRKMYAGYEKQKGNDCFKANELEVALLHYTRSMAYDDTDAILYANRA 290
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Match: W2PRY6_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PRY6_PHYPN) HSP 1 Score: 111 bits (277), Expect = 1.450e-22 Identity = 89/274 (32.48%), Postives = 145/274 (52.92%), Query Frame = 2
Query: 146 KDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHYPDLVKHAENRLLAELSDTERTKILRMKAEPQPDEIHKAINDLHGWEDEMTNASSSSKASLGQQRHAPRW-SSCTTAEIENRTTNV-AQLSSTTSDRHGSGTEAQPTRHAIGANGTKKLNAYDFRAWEQYNADEEVARLEKEEQEEQLRKTEAAMSAKARVEQDRIRRAKKREDQLREEGKGRFRENLSPFEKRRTADRERAKGNEAFKVKEYDEAFRCYTCSLALDDTNARVFNNRA 961
K + +EMLDY F+++C+D D ++ I+ L+SG+EG YPDL K E+R+LA L + ERTKI RM+ P +E+ I++L W M + + K +R P ++ E+++ +L+ST +A+ + K + AYDFR+WE+Y+ D+ + ++ QE + + +A M + +RA R+ +L K E L P ++ A E+ KGN+ FK E + A YT S+A DDT+A ++ NRA
Sbjct: 20 KTIDVEMLDYGFVERCTDLDELKGILAMLRSGKEGRYPDLEKATEDRILAVLPERERTKITRMRCGPTANELTTEIDELASWAAAMDVKNEALKRQTPFKRELPPVRGQKSSREMQSEWVRAPTKLASTK--------KAEQKK-------AKTIPAYDFRSWEKYDVDKALDEID---QESERAREQARMQ-----QXXXXKRAAARKRELESLSKSVDLEKLQPETRKLYAGYEKQKGNDCFKANELEMALLHYTRSMAYDDTDAILYANRA 270 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1039.559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1039.559.1 >prot_S-firma_F_contig1039.559.1 ID=prot_S-firma_F_contig1039.559.1|Name=mRNA_S-firma_F_contig1039.559.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=443bp MAELGDPLERGGSAKDVTIEMLDYDFLDKCSDPDLIRAIVRKLKSGEEGHback to top mRNA from alignment at S-firma_F_contig1039:15902..20245+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1039.559.1 ID=mRNA_S-firma_F_contig1039.559.1|Name=mRNA_S-firma_F_contig1039.559.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4344bp|location=Sequence derived from alignment at S-firma_F_contig1039:15902..20245+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1039:15902..20245+ >mRNA_S-firma_F_contig1039.559.1 ID=mRNA_S-firma_F_contig1039.559.1|Name=mRNA_S-firma_F_contig1039.559.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2658bp|location=Sequence derived from alignment at S-firma_F_contig1039:15902..20245+ (Sphaerotrichia firma ET2_F female)back to top |