mRNA_S-firma_F_contig1039.556.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1039.556.1
Unique NamemRNA_S-firma_F_contig1039.556.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1039.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1039contigS-firma_F_contig1039:95..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size497
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1039.556.1prot_S-firma_F_contig1039.556.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1039 248..547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.078346-UTR-S-firma_F_contig1039:94..2471622815571.078346-UTR-S-firma_F_contig1039:94..247Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1039 95..247 +
1696949424.2570655-UTR-S-firma_F_contig1039:94..2471696949424.2570655-UTR-S-firma_F_contig1039:94..247Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1039 95..247 +
1622815571.1002834-UTR-S-firma_F_contig1039:547..5911622815571.1002834-UTR-S-firma_F_contig1039:547..591Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1039 548..591 +
1696949424.2828743-UTR-S-firma_F_contig1039:547..5911696949424.2828743-UTR-S-firma_F_contig1039:547..591Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1039 548..591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.0893145-CDS-S-firma_F_contig1039:247..5471622815571.0893145-CDS-S-firma_F_contig1039:247..547Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1039 248..547 +
1696949424.2669766-CDS-S-firma_F_contig1039:247..5471696949424.2669766-CDS-S-firma_F_contig1039:247..547Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1039 248..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1039.556.1

>prot_S-firma_F_contig1039.556.1 ID=prot_S-firma_F_contig1039.556.1|Name=mRNA_S-firma_F_contig1039.556.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=100bp
MGRTHIASLPDTYHATHDQDQSPGQITRSMPPEVAGALPCSMYVFTYVTN
VRATCCTLKVGAGTFSFFEKTTSKNSRRPGICQHSNIHAVYKPPLLFGW*
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mRNA from alignment at S-firma_F_contig1039:95..591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1039.556.1 ID=mRNA_S-firma_F_contig1039.556.1|Name=mRNA_S-firma_F_contig1039.556.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=497bp|location=Sequence derived from alignment at S-firma_F_contig1039:95..591+ (Sphaerotrichia firma ET2_F female)
CAAGCACCGCAGGAGGAAGGTGGGGCATCAAGTAAATACAACGAGAAGAA
AAAAGCCCCGTGTTCGCCCCTCCTAAAAGTGTAGAGTCCTCTGAAAACAC
TGCAGAGTGAAGTACACGTCGTCTCGCCGTGATCAGACGGGACTGTTATC
AAAATGGGGAGAACACACATAGCTTCTCTGCCCGATACGTATCACGCAAC
TCATGATCAGGACCAATCTCCGGGGCAAATAACGCGCTCGATGCCACCTG
AAGTGGCCGGCGCGCTGCCGTGCAGTATGTACGTGTTCACGTACGTAACG
AACGTACGTGCTACTTGTTGTACACTAAAAGTAGGCGCGGGCACTTTTTC
TTTTTTCGAGAAAACCACTTCAAAAAATTCCCGGCGCCCGGGAATCTGCC
AACATTCCAACATACATGCAGTGTATAAACCCCCTCTCTTATTTGGCTGG
TAAGTTTTTCTCCTTTTGAACCACCATAATCGTGCCGTGCCCTTCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1039:95..591+

>mRNA_S-firma_F_contig1039.556.1 ID=mRNA_S-firma_F_contig1039.556.1|Name=mRNA_S-firma_F_contig1039.556.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=600bp|location=Sequence derived from alignment at S-firma_F_contig1039:95..591+ (Sphaerotrichia firma ET2_F female)
ATGGGGAGAACACACATAGCTTCTCTGCCCGATACGTATCACGCAACTCA
TGATCAGGACCAATCTCCGGGGCAAATAACGCGCTCGATGCCACCTGAAG
TGGCCGGCGCGCTGCCGTGCAGTATGTACGTGTTCACGTACGTAACGAAC
GTACGTGCTACTTGTTGTACACTAAAAGTAGGCGCGGGCACTTTTTCTTT
TTTCGAGAAAACCACTTCAAAAAATTCCCGGCGCCCGGGAATCTGCCAAC
ATTCCAACATACATGCAGTGTATAAACCCCCTCTCTTATTTGGCTGGTAA
ATGGGGAGAACACACATAGCTTCTCTGCCCGATACGTATCACGCAACTCA
TGATCAGGACCAATCTCCGGGGCAAATAACGCGCTCGATGCCACCTGAAG
TGGCCGGCGCGCTGCCGTGCAGTATGTACGTGTTCACGTACGTAACGAAC
GTACGTGCTACTTGTTGTACACTAAAAGTAGGCGCGGGCACTTTTTCTTT
TTTCGAGAAAACCACTTCAAAAAATTCCCGGCGCCCGGGAATCTGCCAAC
ATTCCAACATACATGCAGTGTATAAACCCCCTCTCTTATTTGGCTGGTAA
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