mRNA_S-firma_F_contig10381.546.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: G3WIT1_SARHA (COMM domain containing 9 n=8 Tax=Metatheria TaxID=9263 RepID=G3WIT1_SARHA) HSP 1 Score: 123 bits (308), Expect = 4.620e-33 Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 25 TKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
T E + AL P + LKN ++K+ + +P W+ + A ++S+PR VDLDWRVDVK AS+ ++RM++PT L+ +K ++ AS G PA V+ ELSKE L+TML GLGRIRDQLS +
Sbjct: 61 TGEEILALFPENFHQNLKNLLTKIIMEHVPAWRKEAQANQISLPRLVDLDWRVDVKMASDSITRMAVPTCLLQMKIQEDASLCGDKPAISAVTMELSKETLDTMLDGLGRIRDQLSAV 178
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: H3B2P2_LATCH (COMM domain-containing protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B2P2_LATCH) HSP 1 Score: 122 bits (305), Expect = 2.090e-32 Identity = 55/117 (47.01%), Postives = 84/117 (71.79%), Query Frame = 1
Query: 31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTIG 381
E + L P + LKN ++K+ + ++P W++ + A ++S+P+ V++DWRVDVK +S+ +SRM++PT L+ +K +D AS G P TV+ ELSKE L+TML GLGRIRDQLS++G
Sbjct: 80 EEILPLFPENFHQNLKNLLTKIILEKIPTWRNEALADQISLPQLVEMDWRVDVKTSSDTISRMAIPTCLLQMKIKDNASLCGSGPIVSTVTVELSKEKLDTMLDGLGRIRDQLSSVG 196
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A337SQQ2_FELCA (COMM domain containing 9 n=5 Tax=Feliformia TaxID=379583 RepID=A0A337SQQ2_FELCA) HSP 1 Score: 119 bits (299), Expect = 5.240e-32 Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 1
Query: 1 LYVSSEAMTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
L V + + E++ AL P + LKN ++K+ + + W++ + A ++S+PR VDLDWRVD+K +S+ +SRM++PT L+ +K R+ S G P+ V+ ELSKE L+TML GLGRIRDQLS +
Sbjct: 28 LAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHISTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIREDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAV 153
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A5F5Q4T5_HORSE (COMM domain containing 9 n=1 Tax=Equus caballus TaxID=9796 RepID=A0A5F5Q4T5_HORSE) HSP 1 Score: 119 bits (297), Expect = 1.050e-31 Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
E++ AL P + LKN ++K+ + + W+S + A ++S+PR VDLDWRVD+K AS+ +SRM++PT L+ +K ++ S G P+ V+ ELSKE L+TML GLGRIRDQLS +
Sbjct: 38 EAILALFPENFHQNLKNLLTKIILEHVSTWRSETQANQISLPRLVDLDWRVDIKTASDSISRMAVPTCLLQMKIQEDPSVCGDGPSVSAVTMELSKETLDTMLDGLGRIRDQLSAV 153
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A7N5KP81_AILME (COMM domain containing 9 n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5KP81_AILME) HSP 1 Score: 119 bits (297), Expect = 1.050e-31 Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 1
Query: 1 LYVSSEAMTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
L V + + E++ AL P LKN ++K+ + + W++ + A ++S+PR VDLDWRVD+K +S+ +SRM++PT L+ +K ++ S G P+ V+ ELSKE L+TML GLGRIRDQLST+
Sbjct: 28 LVVFRDLSSAEAILALFPETFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDTMLDGLGRIRDQLSTV 153
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A5F9DQD9_RABIT (COMM domain containing 9 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5F9DQD9_RABIT) HSP 1 Score: 119 bits (297), Expect = 1.050e-31 Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
ES+ AL P + LKN ++K+ + + W++ + A ++S+PR +DLDWRVD+K AS+ +SRM++PT L+ +K ++ S G P+ V+ ELSKE L+TML GLGRIRDQLS +
Sbjct: 38 ESILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLIDLDWRVDIKTASDSISRMAVPTCLLQMKIQEDPSLCGDKPSVSAVTMELSKETLDTMLDGLGRIRDQLSAV 153
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A6P6E2Q9_OCTDE (COMM domain-containing protein 9 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6E2Q9_OCTDE) HSP 1 Score: 120 bits (300), Expect = 1.180e-31 Identity = 55/116 (47.41%), Postives = 82/116 (70.69%), Query Frame = 1
Query: 31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
+S+ AL P + LKN ++K+ + + W++ + A ++S+PR VDLDWRVD+KAAS+ +SRM++PT L+ +K ++ S G P+ V+ ELSKE L+TML GLGRIRDQLS +
Sbjct: 80 QSILALFPENFHQNLKNLLTKIILEHVSAWRTEAQASQISLPRLVDLDWRVDIKAASDSISRMAIPTCLLQMKIQEDPSLCGDKPSTSAVTVELSKETLDTMLDGLGRIRDQLSAV 195
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A850ZRF9_SULDA (COMD9 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A850ZRF9_SULDA) HSP 1 Score: 118 bits (295), Expect = 1.940e-31 Identity = 52/116 (44.83%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 31 ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
E + +L P D LKN ++K+ + +P W++ + A ++S+PR VD+DWRVD+K +S+ +SRM++PT L+ +K ++ + G P ++ ELSKE L+TML GLGRIRDQLS I
Sbjct: 35 EDILSLFPEDFHQNLKNLLTKIILENIPAWRNEAQANQISLPRLVDMDWRVDIKTSSDSISRMAVPTCLLQLKIQEDVALCGNSPVVSALTVELSKETLDTMLEGLGRIRDQLSAI 150
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: A0A8C9K667_PANTA (COMM domain containing 9 n=3 Tax=Eutheria TaxID=9347 RepID=A0A8C9K667_PANTA) HSP 1 Score: 118 bits (295), Expect = 2.110e-31 Identity = 55/126 (43.65%), Postives = 85/126 (67.46%), Query Frame = 1
Query: 1 LYVSSEAMTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
L V + + E++ AL P + LKN ++K+ + + W++ + A ++S+PR VDLDWRVD+K +S+ +SRM++PT L+ +K ++ S G P+ V+ ELSKE L+TML GLGRIRDQLS +
Sbjct: 28 LAVFRDLSSAEAILALFPENFHQNLKNLLTKIILEHISTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAV 153
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Match: UPI001CF9FF23 (COMM domain-containing protein 9 isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF9FF23) HSP 1 Score: 119 bits (298), Expect = 2.310e-31 Identity = 55/126 (43.65%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 4 YVSSEAMTK-ESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLDWRVDVKAASEELSRMSLPTVLVDIKYRDQASTAGVMPAEETVSFELSKEALNTMLSGLGRIRDQLSTI 378
Y+ + +T + + L P + LKN ++K+F+ +P W++ + A +VS+P+ +D DWRVDVK AS+ ++RM++P+ L+ +K ++ AS G P TV+ ELSKE L+TML GLGRIRDQLS +
Sbjct: 70 YIVFKGLTSADEILPLFPKEFHQSLKNLLTKMFLENIPTWRTEAQANQVSLPQMIDFDWRVDVKTASDNINRMAVPSCLLQMKIQEDASLCGNKPVISTVTVELSKETLDTMLDGLGRIRDQLSAV 195 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10381.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10381.546.1 >prot_S-firma_F_contig10381.546.1 ID=prot_S-firma_F_contig10381.546.1|Name=mRNA_S-firma_F_contig10381.546.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=121bp MTKESVAALLPADLAAPLKNFVSKLFVSRLPLWKSASTAQRVSMPRFVDLback to top mRNA from alignment at S-firma_F_contig10381:936..1439- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10381.546.1 ID=mRNA_S-firma_F_contig10381.546.1|Name=mRNA_S-firma_F_contig10381.546.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=504bp|location=Sequence derived from alignment at S-firma_F_contig10381:936..1439- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10381:936..1439- >mRNA_S-firma_F_contig10381.546.1 ID=mRNA_S-firma_F_contig10381.546.1|Name=mRNA_S-firma_F_contig10381.546.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=726bp|location=Sequence derived from alignment at S-firma_F_contig10381:936..1439- (Sphaerotrichia firma ET2_F female)back to top |