mRNA_S-firma_F_contig10382.548.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10382.548.1
Unique NamemRNA_S-firma_F_contig10382.548.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10382.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10382contigS-firma_F_contig10382:686..1162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44056.XP_009032470.1
Max annot lvl2759|Eukaryota
Evalue0.000613
EggNOG OGs28KVP@1|root,2QTC5@2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Model size477
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.5145903-CDS-S-firma_F_contig10382:685..11621622815570.5145903-CDS-S-firma_F_contig10382:685..1162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10382 686..1162 -
1696949423.7460928-CDS-S-firma_F_contig10382:685..11621696949423.7460928-CDS-S-firma_F_contig10382:685..1162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10382 686..1162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10382.548.1prot_S-firma_F_contig10382.548.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10382 686..1162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10382.548.1

>prot_S-firma_F_contig10382.548.1 ID=prot_S-firma_F_contig10382.548.1|Name=mRNA_S-firma_F_contig10382.548.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=159bp
MLVYFNVATATLALLRCVDVPGAEGYRLFIDASIKCVYYGWQLPLVVVGV
ALLGFPVFVWWRSERARRRRFGNELDALLYRCIGGMYVEECSYWEGVLIV
HRLAVAFLFTFVTEAPLMRSIATGTITAGVAALHALLRPLRFPATQALQL
VLLFCLSVV
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mRNA from alignment at S-firma_F_contig10382:686..1162-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10382.548.1 ID=mRNA_S-firma_F_contig10382.548.1|Name=mRNA_S-firma_F_contig10382.548.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=477bp|location=Sequence derived from alignment at S-firma_F_contig10382:686..1162- (Sphaerotrichia firma ET2_F female)
ATGTTGGTGTACTTCAACGTGGCGACGGCAACGCTGGCGCTGCTTCGGTG
TGTGGATGTGCCTGGTGCGGAGGGGTACCGGCTGTTCATCGATGCCAGCA
TCAAGTGTGTGTACTACGGGTGGCAGCTGCCCCTTGTGGTCGTGGGCGTG
GCGCTGCTGGGGTTCCCCGTGTTCGTGTGGTGGCGAAGTGAGCGGGCCCG
TCGGCGCCGCTTCGGGAACGAGCTCGACGCGTTGCTGTACCGGTGCATTG
GGGGCATGTACGTGGAGGAGTGCAGCTACTGGGAGGGCGTGCTGATCGTG
CACCGGTTGGCGGTCGCGTTCCTGTTCACGTTTGTGACGGAGGCCCCTTT
GATGCGGTCCATTGCCACTGGCACCATCACGGCTGGCGTGGCTGCCCTGC
ACGCGCTGCTCCGGCCACTACGTTTCCCGGCGACACAAGCCTTGCAGCTG
GTCCTTTTGTTCTGCCTCAGCGTTGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10382:686..1162-

>mRNA_S-firma_F_contig10382.548.1 ID=mRNA_S-firma_F_contig10382.548.1|Name=mRNA_S-firma_F_contig10382.548.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=954bp|location=Sequence derived from alignment at S-firma_F_contig10382:686..1162- (Sphaerotrichia firma ET2_F female)
ATGTTGGTGTACTTCAACGTGGCGACGGCAACGCTGGCGCTGCTTCGGTG
TGTGGATGTGCCTGGTGCGGAGGGGTACCGGCTGTTCATCGATGCCAGCA
TCAAGTGTGTGTACTACGGGTGGCAGCTGCCCCTTGTGGTCGTGGGCGTG
GCGCTGCTGGGGTTCCCCGTGTTCGTGTGGTGGCGAAGTGAGCGGGCCCG
TCGGCGCCGCTTCGGGAACGAGCTCGACGCGTTGCTGTACCGGTGCATTG
GGGGCATGTACGTGGAGGAGTGCAGCTACTGGGAGGGCGTGCTGATCGTG
CACCGGTTGGCGGTCGCGTTCCTGTTCACGTTTGTGACGGAGGCCCCTTT
GATGCGGTCCATTGCCACTGGCACCATCACGGCTGGCGTGGCTGCCCTGC
ACGCGCTGCTCCGGCCACTACGTTTCCCGGCGACACAAGCCTTGCAGCTG
GTCCTTTTGTTCTGCCTCAGCGTTGTGATGTTGGTGTACTTCAACGTGGC
GACGGCAACGCTGGCGCTGCTTCGGTGTGTGGATGTGCCTGGTGCGGAGG
GGTACCGGCTGTTCATCGATGCCAGCATCAAGTGTGTGTACTACGGGTGG
CAGCTGCCCCTTGTGGTCGTGGGCGTGGCGCTGCTGGGGTTCCCCGTGTT
CGTGTGGTGGCGAAGTGAGCGGGCCCGTCGGCGCCGCTTCGGGAACGAGC
TCGACGCGTTGCTGTACCGGTGCATTGGGGGCATGTACGTGGAGGAGTGC
AGCTACTGGGAGGGCGTGCTGATCGTGCACCGGTTGGCGGTCGCGTTCCT
GTTCACGTTTGTGACGGAGGCCCCTTTGATGCGGTCCATTGCCACTGGCA
CCATCACGGCTGGCGTGGCTGCCCTGCACGCGCTGCTCCGGCCACTACGT
TTCCCGGCGACACAAGCCTTGCAGCTGGTCCTTTTGTTCTGCCTCAGCGT
TGTG
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