mRNA_S-firma_F_contig10359.510.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10359.510.1
Unique NamemRNA_S-firma_F_contig10359.510.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10359.510.1 vs. uniprot
Match: A0A6H5K9B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B4_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 6.960e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:    3 EGFRCYESSLGGAGVLWHGDTVPPEFLEAA 92
            EGF+CYE+S+GG GVL+HGD VPP F+  A
Sbjct:  332 EGFKCYETSIGGDGVLFHGDAVPPPFVATA 361
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10359.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9B4_9PHAE6.960e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10359contigS-firma_F_contig10359:1638..2063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.4880843-CDS-S-firma_F_contig10359:1637..20151622815567.4880843-CDS-S-firma_F_contig10359:1637..2015Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10359 1638..2015 +
1696949421.4136474-CDS-S-firma_F_contig10359:1637..20151696949421.4136474-CDS-S-firma_F_contig10359:1637..2015Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10359 1638..2015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.502939-UTR-S-firma_F_contig10359:2015..20631622815567.502939-UTR-S-firma_F_contig10359:2015..2063Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10359 2016..2063 +
1696949421.4261706-UTR-S-firma_F_contig10359:2015..20631696949421.4261706-UTR-S-firma_F_contig10359:2015..2063Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10359 2016..2063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10359.510.1prot_S-firma_F_contig10359.510.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10359 1638..2015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10359.510.1

>prot_S-firma_F_contig10359.510.1 ID=prot_S-firma_F_contig10359.510.1|Name=mRNA_S-firma_F_contig10359.510.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=126bp
RRASGATRALSEGPGCCGTATPSRQSFWRQLQRRRQRGTGTAAAGQRRGP
RNLAGFSRGWRTEKGRRWGSPRPWRSPSPPPCPPWLRGLDGGDHGGNLAR
LRQARESARPPCPPSFARLAGCAGL*
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mRNA from alignment at S-firma_F_contig10359:1638..2063+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10359.510.1 ID=mRNA_S-firma_F_contig10359.510.1|Name=mRNA_S-firma_F_contig10359.510.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=426bp|location=Sequence derived from alignment at S-firma_F_contig10359:1638..2063+ (Sphaerotrichia firma ET2_F female)
CGGAGGGCTTCAGGTGCTACGAGAGCTCTCTCGGAGGGGCCGGGGTGTTG
TGGCACGGCGACACCGTCCCGCCAGAGTTTTTGGAGGCAGCTGCAGCGGC
GGCGGCAGCGAGGGACAGGGACGGCGGCGGCCGGACAGAGGCGGGGCCCG
AGGAATCTGGCGGGTTTCTCGCGCGGTTGGCGCACCGAGAAGGGAAGGAG
GTGGGGGTCGCCGCGGCCGTGGCGATCGCCGTCGCCGCCGCCGTGCCCGC
CGTGGTTGCGAGGTTTGGACGGAGGGGATCACGGTGGTAATTTAGCCCGG
CTGCGTCAGGCACGGGAGAGCGCTCGTCCCCCGTGTCCCCCTTCCTTTGC
GCGGCTGGCTGGCTGTGCGGGGCTTTGACGGCCTCGCAAAGCTGCTTTAG
TGGGTTTTTTTTTGCAGTGTGGTGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10359:1638..2063+

>mRNA_S-firma_F_contig10359.510.1 ID=mRNA_S-firma_F_contig10359.510.1|Name=mRNA_S-firma_F_contig10359.510.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=756bp|location=Sequence derived from alignment at S-firma_F_contig10359:1638..2063+ (Sphaerotrichia firma ET2_F female)
CGGAGGGCTTCAGGTGCTACGAGAGCTCTCTCGGAGGGGCCGGGGTGTTG
TGGCACGGCGACACCGTCCCGCCAGAGTTTTTGGAGGCAGCTGCAGCGGC
GGCGGCAGCGAGGGACAGGGACGGCGGCGGCCGGACAGAGGCGGGGCCCG
AGGAATCTGGCGGGTTTCTCGCGCGGTTGGCGCACCGAGAAGGGAAGGAG
GTGGGGGTCGCCGCGGCCGTGGCGATCGCCGTCGCCGCCGCCGTGCCCGC
CGTGGTTGCGAGGTTTGGACGGAGGGGATCACGGTGGTAATTTAGCCCGG
CTGCGTCAGGCACGGGAGAGCGCTCGTCCCCCGTGTCCCCCTTCCTTTGC
GCGGCTGGCTGGCTGTGCGGGGCTTTGACGGAGGGCTTCAGGTGCTACGA
GAGCTCTCTCGGAGGGGCCGGGGTGTTGTGGCACGGCGACACCGTCCCGC
CAGAGTTTTTGGAGGCAGCTGCAGCGGCGGCGGCAGCGAGGGACAGGGAC
GGCGGCGGCCGGACAGAGGCGGGGCCCGAGGAATCTGGCGGGTTTCTCGC
GCGGTTGGCGCACCGAGAAGGGAAGGAGGTGGGGGTCGCCGCGGCCGTGG
CGATCGCCGTCGCCGCCGCCGTGCCCGCCGTGGTTGCGAGGTTTGGACGG
AGGGGATCACGGTGGTAATTTAGCCCGGCTGCGTCAGGCACGGGAGAGCG
CTCGTCCCCCGTGTCCCCCTTCCTTTGCGCGGCTGGCTGGCTGTGCGGGG
CTTTGA
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