mRNA_S-firma_F_contig10389.554.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10389.554.1
Unique NamemRNA_S-firma_F_contig10389.554.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: A0A561EK06_9ACTN (Metallo-beta-lactamase superfamily protein n=2 Tax=Kitasatospora atroaurantiaca TaxID=285545 RepID=A0A561EK06_9ACTN)

HSP 1 Score: 235 bits (599), Expect = 5.440e-74
Identity = 122/237 (51.48%), Postives = 156/237 (65.82%), Query Frame = 1
Query:   34 VQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDRE--ELVDAVRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRAC--EYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEP 732
            +Q HA D +T ILR +K+VHYE  F++LLLGE R +L D+G   D     L   V E LA R     Y LLVAHTH H DH AGD  FA    + +VG S  +V+A FG+A WP G G LDLGGR L++   PGH  A ++ +D R G LL+GD  Y GRLY++D AAF+A++DR +AFC+A+PVT +LGCHIEM      +YP GTT+QP+EPPL+++VD LR LQ  L   G  P
Sbjct:   26 IQVHAYDENTLILRQNKSVHYEAPFMFLLLGEERALLLDTGATADARWFPLRRTVDELLAGRGEG--YGLLVAHTHGHGDHVAGDVQFADRPRTTIVGRSTEEVIAAFGLADWPEGLGELDLGGRVLDLIPGPGHHSAALVFHDRRTGLLLTGDSFYPGRLYVQDAAAFSATVDRLLAFCEANPVTHILGCHIEMSTTPGEDYPRGTTYQPDEPPLQMTVDQLRALQRALADAGNRP 260          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: A0A1H7MRE1_STRJI (Metallo-beta-lactamase superfamily protein n=1 Tax=Streptacidiphilus jiangxiensis TaxID=235985 RepID=A0A1H7MRE1_STRJI)

HSP 1 Score: 227 bits (578), Expect = 1.560e-70
Identity = 121/253 (47.83%), Postives = 150/253 (59.29%), Query Frame = 1
Query:    4 WVHGAAG-----EAVVQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDRE-----ELVDAVRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGR--ACEYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGG 726
            W+HG+       +  +Q HA D  T ILR +K VHYE  F++LL G  R VL D+G     E      +VD + +    R     Y LLV HTH H DH AGD  FA   D+ VV   +    A FG    PTG   +DLGGR LE  ATPGH EA V  YDP  GFLL+GD VY GRLY++D  AF  ++DR + FCD  PVT VLGCHIEM      +YP GTT+QP+EPPL+L+V HLR +++ L  +GG
Sbjct:   24 WIHGSVSSKHNTDPDIQVHAYDEHTVILRQNKAVHYEAPFLFLLFGNDRAVLIDTGATASAEFFPLRRVVDELVDGWLARHPRVDYQLLVLHTHGHSDHVAGDGQFADRPDTTVVDARLATAWAYFGFEQDPTGVARVDLGGRVLECLATPGHHEAAVTFYDPWTGFLLTGDTVYPGRLYIQDLPAFTRTVDRLIEFCDHRPVTHVLGCHIEMSTEPGVDYPVGTTYQPDEPPLQLTVTHLREIRSALDELGG 276          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: A0A1I2C4B4_9ACTN (Glyoxylase, beta-lactamase superfamily II n=1 Tax=Streptomyces alni TaxID=380248 RepID=A0A1I2C4B4_9ACTN)

HSP 1 Score: 224 bits (570), Expect = 2.300e-69
Identity = 114/240 (47.50%), Postives = 146/240 (60.83%), Query Frame = 1
Query:   34 VQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDREEL-----VDAVRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRAC--EYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEP 732
            +Q H  D  T ILR + +VH+E  FV+LLLG  R +L D+G   D         VDA  +    R     Y L+VAHTH H DH AGD  FA    + VVG  +  V A +G+  WP G   LDLG R L+V   PGH+ A V+++D R G L +GD +Y G LY+RD AAF A++DR +AFC+ HPVT VLGCHIEM       YP GTT QP+EPPL++SV  +R L+A L+ +GG P
Sbjct:   32 IQVHTYDESTLILRQNMSVHFEAPFVFLLLGAERALLLDTGATADPRHFPLRRTVDAAIDAWLARHPREGYGLVVAHTHGHGDHIAGDPQFADRPHTTVVGPDLASVTAFYGLPDWPDGAATLDLGDRVLDVLPGPGHEPAAVLLHDRRTGLLFTGDTLYPGHLYVRDLAAFTATVDRLLAFCERHPVTHVLGCHIEMTTTAGESYPRGTTHQPDEPPLQMSVAQVRALRAALREIGGRP 271          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: UPI001E347F1C (MBL fold metallo-hydrolase n=4 Tax=Kitasatospora TaxID=2063 RepID=UPI001E347F1C)

HSP 1 Score: 222 bits (565), Expect = 1.230e-68
Identity = 116/242 (47.93%), Postives = 151/242 (62.40%), Query Frame = 1
Query:   34 VQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDRE-----ELVDAVRECLAKRRTAGP--YPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRAC--EYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEP 732
            +Q H  DGDT ILR +K+VHYE  F++LL G  R +L D+G  ++         VD +     +R    P  Y LLVAHTH H DH AGD  FA    + VVG    +VV  FG+  WP G G LDLGGR L++   PGHQ A ++ +D   G L +GD  Y G LY++D AAF+A++DR +AFC+A+PVT +LGCHIEM      EYP GTT+QP+EPPL+L+V  LR L+A L +  G P
Sbjct:   35 IQVHRYDGDTVILRQNKSVHYEAPFMFLLFGAERALLLDTGATEEERFFPLRSTVDGLVAEWLERHPQAPAGYGLLVAHTHGHGDHVAGDGQFAGRPGTTVVGREQAEVVEAFGLKDWPEGLGELDLGGRVLDLIPGPGHQAAGLVFHDRSTGLLFTGDSFYPGLLYVQDAAAFSATVDRLLAFCEANPVTHILGCHIEMTTTPGEEYPRGTTYQPDEPPLQLTVGQLRTLRAVLDAAEGRP 276          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: A0A1M6Z0L7_9ACTN (Glyoxylase, beta-lactamase superfamily II n=1 Tax=Streptomyces paucisporeus TaxID=310782 RepID=A0A1M6Z0L7_9ACTN)

HSP 1 Score: 221 bits (562), Expect = 3.290e-68
Identity = 124/256 (48.44%), Postives = 153/256 (59.77%), Query Frame = 1
Query:    4 WVHGAAG-----EAVVQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDRE-----ELVDA-VRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRA--CEYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEP 732
            W+HG+       +  +Q HA D  TFILR +  +++E  F++LL G T  VL D+G     E      +VD  V E LA+    G Y LLV HTH+H DH AGD  FA   D+ VVG  +    A FG    P     +DLGGR LE  ATPGH EA V  YDP  GFLL+GD VY GRLY++D+ AF  +IDR + FCD   VT VLGCHIEM R+   +YP  T  QP+EPPLE+S DHLR + A L+ VG EP
Sbjct:   20 WIHGSPSAKHNTDPDIQVHAYDEHTFILRQNMAINFEAPFLFLLFGHTEAVLIDTGATASPEFFPVRRVVDGLVAEWLAQHPRDG-YRLLVLHTHAHGDHIAGDGQFADRPDTTVVGADLATAWAYFGFHHDPDAVARVDLGGRVLECLATPGHHEAAVTFYDPWTGFLLTGDTVYPGRLYVQDRPAFTRTIDRLIDFCDRRTVTHVLGCHIEMTRSPGVDYPIRTVHQPDEPPLEMSTDHLREIAAALREVGDEP 274          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: A0A101NQS6_9ACTN (MBL fold metallo-hydrolase n=2 Tax=Streptomyces cellostaticus TaxID=67285 RepID=A0A101NQS6_9ACTN)

HSP 1 Score: 218 bits (555), Expect = 3.530e-67
Identity = 118/255 (46.27%), Postives = 144/255 (56.47%), Query Frame = 1
Query:    4 WVHGAAG-----EAVVQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDRE-----ELVDAVRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGR--ACEYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEP 732
            W+HG+       +  +Q HA D  TFILR +  VHYE  F++LL G  R VL D+G  +  E      +VD +      R     Y LLV HTH H DH AGD  FA   D+ VVG        CFG    P     +DLGGR LE  ATPGH EA V  YDP  G LL+GD VY GRLY++D   FA SIDR + F D  PVT VLGCHIEM      +YP  TT+QP+EPPL+L+  HLR ++  L  +G +P
Sbjct:   18 WIHGSPSAKHNTDPDIQVHAYDEHTFILRQNMAVHYEAPFLFLLCGNERAVLIDTGATESAEFFPLRRVVDGLLTDWLARHPRDGYHLLVLHTHGHGDHIAGDGQFADRPDTTVVGADRATAWRCFGFDTDPDAVAAVDLGGRVLECLATPGHHEAAVTYYDPATGLLLTGDSVYPGRLYIQDVPVFARSIDRLIEFADRRPVTHVLGCHIEMTAEPGVDYPVRTTYQPDEPPLQLTPGHLRRIREALTELGDDP 272          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: A0A2C9T129_9MYCO (Lactamase_B domain-containing protein n=4 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A2C9T129_9MYCO)

HSP 1 Score: 218 bits (555), Expect = 4.100e-67
Identity = 119/259 (45.95%), Postives = 155/259 (59.85%), Query Frame = 1
Query:    4 WVHGAAG-----EAVVQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDRE-----ELVDAVREC-LAKRRTAG--PYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRAC--EYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEPI 735
            W+HG+       +  +Q +  D DT ILR +  + YE  F++LL G  R VL D+G     E      +VD + EC + +R  AG   Y LLV HTHSHDDH AGD  FA    +V+V        + FG A  P     +DLG R L+V ATPGHQ++ V  YD   G L +GD +YRGRLY+ D  AF  S+DR VAFCD+HPVT V+GCHIEM      +YP  T+FQP+EPPLE++VDHLR +Q  L+  G +P+
Sbjct:   19 WIHGSVSSKHNADPDIQIYWYDDDTAILRQNMAIDYEAPFMFLLFGCDRAVLLDTGATASSEFFPLRAVVDELIECWIGRRGGAGRQDYELLVLHTHSHDDHVAGDQQFAGRPATVLVPADKSTAWSYFGFAGEPDAVKTVDLGDRTLDVLATPGHQDSAVTFYDRATGILFTGDTIYRGRLYIVDWQAFTHSVDRLVAFCDSHPVTHVIGCHIEMTSTAGVDYPVLTSFQPDEPPLEMTVDHLRKVQTALRDAGPQPV 277          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: UPI0005130776 (MBL fold metallo-hydrolase n=1 Tax=Mycobacterium rufum TaxID=318424 RepID=UPI0005130776)

HSP 1 Score: 218 bits (554), Expect = 5.810e-67
Identity = 121/257 (47.08%), Postives = 149/257 (57.98%), Query Frame = 1
Query:    4 WVHGAAG-----EAVVQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDRE-----ELVDAVRECLAKR--RTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRA--CEYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEP 732
            W+HG+       +  VQ    D DT ILR +K ++YE  F++LL G  R  L D+G   +RE     ++VD + E   +R  RT G Y LLV HTHSH DH AGD  F    D+V+V          FG  A P+    +DLG R L+V ATPGH  A V  YDP  G L +GD +YRGRLY+ D   F  SIDR + FC  H VT VLGCHIEM      +YP  TTFQPEEPPLE++VDHLR ++A L  VG  P
Sbjct:   20 WIHGSESAKHNTDPDVQVFWYDDDTVILRQNKAINYEAPFLFLLFGHDRAALLDTGATSEREFFPLRDVVDDLIETWRRRHGRTRGRYELLVLHTHSHGDHVAGDAQFVDRPDTVLVPADKASAWDFFGFTADPSAIRTVDLGARVLDVLATPGHDAAAVTFYDPGTGILFTGDTLYRGRLYIVDWPEFTRSIDRLLDFCSTHAVTHVLGCHIEMTTTPGVDYPVRTTFQPEEPPLEMTVDHLRAVRAALHDVGPSP 276          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: A0A8J3HLJ6_9ACTN (MBL fold metallo-hydrolase n=1 Tax=Catellatospora sp. TT07R-123 TaxID=2733863 RepID=A0A8J3HLJ6_9ACTN)

HSP 1 Score: 218 bits (554), Expect = 5.990e-67
Identity = 121/252 (48.02%), Postives = 147/252 (58.33%), Query Frame = 1
Query:    4 WVHGAAGEAV-----VQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDDREEL-----VDAVRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRA--CEYPTGTTFQPEEPPLELSVDHLRCLQATLKSVG 723
            W+HG+          +Q +A D  TFILR +K VHYE  F++LL G  R VL D+G   D   +     VD + E    R     Y LLV HTH+H DH AGD  FA   D+ ++G       A FG  A P  T  LDLGGR LE  A PGH +A V  YDP  GFLL+GD VYRGRLY++D AAF  S+DR V F    PVT VLGCHIEM      +YP G ++QP+EPPLEL+V+HL  LQ  +  VG
Sbjct:   23 WIHGSTAAKYDTNPDLQVYAHDEHTFILRQNKAVHYEAPFLFLLFGADRAVLIDTGATADPAHMPLRTVVDGLVEQWLARHPRPGYRLLVVHTHAHGDHVAGDGQFAGRPDTELIGARRDAAYAFFGFDADPDRTALLDLGGRVLECLAIPGHHDASVSFYDPHTGFLLTGDTVYRGRLYVQDWAAFGRSVDRLVDFARRRPVTHVLGCHIEMTTTPGTDYPVGWSYQPDEPPLELTVEHLAQLQRAVAEVG 274          
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Match: UPI001F2FA62A (MBL fold metallo-hydrolase n=1 Tax=Antribacter sp. KLBMP9083 TaxID=2910976 RepID=UPI001F2FA62A)

HSP 1 Score: 218 bits (555), Expect = 6.070e-67
Identity = 121/256 (47.27%), Postives = 150/256 (58.59%), Query Frame = 1
Query:    4 WVHGA-----AGEAVVQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFDSGPCDD------REELVDAVRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARLEDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVMVYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGCHIEMGRAC--EYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEP 732
            W+HG      A +  +Q H    DT ILR S++V +E  F+YLL G  R  L D+G   D      RE +   V E LA+   AG Y L+VAHTHSH DH AGD   A  E ++VVG S+ DV A FG   WPT    LDLGGR LE+   PGH  A + V+DPR GFLL+GD VY GRLY  D  AF AS+D  V F DA PVT V+GCHIEM R    +YP GT +QP+E PL ++   L  ++    +  G+P
Sbjct:   10 WIHGTPRRGGAADPPLQVHHHGPDTVILRQSRSVTFEAPFLYLLFGADRAFLLDTGATQDPATFPLRETVDRLVEEWLAEHPHAG-YELVVAHTHSHRDHVAGDAQLAGRERTMVVGTSLADVQAYFGFTVWPTEVVTLDLGGRLLEITGIPGHHPASIAVFDPRTGFLLTGDTVYPGRLYGMDMPAFVASMDHLVEFADARPVTHVMGCHIEMSRTPGRDYPAGTRYQPDEAPLPMTPRQLHAVRDAAHAAAGQP 264          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10389.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A561EK06_9ACTN5.440e-7451.48Metallo-beta-lactamase superfamily protein n=2 Tax... [more]
A0A1H7MRE1_STRJI1.560e-7047.83Metallo-beta-lactamase superfamily protein n=1 Tax... [more]
A0A1I2C4B4_9ACTN2.300e-6947.50Glyoxylase, beta-lactamase superfamily II n=1 Tax=... [more]
UPI001E347F1C1.230e-6847.93MBL fold metallo-hydrolase n=4 Tax=Kitasatospora T... [more]
A0A1M6Z0L7_9ACTN3.290e-6848.44Glyoxylase, beta-lactamase superfamily II n=1 Tax=... [more]
A0A101NQS6_9ACTN3.530e-6746.27MBL fold metallo-hydrolase n=2 Tax=Streptomyces ce... [more]
A0A2C9T129_9MYCO4.100e-6745.95Lactamase_B domain-containing protein n=4 Tax=Myco... [more]
UPI00051307765.810e-6747.08MBL fold metallo-hydrolase n=1 Tax=Mycobacterium r... [more]
A0A8J3HLJ6_9ACTN5.990e-6748.02MBL fold metallo-hydrolase n=1 Tax=Catellatospora ... [more]
UPI001F2FA62A6.070e-6747.27MBL fold metallo-hydrolase n=1 Tax=Antribacter sp.... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10389contigS-firma_F_contig10389:3553..4344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog235985.BBPN01000012_gene6966
PFAMsLactamase_B
Max annot lvl201174|Actinobacteria
Evalue2.56e-71
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria,2IA0M@201174|Actinobacteria,2NEJR@228398|Streptacidiphilus
DescriptionMetallo-beta-lactamase superfamily
COG categoryS
Hectar predicted targeting categoryother localisation
Exons2
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.9705079-CDS-S-firma_F_contig10389:3552..41101622815570.9705079-CDS-S-firma_F_contig10389:3552..4110Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10389 3553..4110 +
1696949424.1695712-CDS-S-firma_F_contig10389:3552..41101696949424.1695712-CDS-S-firma_F_contig10389:3552..4110Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10389 3553..4110 +
1622815570.9876432-CDS-S-firma_F_contig10389:4167..43441622815570.9876432-CDS-S-firma_F_contig10389:4167..4344Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10389 4168..4344 +
1696949424.2126305-CDS-S-firma_F_contig10389:4167..43441696949424.2126305-CDS-S-firma_F_contig10389:4167..4344Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10389 4168..4344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10389.554.1prot_S-firma_F_contig10389.554.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10389 3553..4344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10389.554.1

>prot_S-firma_F_contig10389.554.1 ID=prot_S-firma_F_contig10389.554.1|Name=mRNA_S-firma_F_contig10389.554.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=245bp
AWVHGAAGEAVVQTHALDGDTFILRVSKTVHYEGNFVYLLLGETRGVLFD
SGPCDDREELVDAVRECLAKRRTAGPYPLLVAHTHSHDDHYAGDDVFARL
EDSVVVGHSVGDVVACFGMAAWPTGTGCLDLGGRRLEVFATPGHQEAHVM
VYDPRWGFLLSGDVVYRGRLYMRDQAAFAASIDRAVAFCDAHPVTWVLGC
HIEMGRACEYPTGTTFQPEEPPLELSVDHLRCLQATLKSVGGEPI
back to top

mRNA from alignment at S-firma_F_contig10389:3553..4344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10389.554.1 ID=mRNA_S-firma_F_contig10389.554.1|Name=mRNA_S-firma_F_contig10389.554.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=792bp|location=Sequence derived from alignment at S-firma_F_contig10389:3553..4344+ (Sphaerotrichia firma ET2_F female)
GCCTGGGTGCATGGCGCCGCGGGGGAGGCCGTGGTGCAAACCCACGCCCT GGACGGCGACACGTTCATCCTTCGGGTGTCCAAAACCGTCCACTACGAGG GCAACTTTGTGTACCTACTCCTGGGCGAAACCCGGGGGGTGCTCTTCGAC TCCGGCCCCTGCGACGACAGAGAGGAACTGGTGGATGCCGTCAGGGAGTG CTTGGCGAAGCGCCGCACTGCCGGGCCGTACCCCCTCCTCGTCGCCCACA CCCACTCCCACGACGACCACTACGCCGGCGACGATGTGTTTGCGAGGCTT GAGGACTCCGTTGTTGTCGGCCACAGCGTGGGAGACGTGGTGGCGTGCTT CGGGATGGCGGCCTGGCCGACGGGGACGGGCTGCTTGGACCTTGGCGGCC GCCGCCTGGAGGTGTTTGCCACGCCCGGCCACCAAGAGGCGCACGTCATG GTGTACGACCCCCGGTGGGGTTTCCTGCTGTCAGGGGACGTTGTGTACCG CGGGCGGCTGTACATGCGGGACCAGGCGGCGTTCGCGGCCAGCATTGACC GCGCTGTGGTGAGTTGGGGGGGTCACTGCACGCCTTTGGCAGGCGTCACC ACCCGTCGTTTTCAGGCGTTTTGCGACGCGCACCCCGTCACCTGGGTGTT GGGGTGCCACATCGAAATGGGGCGGGCGTGCGAGTACCCGACGGGGACCA CGTTTCAGCCAGAGGAGCCCCCACTGGAGCTGAGCGTGGACCACCTCCGC TGCTTGCAAGCAACACTGAAGAGTGTGGGCGGCGAGCCCATC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10389:3553..4344+

>mRNA_S-firma_F_contig10389.554.1 ID=mRNA_S-firma_F_contig10389.554.1|Name=mRNA_S-firma_F_contig10389.554.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1470bp|location=Sequence derived from alignment at S-firma_F_contig10389:3553..4344+ (Sphaerotrichia firma ET2_F female)
GCCTGGGTGCATGGCGCCGCGGGGGAGGCCGTGGTGCAAACCCACGCCCT
GGACGGCGACACGTTCATCCTTCGGGTGTCCAAAACCGTCCACTACGAGG
GCAACTTTGTGTACCTACTCCTGGGCGAAACCCGGGGGGTGCTCTTCGAC
TCCGGCCCCTGCGACGACAGAGAGGAACTGGTGGATGCCGTCAGGGAGTG
CTTGGCGAAGCGCCGCACTGCCGGGCCGTACCCCCTCCTCGTCGCCCACA
CCCACTCCCACGACGACCACTACGCCGGCGACGATGTGTTTGCGAGGCTT
GAGGACTCCGTTGTTGTCGGCCACAGCGTGGGAGACGTGGTGGCGTGCTT
CGGGATGGCGGCCTGGCCGACGGGGACGGGCTGCTTGGACCTTGGCGGCC
GCCGCCTGGAGGTGTTTGCCACGCCCGGCCACCAAGAGGCGCACGTCATG
GTGTACGACCCCCGGTGGGGTTTCCTGCTGTCAGGGGACGTTGTGTACCG
CGGGCGGCTGTACATGCGGGACCAGGCGGCGTTCGCGGCCAGCATTGACC
GCGCTGTGGCCTGGGTGCATGGCGCCGCGGGGGAGGCCGTGGTGCAAACC
CACGCCCTGGACGGCGACACGTTCATCCTTCGGGTGTCCAAAACCGTCCA
CTACGAGGGCAACTTTGTGTACCTACTCCTGGGCGAAACCCGGGGGGTGC
TCTTCGACTCCGGCCCCTGCGACGACAGAGAGGAACTGGTGGATGCCGTC
AGGGAGTGCTTGGCGAAGCGCCGCACTGCCGGGCCGTACCCCCTCCTCGT
CGCCCACACCCACTCCCACGACGACCACTACGCCGGCGACGATGTGTTTG
CGAGGCTTGAGGACTCCGTTGTTGTCGGCCACAGCGTGGGAGACGTGGTG
GCGTGCTTCGGGATGGCGGCCTGGCCGACGGGGACGGGCTGCTTGGACCT
TGGCGGCCGCCGCCTGGAGGTGTTTGCCACGCCCGGCCACCAAGAGGCGC
ACGTCATGGTGTACGACCCCCGGTGGGGTTTCCTGCTGTCAGGGGACGTT
GTGTACCGCGGGCGGCTGTACATGCGGGACCAGGCGGCGTTCGCGGCCAG
CATTGACCGCGCTGTGGCGTTTTGCGACGCGCACCCCGTCACCTGGGTGT
TGGGGTGCCACATCGAAATGGGGCGGGCGTGCGAGTACCCGACGGGGACC
ACGTTTCAGCCAGAGGAGCCCCCACTGGAGCTGAGCGTGGACCACCTCCG
CTGCTTGCAAGCAACACTGAAGAGTGTGGGCGGCGAGCCCATCGCGTTTT
GCGACGCGCACCCCGTCACCTGGGTGTTGGGGTGCCACATCGAAATGGGG
CGGGCGTGCGAGTACCCGACGGGGACCACGTTTCAGCCAGAGGAGCCCCC
ACTGGAGCTGAGCGTGGACCACCTCCGCTGCTTGCAAGCAACACTGAAGA
GTGTGGGCGGCGAGCCCATC
back to top