mRNA_S-firma_F_contig1038.543.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1038.543.1
Unique NamemRNA_S-firma_F_contig1038.543.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: A0A6H5JY61_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY61_9PHAE)

HSP 1 Score: 488 bits (1257), Expect = 1.660e-165
Identity = 259/404 (64.11%), Postives = 292/404 (72.28%), Query Frame = 2 
Query:    2 RRSFLTLPSTLNDDHDRSPGLKTHRSLASVRAAIFDTGNGSSSSSSHATPAPEQQP-------------------QARGFAARRMLGTAALVLISFAAGSWRSSWSASGQRCRGNISAGLA------------PRDARNRPFYDLVVAVLAVGGDSEEAQEEMARVRRVYARYGSEIVPGGSAPASKTPPLTFRVVFVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLAEHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKCGTVFPKGHKLHDPEFLAATGDTIDCHPMYHQGAFYVLGEAIVEHLNRSRDMLAVMSVEDAMMGLWLLGVDKVILDIGGSFYCKCFTHPIPQRKQPFYHFCKTDEKMDACIRDFGAC 1120
            RRSF+TLP  L +    +  L THRS A+      D G               QQP                   Q R   AR +L  AAL ++ F AGS RS   +S   C G    GL             P D R+RP+YDLVVAVLA+GG+S+EAQEE+ARVR+VYARYGSE+VP GS    + PPLTFRVVFVVGRAGL +D ELP AGLL GD YHVDVREGY HLSDKT+AMAGLAEHLRFRFLAKTDGDTFPCL+R T+QL++LP EQQP+VYAGMLNKCGTVFPKGHKL+DPEFLAATG TIDCHPMYHQGAFY+LG  IV  LN+SRDML+VMSVEDAMMGLWLLGVDKV+LDIGGSFYCKCFTHP+P+ K  FYHFCKTDEKMD C+R+FGAC
Sbjct:    8 RRSFITLPPALEEG---TRALSTHRSFAAPTRNSQDVGT------------QPQQPLQXXXXXXXXXXXXXXXXEQPRLLTARHVLVAAALFVLVFIAGS-RSCVGSSCAPCSGRDGVGLTVHATTNGNAAGLPPDPRHRPYYDLVVAVLALGGESKEAQEEIARVRKVYARYGSEVVPDGS----EGPPLTFRVVFVVGRAGLLDDNELPKAGLLRGDFYHVDVREGYAHLSDKTKAMAGLAEHLRFRFLAKTDGDTFPCLARVTKQLVDLPGEQQPKVYAGMLNKCGTVFPKGHKLYDPEFLAATGGTIDCHPMYHQGAFYILGVDIVNFLNKSRDMLSVMSVEDAMMGLWLLGVDKVMLDIGGSFYCKCFTHPVPRNKLSFYHFCKTDEKMDVCLREFGAC 391
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BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: D7FNA5_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA5_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 9.510e-153
Identity = 210/253 (83.00%), Postives = 231/253 (91.30%), Query Frame = 2 
Query:  362 VGGDSEEAQEEMARVRRVYARYGSEIVPGGSAPASKTPPLTFRVVFVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLAEHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKCGTVFPKGHKLHDPEFLAATGDTIDCHPMYHQGAFYVLGEAIVEHLNRSRDMLAVMSVEDAMMGLWLLGVDKVILDIGGSFYCKCFTHPIPQRKQPFYHFCKTDEKMDACIRDFGAC 1120
            +GG+S+E+QEE+ARVR+VYARYGSE+VP G    S+ PPLTFRVVFVVGRAGLP+D ELP AGLL GD YHVDVREGY HLSDKT+AMAGLAEHLRFRFLAKTDGDTFPCL+R T+QL+ LP EQQPRVYAGMLNKCGTVFPKGHKL+DPEFLAATG TIDCHPMYHQGAFY+LG  IV +LNRSRDML VMSVEDAMMGLWLLGVDKV+LDIGGSFYCKCFTHP+PQ+K  FYHFCKTDEKMD C+R+FGAC
Sbjct:    1 MGGESKESQEEIARVRKVYARYGSEVVPDGG---SEAPPLTFRVVFVVGRAGLPDDHELPEAGLLRGDFYHVDVREGYAHLSDKTKAMAGLAEHLRFRFLAKTDGDTFPCLARVTKQLVNLPGEQQPRVYAGMLNKCGTVFPKGHKLYDPEFLAATGGTIDCHPMYHQGAFYILGVDIVNYLNRSRDMLTVMSVEDAMMGLWLLGVDKVMLDIGGSFYCKCFTHPVPQKKMSFYHFCKTDEKMDVCLREFGAC 250
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BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: A0A835YVE3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE3_9STRA)

HSP 1 Score: 283 bits (724), Expect = 5.410e-87
Identity = 157/322 (48.76%), Postives = 195/322 (60.56%), Query Frame = 2 
Query:  161 QQPQARGFAARRMLGTAALVLISFAAGSWRSSWSASGQRCRGNISAGLAPRDARNRPFYDLVVAVLAVGGDSEEAQEEMARVRRVYARYGSEIVPGGSAPASKTPPLTFRVVFVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLAEHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKCGTVFPKGHKLHDPEFLAATGDTIDCHPMYHQGAFYVLGEAIVEHLNRSRDMLAVMSVEDAMMGLWLLGVDKVILDIGGSFYCKCFTHPI--PQRKQPFYHFCKTDEKMDACIRDFGAC 1120
            ++ Q R FAA R L  A +VL+  AA               G  SA +A       P+ DL +AVL + GD EE   E+ RVRR+Y RY +  V       S      FR  FVV       D   P  G L G+ + V+V  GY  L+DKT A   L  HL FRFL KTD DT+PCL R  + L      ++PR+YAG+LN+CG +FP GHKLHD +F AATG  + CHPMYHQGAFY+LG A+VEHL+RSRD L VMS EDAM+GLWLLG  +V++DIGG F+C CFT P   P    PFYHFCK+++K+ AC+R FGAC
Sbjct:    5 RRSQGRRFAAARWLERAVMVLLGEAA-------------APGGASAVVAKPAL---PYVDLAIAVL-IRGDEEE---ELKRVRRIYWRYPNATVTTSVGSWS------FRKYFVVA------DPNAPPEGTLTGEFFRVNVPNGYDRLADKTLATMALRHHLDFRFLVKTDADTYPCLQRVIETLHARGVAREPRLYAGLLNRCGKLFPAGHKLHDAQFQAATGGVVPCHPMYHQGAFYILGRALVEHLDRSRDDLQVMSNEDAMVGLWLLGARRVLVDIGGDFHCACFTKPRGEPGNDLPFYHFCKSEDKVAACLRKFGAC 294
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BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.350e-41
Identity = 98/286 (34.27%), Postives = 150/286 (52.45%), Query Frame = 2 
Query:  329 PFYDLVVAVLAVGGDSEEAQEEMARVRRVYARYGSEIVPGGSAPASKTPPLTFRVVFVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLAEHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKC--------GTVFPKG-HKLHDPEFLAATGDTIDCHPMYHQGAFYVLGEAIVEHLNRSRDMLAVMSVEDAMMGLWLLGVDKVIL---DIGGS--FYCKC----FTHPIPQRKQ----PFYHFCKTDEKMDACIRDFGAC 1120
            P YD+++ V +  GDSE+  +    +RR+Y RY   +V      + K     F++VFV GR+  PED      G+L GD   ++  +GY ++  KT+ M  L +H+ F++L K+D DTF C+ +   +L  LP+E + +VYAG+   C        G VF    HK +D  ++  T  +++C+P YHQGA Y+L  ++VE L + RD L     ED  MG WL+GVD+ ++   D+ G+  + C C    F H     K      F+H CK   +M  C    G C
Sbjct:  111 PTYDMLLVVFS--GDSEDDAKRRDLMRRIYGRYRGRVVLNRGKKSRKK--YKFKLVFVRGRSDAPED------GVLNGDTLLINAPDGYRNIVHKTKGMVSLLKHVNFKYLMKSDDDTFVCVQQVFHRLHNLPEETKKKVYAGVPTHCNMPGHQMVGRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKCAIAMGTC 386
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BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 6.010e-35
Identity = 74/228 (32.46%), Postives = 119/228 (52.19%), Query Frame = 2 
Query:  485 FRVVFVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLAEHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKCG---------TVFPKGHKLHDPEFLAATGDTIDCHPMYHQGAFYVLGEAIVEHLNRSRDMLAVMSVEDAMMGLWLLGVDKVILDIGGS-----FYCKC--FTHPIPQRKQPFYHFCKTDEKMDACIRDFGAC 1120
             +V+F+V      E+      G LVGD+ +V    GY ++  KT+AM  +  H   ++L K+D DTF CL+R  +++  LP   + +VYAG+   CG          +    HK HD +F++ T   +DC+P YHQGAFY+L E +V++L++ R  L   + ED  MG WL+GVD+ ++          + C C  +T  +      F+H CK+ +++  C      C
Sbjct:    1 MQVLFLVSHIDASEE------GDLVGDILYVQCPAGYRNIVQKTKAMLSIVTHFNHKYLMKSDDDTFVCLNRVAKRMFTLPPAVKEKVYAGIPTACGLESNPHIGRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKYDTNAFFHNCKSLDQLQKCAEFLPFC 222
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BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.070e-33
Identity = 88/291 (30.24%), Postives = 140/291 (48.11%), Query Frame = 2 
Query:  326 RPFYDLVVAVLAVGGDSEEAQEEMARVRRVYARYGSEIVPGGSAPASKTPPLTFRVVFVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLAEHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKCG-----------TVFPKGHKLHDPEFLAATGDTIDCHPMYHQGAFYVLGEAIVEHLNRSRDMLAVMSVEDAMMGLWLLGVDKVILDIGGS-----FYCKCFTHPIPQRKQP----------FYHFCKTDEKMDACIRDFGAC 1120
            RP++D ++ V +  GD  +A  +   +R +Y  YG +I+       +     TF+V++VVG  G  +       G L+ D+  V V +GY +++ KT+ M    +H+RF++L KTD DTF CL R   Q+  +P   +P+VY G+   C             +     K +D ++L  T + +DC+P+Y QGAFY+L   +VE LN+    L     ED  +GLWL GVD+ I  +        + C C        K+P          F+H CK+ + +  C      C
Sbjct:  142 RPYFDYLLVVFS--GDDTDALAKRDYMREMYGTYGGQILITDERGQAFI--YTFKVLYVVGHPGAVD------MGDLMDDVLFVKVEKGYRNIAAKTKKMLEAVKHVRFKYLLKTDDDTFVCLRRTASQMHLVPAHIKPKVYGGIPTACHLPNNPNDAVGKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSC--------KRPNFNPGGDANVFFHNCKSMDDLRGCKASMPMC 414
[Close]
BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: A0A7S4B0K0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B0K0_CHRCT)

HSP 1 Score: 82.4 bits (202), Expect = 9.460e-13
Identity = 70/228 (30.70%), Postives = 111/228 (48.68%), Query Frame = 2 
Query:  314 DARNRPF-YDLVVAVLAVGGDSEEAQEEMARVRRVYARYGSEI-VPGGSAPASKTPPLTFRVVFVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLA-EHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPR--VYAGMLNKCGTVFPKGHKLHDPEFLAATGDTI---DCHPMYHQGAFYVLGEAIVEHL-NRSRDMLAVMSVEDAMMGLWL 970
            DA +RP  YDL+V +L+      + +     VRR +ARY   I    G + +++    + R +FV+G A          A L   DL  + V +GY  +S K  A    A E+  F++L KTD D+F CLSR  + L       QPR  +Y G+LNK  ++     + H P +  A    I     +  Y QGA Y+L   + E + +++ ++  +  +EDA++G  L
Sbjct:  221 DAPSRPLSYDLLVLILSSRQSELQPERRRVAVRRSWARYSPHIGAEEGPSLSNREAQCSIRFLFVMGGA--------KAARLGGDDLLLLPVEDGYREISQKVIAAIRFANENFDFKYLLKTDDDSFVCLSRLMESL-----RLQPRSGLYMGVLNKNHSIVLDPWQAHYPRWRDAEYAEIFKRRVYLPYMQGAGYILSRDMAERVVSKAAELPKIPPIEDALVGALL 435
[Close]
BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Match: A0A7S0PTU1_9EUKA (Hexosyltransferase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PTU1_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 7.640e-6
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 2 
Query:  323 NRPFYDLVVAVLAVGGDSEEAQEEMARVRRVYARYGSEIVPGGSAPASKTPPLTFRVVFVVGRAGLPEDVELPGAGLLVG--DLYHVDVREGYTHLSDKT-RAMAGLAEHLRFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKCGTV 781
            +R  YDLV+ +L+        +   A VR+ +A+   E+              + R +FV+G A +            VG  DL  + V +GY  +S K   AM  ++E + F++L KTD D+F CL+R  + L   P+     +Y G+LNK  +V
Sbjct:  134 SRISYDLVIMILSSRRSELSPERRRAAVRQSWAKASGELGEEVRESKGGGKRCSVRYLFVLGGARMQR----------VGGDDLLLLPVEDGYRQISHKVIGAMRYISETIEFKYLLKTDDDSFVCLARLLEMLRLQPRTD---LYLGVLNKNHSV 276
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1038.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JY61_9PHAE1.660e-16564.11Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7FNA5_ECTSI9.510e-15383.00Hexosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YVE3_9STRA5.410e-8748.76Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835YWI3_9STRA1.350e-4134.27Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835YNB7_9STRA6.010e-3532.46Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6H5JHW0_9PHAE1.070e-3330.24Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A7S4B0K0_CHRCT9.460e-1330.70Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0PTU1_9EUKA7.640e-629.49Hexosyltransferase n=1 Tax=Coccolithus braarudii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1038contigS-firma_F_contig1038:17110..24741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FNA5
PFAMsEOS1,Galactosyl_T
Max annot lvl2759|Eukaryota
KEGG koko:K00734
KEGG ReactionR05927
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Evalue7.2e-159
EggNOG OGsKOG2288@1|root,KOG2288@2759|Eukaryota
EC2.4.1.134
Descriptiongalactosyltransferase activity
COG categoryM
CAZyGT31
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionGlycosyl transferase, family 31
Ec32 orthologEc-24_000030.1
Exons5
Model size1999
Cds size927
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.1117175-UTR-S-firma_F_contig1038:17109..173051622815570.1117175-UTR-S-firma_F_contig1038:17109..17305Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1038 17110..17305 +
1696949423.3888774-UTR-S-firma_F_contig1038:17109..173051696949423.3888774-UTR-S-firma_F_contig1038:17109..17305Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1038 17110..17305 +
1622815570.189102-UTR-S-firma_F_contig1038:23865..247411622815570.189102-UTR-S-firma_F_contig1038:23865..24741Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1038 23866..24741 +
1696949423.4772437-UTR-S-firma_F_contig1038:23865..247411696949423.4772437-UTR-S-firma_F_contig1038:23865..24741Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1038 23866..24741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.1228805-CDS-S-firma_F_contig1038:17305..177571622815570.1228805-CDS-S-firma_F_contig1038:17305..17757Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 17306..17757 +
1696949423.4011154-CDS-S-firma_F_contig1038:17305..177571696949423.4011154-CDS-S-firma_F_contig1038:17305..17757Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 17306..17757 +
1622815570.1347737-CDS-S-firma_F_contig1038:19640..197601622815570.1347737-CDS-S-firma_F_contig1038:19640..19760Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 19641..19760 +
1696949423.4095526-CDS-S-firma_F_contig1038:19640..197601696949423.4095526-CDS-S-firma_F_contig1038:19640..19760Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 19641..19760 +
1622815570.1472647-CDS-S-firma_F_contig1038:20625..207221622815570.1472647-CDS-S-firma_F_contig1038:20625..20722Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 20626..20722 +
1696949423.4184837-CDS-S-firma_F_contig1038:20625..207221696949423.4184837-CDS-S-firma_F_contig1038:20625..20722Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 20626..20722 +
1622815570.159081-CDS-S-firma_F_contig1038:21474..215941622815570.159081-CDS-S-firma_F_contig1038:21474..21594Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 21475..21594 +
1696949423.4268205-CDS-S-firma_F_contig1038:21474..215941696949423.4268205-CDS-S-firma_F_contig1038:21474..21594Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 21475..21594 +
1622815570.1757958-CDS-S-firma_F_contig1038:23727..238651622815570.1757958-CDS-S-firma_F_contig1038:23727..23865Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 23728..23865 +
1696949423.437532-CDS-S-firma_F_contig1038:23727..238651696949423.437532-CDS-S-firma_F_contig1038:23727..23865Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1038 23728..23865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1038.543.1prot_S-firma_F_contig1038.543.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1038 17306..23865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1038.543.1

>prot_S-firma_F_contig1038.543.1 ID=prot_S-firma_F_contig1038.543.1|Name=mRNA_S-firma_F_contig1038.543.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=309bp
MLGTAALVLISFAAGSWRSSWSASGQRCRGNISAGLAPRDARNRPFYDLV
VAVLAVGGDSEEAQEEMARVRRVYARYGSEIVPGGSAPASKTPPLTFRVV
FVVGRAGLPEDVELPGAGLLVGDLYHVDVREGYTHLSDKTRAMAGLAEHL
RFRFLAKTDGDTFPCLSRATQQLLELPQEQQPRVYAGMLNKCGTVFPKGH
KLHDPEFLAATGDTIDCHPMYHQGAFYVLGEAIVEHLNRSRDMLAVMSVE
DAMMGLWLLGVDKVILDIGGSFYCKCFTHPIPQRKQPFYHFCKTDEKMDA
CIRDFGAC*
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mRNA from alignment at S-firma_F_contig1038:17110..24741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1038.543.1 ID=mRNA_S-firma_F_contig1038.543.1|Name=mRNA_S-firma_F_contig1038.543.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=7632bp|location=Sequence derived from alignment at S-firma_F_contig1038:17110..24741+ (Sphaerotrichia firma ET2_F female)
AAGGAGGAGCTTCTTGACACTCCCGAGCACCCTCAATGATGACCATGACC
GGTCACCGGGCTTGAAAACACACCGGAGCCTCGCCAGCGTTCGAGCAGCG
ATATTCGACACCGGCAACGGCAGCAGCAGCAGCAGCTCGCACGCTACACC
CGCGCCAGAGCAGCAGCCACAGGCAAGAGGGTTCGCCGCGAGACGCATGC
TTGGGACGGCGGCCTTAGTGCTGATCTCCTTTGCTGCCGGGTCGTGGCGA
TCGAGTTGGAGTGCGTCAGGACAGCGATGCCGTGGAAACATCTCGGCAGG
ACTGGCTCCGCGGGATGCCCGAAATAGACCTTTCTATGACTTGGTGGTGG
CTGTCCTGGCCGTCGGCGGGGACTCCGAGGAAGCTCAGGAAGAGATGGCG
AGGGTGCGGAGGGTGTACGCTAGATACGGGAGCGAGATTGTCCCCGGTGG
TTCGGCGCCGGCGTCGAAAACCCCGCCGTTGACTTTCCGAGTCGTGTTTG
TCGTTGGGAGGGCCGGGTTGCCGGAGGATGTGGAGCTGCCGGGCGCGGGG
CTGCTGGTGGGGGACTTGTACCATGTGGATGTTCGGGAGGGATACACGCA
CCTGAGCGACAAGACCAGGGCGATGGCGGGGCTGGCGGAGCATCTACGGT
GAGTCACCGAAGGTATCCAAGAGCACTTCGCGTCTTCGCGTACGTTGGAC
AGCAGCGGTCGTCGAGACTACGTAGATACGATACACGTCGTGTACCACTG
CTGTGTCGATCCTGGGCATAGGTTCAATGATAATTCCCCCGCTAATTTAG
CGTCTTGGCGGACTCAACCATACAGACTACCACTGTTGTCTTGTAGTATC
CGACTGCAGCTGCGGCTATCACAATACAATGTGTAGACTAGGCAACTGAT
CAATCTGCTGTAGGCTACAAGTTGCACCTGCTGCCCTGCTGTAGTCTACA
CAAGCTGCACCTTCAGACCGCCGGCAAGAACACCATCAATGCCCAACCGA
CTGCTGACCGCAGTACATACTGTGCTGTAGCCCGAACTGCTGCTTTGTGT
ATCCTCGTGCTGCGCGATCTACCTACGAGACCAACATGCAAGAGGGCCAG
AAATATGTCTTAGGCTGTCTGTCAAGTTGGTGTAGTCTAATGGCAGGTAC
AGTAGCAGTGGTGTAGCTCGAGCGTGCTCTGTTGTGCACACACATGCTAC
AGTACTGCCGTGGTTGTATGTAGTCCCACCAGGAGCTACTGCTGTAGCCA
GTGGAATACGTAAGTATGACAGGCAACTGCGGAGACACACCACACCACCC
CTAACCTCCAGAGGCACTACTGCTGTAGCCAGCAAACAGGCAATTATCGT
GTCGCCTTTTTCTCGTCGTCGAGGGTGCTTGTGTGTGTGTGTGTTCTTCC
CATCTATTTTGGTAACAGTCCCTCTGGTCAAGGCGAGACGTGTACTTCAC
TTTGCCGTGATACAGAGGACTACACGTTGCAGCGTATTTTTCTGTCCATC
TGAACCAACCGGAGTCACACTGGAGGGGCGAACACTGGGGCTTTTTTTCT
TCTTTGGGGGTGCGTGTTTCTAGTATTTGTGTGTTGCTTGTTCTCTAAAG
GCGGGCCAGTATAGGTTGGCGAATGGAGTAGCATGTACTCCGTTCGATGC
AAAAAAGTTAGTGTGTACTCCTATACAACAGTTAGTCCCCCTGGAACGAC
TTTTTCACAGGACGGACGTATACGGCTGACGAATGTAGAAACTTTATTAA
AACAATACCGATGGAGTGGTTGGCGGGCCAATATGTACTGTACCAGGTGC
ATCGCAGAGCTGCCGGTCAGTACAACTAGGGCGTGCCCGGGAAAAAGCGG
TAGAGAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACACT
AAAAACCATCCCGGTCTCTCTATTTATCCAGTACCTCCCTCTGTCTCAAC
CTCTCCGTACTAATCCAGCGCTTGACGCGGCCAATTTCCATGGTCACAGG
CCAACATACCTAAAAAAGGCAGACAAAAATACAAAATACAATGGATGTAC
GATAGGTGATGACTATGTTGACAGCTACCCGGCAAGTGCACAAGGGGAAC
GACCATCGCAAGAAAGCATGACTGGTACAGCAGTATAAGGTACAGAAATA
TGAGCACAGCGGATGAGAAAGTGGATCACAGCATTGCACAAGGGGAACGA
CCATCGCAAGAAAGCATGACTGCTACAGCAGTATAAGGTACAGACGTATG
AGCACAGCGGATGAGAAAGTGGATCGACCATCGTGAAGAAAGCATGACTG
GTACAGCTGTACCGTATAAGGTACAGAAGTATGAGCACAGCAGATGAGAA
AGTGGATATTTTTCAGTATAAGACAGAAGTCTGAGCACAGCGGATGAGAA
AGTGGCAGCGGCGACGGCCTTCTCTTTATCTTTATCTTATCTTGTTTGTG
CTCTTGCGCTTGTGTTGTCCTCTCTTACCGCCGAAACCGACGGCAACTTA
CATGCATCGCACGCGCACATGCTTGTCTTAGGTTCCGTTTTCTGGCCAAG
ACGGACGGAGACACTTTCCCGTGCCTGTCACGCGCGACGCAGCAGCTCTT
AGAACTGCCGCAGGAGCAGCAGCCGAGGGTCTACGCGGGGATGCTAAACA
AGTGAGGCCAAAGGCTACGATATTAGAGTAGATCGCGATCACGATAGTGA
GGCCAAAAGCTACGATATTAGAGTAGATCGCGATCACGATAGCTCAGAAA
ACGCGTCAAGTTCTTGAGTCTCCCGTAGTTTGCAGCATGGATGTTTTGCT
CTTTTTGTTTTGTTTGTTTCTCACGTTAGCTCTATACTATATTCCAAAAA
AACGTCCACGGGAGCCCGTGGTCACAATAGCTGGGCACAATCGTCGCCGC
AAAGAAACTCAGAAAAAACATTGTACGTGCACACCCTGCGATACTAAATT
ATCCCTCGGAAAGGTCTTGCGTTTAACTGGCGCTAAATCAAAACGTAGGA
TACGTACCACTCGGGAAGATCAAATACAACAAGTAGAAAAACCAAACCAA
CCGAGGCAAAAGAGGGTCAGGCACTGCGCCAGCGAAACGGAGACAACTAC
GACAAGCCGGAGGCTTTCCACACCCGCCTACAATGCCGGAGGGTTCCGTG
TCGGATTCACGCCGACCAGGCACCCCTCACTCCAAACTACAATCCTGTGT
ATGGTTCCAAGGTTGCAATGCGGAGAGGGGGGCGGAAAAAAACCCCGTAG
AGGCCAAAGAACAGCTACAAGTACACGACAGGCCGGAGGCTTCCCGCACC
CTCCTACAACGCGTCGCTGTACGACACTAGTAGTGCTGAAGTGTGTACGA
TGGAGCTCGCTGCAGGACGTTTGTAGTTTATTCAGCGAATGCGTGTGTAC
ATCCGCACCGGTTGAACCTTGTCAGGGCACGGCAAGTACCCGACGACAGC
TTGTAGGCGAACCAAGATGCAAGATGCGATGCTGTGTTTCTGCTTTCGAA
TCCGTTCCCATGGCAGGTGCGGCACGGTGTTTCCGAAGGGGCACAAGCTG
CACGACCCAGAGTTCTTGGCGGCGACTGGAGACACCATCGACTGCCACCC
CATGTACCACCAGGTCAGCGTCAGCGTCAATTAGTGCTTTGATGCCACTG
CCACCCCATGTACCACCAGGTCAATGTCAGTGTCGGCCAGTGCTATGATG
CGACTGCCATACCACCAGGTCAGCGTCAGTGTCAGTCAGTGCTATGATGC
TTCGTCGACAGCACCTGCCTGCAACATCCTGTGGTATTCCACGTTTCCAC
CATAGCCTGTGGTATTCCACATTTCCACCGTTGGCCTCTCGCGAGAGGGG
AACGTCTTTTCCACGGAGAAAGTGGCCTTCAATTAAACTATGCATACCAG
TAGGAATGGCAGTCTCATTTTTTCAACGCTCGTGATACATGTGTATGATG
CACACAACCTCCGTACGTTCTTGTATTCTCTGGCGGCGAGATGTGCTATC
CCCAGCCAGCGGTGTTTGTCCGCGATCTGTGTGTGTGTGTGTGAAGGGGC
AAAATCCGTAAAATATCAAACACGAACACGTGTGTGTGTGTGTGTGTGCG
CGTGCGTGTGTGCGTGTGTGCGTGTTTTTATTCTCGTCGCACCTCCTGGC
CTGCCTCGCGTGTTGCATTTTGCCGTGCTGCTATTGTTTGTGCGCTCTTT
TTATTCCTCTGGCTCCTGCTGTTTCTTCGCTTTCTTCTCTCCAGGGAGCC
TTTTATGTTCTTAGCGAGGCCATTGTGGAGCACTTGTATTTTGCTGTTCT
GCCATTATTCATGCGCTCTTTTTCCTCCTCTGGCTCCTGCTGTTTCTTTG
CTTTCTTCCTTCCAGGGAGCCTTTTATGTTCTTGGCGAGGCCATCGTCGA
GCACCTGAACAGAAGCCGTGACATGCTGGCGGTCATGTCCGTGGAGGATG
CCATGATGGGGCTGTGGCTGCTGGGCGTCGACAAGGTGATTGCAGCACAG
CAGCGTTGGTGTGTTCTTCCAATTCGTCTCCATACGTTCTGTTTTAAGGC
TCAGCTTTAGCAGTGTTTGTGTGTTCTTCCAAACCGTCTCCATACGTTCT
GTTTTAAGGCTCAGCTTTAGCAGTGTTGGTGTGTTCTTCCAATTCGTCTC
CATACGTTCTGTTTTAAGGCTCAGCTTTAGCAGTGTTTGTGTGTTCTTCC
AAACCGTCTCCATACGTTCTGTTTTAAGGCTCAGCTTTGCTCTGAAGGTG
CCGCTCCCACGCTGTCCTTCCCGATCAACTGTAGGAGTAAATTTCACGTG
GAAACAGATGGAGACAAGAGTACTTTTTTTGTTGAGAGTATTTGATGGCC
GTAACACAACACTGCTGTGGTCAACATCTTTAGTGTTTTGAATTGGAATT
CCGGGAAAAGCCAGTATTTTAACCCTCATCGTGTCCATTTTGCCCTCCTC
CCCGGCACCCTCAGGCCCATTGTTCACCTCTCCCCGATTTGTGTGTGTGT
GTGTGTGTGTGTGTGTTTTTTTTTCGCCAAATAGTCTGTCACAACTGCTT
GACCCACGCTGCCAGCCTTGCCTTGCCGTTGCCTTTTCCCATGCTGCATC
CTACCTTATAGATCTACGTCACAGCCCGGGCTAGTTTGGTTTGGTTCGGT
TTAGTTTGGTTTAGTTTGCTCGGGCGGTTTGCCGGTTTCCGGCTGGGTGG
CGGGTGCGATTGCCAAAACCGCTCCTCTTGCCCTATTAATTAAGGGAGGC
CTGACAAGGGTTTTTGGAGTCGGGGCAATGTTGGAAAATGCCCGAGAATG
TACACATCAACCATACAGCAGATCCACCAGACCGTTAGGGAAGGGTTGCG
CAGGAAGAGACGTCTTGGTTTCACACAGCGGCGGACGGGGCTGCTCTTTA
CATGCGTATCACGTCGTCTACCTCCAACAGTCTCTTCTGCTTTTCTGATA
TATTTTTGGTATTTTTGGCGCCTTTTCAGAAATCAAGGCAAACAGGCCAT
TTGCGGGCGTATATATCAACGCGAGGGTTTGCTTTCCTGATTTTGCTTTC
GTATTTTTGGCGCCTATTCAGAAATCAAGGCAAACAGGCCTTTAGCGGGC
GTACATATCAACGCGAGAGTTGGGACTCTCTCCCCCGTCCCCTGCGATAT
CAGTAGAGGACATCATGGAGAAGGATGTGGTGCATGCCGGCATGCTTATG
TCTGCTGCTGGGGCAGATTTCTCGAGCACCGCAGCAGTAGATCAAATTTT
CGCAAATCAGGGCAAAACCCTTTTTTTTACACTTCCGGTGATCATACGGA
AGATAACACACATACGCTGAATAACATACCCCCTTACAAACGACGAAGAA
AATAAACAACCAGCAAACCTAACGGATTGCGGATTTTGGCTGTTGGCTAG
GACGGGGAGTGTGTACAACAGTCCCCCATGGAACAACTTTCTCACAGGAC
GGACGTATACGGCTGACGTATTTAGAAAATTCAGTAAAACACGGCAAACA
TCCACTGCTGTTCTCGCCGCCACAGATTCCGACCTCCTGACTTTCGGGTC
CACAGCAGTAGCGCCTAGCACACTAGGTAGCTGAATAGCTACTGCTGAGG
CCCGTGGTTGGGGAGGATAGGGTCTGTGGCGGCGAGGACAGCAGCGGATG
TTTGCGGCCGTTGGGCCAGATCGCGGAGTTGGGGATCTACTGCTGCGGTG
CTTGATAACTCCGCCCCAGCAGCAGATACGAGCATGCCAACACGCATCGC
ACCCTTCTCCATGGTGTCCTCTACTGATACAGCTGCAGCTGCTCATTGTA
CAGAGTACGGCTTTCCTCAACCCTGACCTTATTCGGAGTTAAGCCGTTTG
GCCTGTTTTTGACTTGGTTTTTGAATGGGGGCAGGGGGCCCGAATTTTTT
TTTTCTAGGATTTTGTGTGGGCGTGTTTCGCCGACTCGTCAGGCCCCCCT
GAGTTGCCGCAGATATATTTAGTGTTGAGTGAAGACGCGTCTTCTTCCCT
AGATTGTCGTTTTCCAAGCTCGAAGAAAGAAACCGCAGTGTGATGAGCGA
TGCTCGATCTTGATACGTATTTTCTTGATACGGCGTCCTTTCCGTTTCCT
CCGCTCACTCCAATTCAGGTGATACTGGATATTGGCGGCAGCTTCTACTG
CAAGTGCTTCACGCACCCGATACCGCAGAGGAAGCAGCCGTTTTATCACT
TCTGCAAGACCGATGAGAAGATGGACGCCTGCATTCGCGACTTTGGCGCA
TGCTAGCCAAGATGGTGATGACGAGGAGGAGGAGGATCTAAAGCATTATT
TCGTTTTTTCAAGTTTATTTTTTTTCTGTCTCACTGAGGTGTTTGCGGGA
CGATAGTGAGGATTTGCGCCGGGTATGATTTGAGATCCCGGAATGTCTAC
CACAGCTTTGTGTATGCGAAAGAAATCTAGTCGAATTAACGAATTATCCT
TCCTATATGGGGCCCTCTCTCTCGTAGGGCTGAATGTCGAAACGCTCTCT
GTTTGTGTATCTGAGGCATCGGTGCACGCGCTGCCTGTGTTCCTGTATAA
TCTAGATACGGTACCTCGTTGTTTTTGGCAACAGCTATGATGCGTCGATT
TCAGAGACCTTGTACTGGTACAGTGCAAGGATATGCATCAGAATATGGCT
GGCAATGTGAGCGGTGGTGCTGGCTTCAAGAAGCGCAGCTTTAATTGTTA
GCTCCTCGCCATGTCCATGGGGTCTATGTACGTTATATTGTCGCTGCAGT
GTGGTGTCATGCTATCATTTTTGTGTTTTTAAACGATCCTTATCTAGTGT
CTAGTGTCTACCAGTGTTTGGTGAGGTCAGTGCTCGGTGACTGTGGCTGT
GGCTGTGGCTGCTGATGTTGACATGGTGCTGTTGGTGTGGATATGGTGTT
GCTGTTGGCAGGACAGGTTAACGGGCATCGGTGTTTGTTGCTCCGCAGAT
CATGCGATATTGTGTGTAGATTGCCACTTGACACTCCATGTTGTGTTGAG
GTATCGGCTAGGCTTAGTCTAGGGAGAGATCTGCATTGTAAGTATTGCTT
TTCATAGACTTCAAAAAAGAAATCTACAAACTTCAGCCGTCTACGTCCAG
CCTGTGAATAATCAGTCGTCCCAGAGGGACTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1038:17110..24741+

>mRNA_S-firma_F_contig1038.543.1 ID=mRNA_S-firma_F_contig1038.543.1|Name=mRNA_S-firma_F_contig1038.543.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1854bp|location=Sequence derived from alignment at S-firma_F_contig1038:17110..24741+ (Sphaerotrichia firma ET2_F female)
ATGCTTGGGACGGCGGCCTTAGTGCTGATCTCCTTTGCTGCCGGGTCGTG
GCGATCGAGTTGGAGTGCGTCAGGACAGCGATGCCGTGGAAACATCTCGG
CAGGACTGGCTCCGCGGGATGCCCGAAATAGACCTTTCTATGACTTGGTG
GTGGCTGTCCTGGCCGTCGGCGGGGACTCCGAGGAAGCTCAGGAAGAGAT
GGCGAGGGTGCGGAGGGTGTACGCTAGATACGGGAGCGAGATTGTCCCCG
GTGGTTCGGCGCCGGCGTCGAAAACCCCGCCGTTGACTTTCCGAGTCGTG
TTTGTCGTTGGGAGGGCCGGGTTGCCGGAGGATGTGGAGCTGCCGGGCGC
GGGGCTGCTGGTGGGGGACTTGTACCATGTGGATGTTCGGGAGGGATACA
CGCACCTGAGCGACAAGACCAGGGCGATGGCGGGGCTGGCGGAGCATCTA
CGATGCTTGGGACGGCGGCCTTAGTGCTGATCTCCTTTGCTGCCGGGTCG
TGGCGATCGAGTTGGAGTGCGTCAGGACAGCGATGCCGTGGAAACATCTC
GGCAGGACTGGCTCCGCGGGATGCCCGAAATAGACCTTTCTATGACTTGG
TGGTGGCTGTCCTGGCCGTCGGCGGGGACTCCGAGGAAGCTCAGGAAGAG
ATGGCGAGGGTGCGGAGGGTGTACGCTAGATACGGGAGCGAGATTGTCCC
CGGTGGTTCGGCGCCGGCGTCGAAAACCCCGCCGTTGACTTTCCGAGTCG
TGTTTGTCGTTGGGAGGGCCGGGTTGCCGGAGGATGTGGAGCTGCCGGGC
GCGGGGCTGCTGGTGGGGGACTTGTACCATGTGGATGTTCGGGAGGGATA
CACGCACCTGAGCGACAAGACCAGGGCGATGGCGGGGCTGGCGGAGCATC
TACGGTTCCGTTTTCTGGCCAAGACGGACGGAGACACTTTCCCGTGCCTG
TCACGCGCGACGCAGCAGCTCTTAGAACTGCCGCAGGAGCAGCAGCCGAG
GGTCTACGCGGGGATGCTAAACAAGTTCCGTTTTCTGGCCAAGACGGACG
GAGACACTTTCCCGTGCCTGTCACGCGCGACGCAGCAGCTCTTAGAACTG
CCGCAGGAGCAGCAGCCGAGGGTCTACGCGGGGATGCTAAACAAGTGCGG
CACGGTGTTTCCGAAGGGGCACAAGCTGCACGACCCAGAGTTCTTGGCGG
CGACTGGAGACACCATCGACTGCCACCCCATGTACCACCAGGTGCGGCAC
GGTGTTTCCGAAGGGGCACAAGCTGCACGACCCAGAGTTCTTGGCGGCGA
CTGGAGACACCATCGACTGCCACCCCATGTACCACCAGGGAGCCTTTTAT
GTTCTTGGCGAGGCCATCGTCGAGCACCTGAACAGAAGCCGTGACATGCT
GGCGGTCATGTCCGTGGAGGATGCCATGATGGGGCTGTGGCTGCTGGGCG
TCGACAAGGGAGCCTTTTATGTTCTTGGCGAGGCCATCGTCGAGCACCTG
AACAGAAGCCGTGACATGCTGGCGGTCATGTCCGTGGAGGATGCCATGAT
GGGGCTGTGGCTGCTGGGCGTCGACAAGGTGATACTGGATATTGGCGGCA
GCTTCTACTGCAAGTGCTTCACGCACCCGATACCGCAGAGGAAGCAGCCG
TTTTATCACTTCTGCAAGACCGATGAGAAGATGGACGCCTGCATTCGCGA
CTTTGGCGCATGCTAGGTGATACTGGATATTGGCGGCAGCTTCTACTGCA
AGTGCTTCACGCACCCGATACCGCAGAGGAAGCAGCCGTTTTATCACTTC
TGCAAGACCGATGAGAAGATGGACGCCTGCATTCGCGACTTTGGCGCATG
CTAG
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