mRNA_S-firma_F_contig10379.541.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10379.541.1
Unique NamemRNA_S-firma_F_contig10379.541.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10379.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10379contigS-firma_F_contig10379:1838..2755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size540
Cds size522
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10379.541.1prot_S-firma_F_contig10379.541.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10379 1854..2755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.9929738-UTR-S-firma_F_contig10379:1837..18531622815569.9929738-UTR-S-firma_F_contig10379:1837..1853Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10379 1838..1853 +
1696949423.343286-UTR-S-firma_F_contig10379:1837..18531696949423.343286-UTR-S-firma_F_contig10379:1837..1853Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10379 1838..1853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.00497-CDS-S-firma_F_contig10379:1853..18771622815570.00497-CDS-S-firma_F_contig10379:1853..1877Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10379 1854..1877 +
1696949423.359909-CDS-S-firma_F_contig10379:1853..18771696949423.359909-CDS-S-firma_F_contig10379:1853..1877Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10379 1854..1877 +
1622815570.0165966-CDS-S-firma_F_contig10379:2257..27551622815570.0165966-CDS-S-firma_F_contig10379:2257..2755Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10379 2258..2755 +
1696949423.3703609-CDS-S-firma_F_contig10379:2257..27551696949423.3703609-CDS-S-firma_F_contig10379:2257..2755Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10379 2258..2755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10379.541.1

>prot_S-firma_F_contig10379.541.1 ID=prot_S-firma_F_contig10379.541.1|Name=mRNA_S-firma_F_contig10379.541.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=174bp
MQCHTPKEDTVRSYARETVTKEADDIDNDGGDDMAIASTASGSEDEGVRS
STASDSEDKRLVEYTVNDSEREGLVPYTESDDSEDEPIASSRPASGRGTT
ARKVASAVRRASHPPVASEMAQTKEKDQTVGKQRASKSVPLVSRFALDLY
DVRNMGEPAVSTASPPGSTPCGKG
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mRNA from alignment at S-firma_F_contig10379:1838..2755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10379.541.1 ID=mRNA_S-firma_F_contig10379.541.1|Name=mRNA_S-firma_F_contig10379.541.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=918bp|location=Sequence derived from alignment at S-firma_F_contig10379:1838..2755+ (Sphaerotrichia firma ET2_F female)
GCAGCAGCCGGAGAAAATGCAGTGTCACACACCGAAAGAGGTTCGTTGTA
GCGTTCAACTCAGGCACGTACATACCCCCTTTGTGGCAATACGCGCATCT
ATCCCTGTGTGATATTCTGGTGGCTAACCACCCCTCCCTGCGTTCGTGGA
TGATCTTGTTCCTGGTAATCACGCGGACTTGCGGCATGCTAGCCCTTCCT
TGTTCCTCCGATGCAAGCTTTGCATTGAATCAACCTTCGAGAGCCGGCTG
TGCGATGGACGTCATGGCTAAGAAACCGATGCGAACCACCACCTCCGTGT
CAAACCAGAGAGACCTGGCGCAAAGCCCATGGTGTCGCCCCAATTTCCGC
TGCTTCCGTCGTTGTCTCTCCCCACCGGGACTGCCTCTGGATCACACGAA
CTTGCTAACCTCTGCGACAGGACACAGTGCGGAGTTACGCGCGCGAGACG
GTTACTAAGGAGGCCGATGACATCGACAACGACGGTGGAGACGACATGGC
CATCGCGTCAACGGCGAGCGGCAGCGAAGACGAAGGGGTCAGGTCGTCCA
CGGCAAGCGACAGCGAAGACAAGAGGCTCGTGGAGTACACGGTGAACGAC
AGCGAACGCGAAGGGCTAGTGCCGTACACGGAGAGCGACGACAGCGAAGA
CGAACCAATCGCGTCATCAAGACCGGCGAGTGGACGCGGAACGACAGCCC
GGAAGGTCGCAAGCGCCGTTCGGCGTGCTTCCCACCCTCCGGTCGCGAGC
GAGATGGCCCAGACAAAGGAGAAAGACCAAACGGTCGGAAAACAACGGGC
GTCCAAGTCTGTACCGTTGGTATCCAGGTTTGCCCTCGACCTGTACGACG
TACGGAACATGGGCGAACCCGCAGTGAGCACAGCAAGCCCGCCGGGCTCA
ACACCCTGTGGCAAGGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10379:1838..2755+

>mRNA_S-firma_F_contig10379.541.1 ID=mRNA_S-firma_F_contig10379.541.1|Name=mRNA_S-firma_F_contig10379.541.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1044bp|location=Sequence derived from alignment at S-firma_F_contig10379:1838..2755+ (Sphaerotrichia firma ET2_F female)
ATGCAGTGTCACACACCGAAAGAGATGCAGTGTCACACACCGAAAGAGGA
CACAGTGCGGAGTTACGCGCGCGAGACGGTTACTAAGGAGGCCGATGACA
TCGACAACGACGGTGGAGACGACATGGCCATCGCGTCAACGGCGAGCGGC
AGCGAAGACGAAGGGGTCAGGTCGTCCACGGCAAGCGACAGCGAAGACAA
GAGGCTCGTGGAGTACACGGTGAACGACAGCGAACGCGAAGGGCTAGTGC
CGTACACGGAGAGCGACGACAGCGAAGACGAACCAATCGCGTCATCAAGA
CCGGCGAGTGGACGCGGAACGACAGCCCGGAAGGTCGCAAGCGCCGTTCG
GCGTGCTTCCCACCCTCCGGTCGCGAGCGAGATGGCCCAGACAAAGGAGA
AAGACCAAACGGTCGGAAAACAACGGGCGTCCAAGTCTGTACCGTTGGTA
TCCAGGTTTGCCCTCGACCTGTACGACGTACGGAACATGGGCGAACCCGC
AGTGAGCACAGCAAGCCCGCCGGGCTCAACACCCTGTGGCAAGGGCGACA
CAGTGCGGAGTTACGCGCGCGAGACGGTTACTAAGGAGGCCGATGACATC
GACAACGACGGTGGAGACGACATGGCCATCGCGTCAACGGCGAGCGGCAG
CGAAGACGAAGGGGTCAGGTCGTCCACGGCAAGCGACAGCGAAGACAAGA
GGCTCGTGGAGTACACGGTGAACGACAGCGAACGCGAAGGGCTAGTGCCG
TACACGGAGAGCGACGACAGCGAAGACGAACCAATCGCGTCATCAAGACC
GGCGAGTGGACGCGGAACGACAGCCCGGAAGGTCGCAAGCGCCGTTCGGC
GTGCTTCCCACCCTCCGGTCGCGAGCGAGATGGCCCAGACAAAGGAGAAA
GACCAAACGGTCGGAAAACAACGGGCGTCCAAGTCTGTACCGTTGGTATC
CAGGTTTGCCCTCGACCTGTACGACGTACGGAACATGGGCGAACCCGCAG
TGAGCACAGCAAGCCCGCCGGGCTCAACACCCTGTGGCAAGGGC
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