mRNA_S-firma_F_contig10352.503.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10352.503.1
Unique NamemRNA_S-firma_F_contig10352.503.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10352.503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10352contigS-firma_F_contig10352:2341..3698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size421
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.90279-CDS-S-firma_F_contig10352:2340..25011622815566.90279-CDS-S-firma_F_contig10352:2340..2501Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10352 2341..2501 +
1696949420.9997003-CDS-S-firma_F_contig10352:2340..25011696949420.9997003-CDS-S-firma_F_contig10352:2340..2501Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10352 2341..2501 +
1622815566.9168582-CDS-S-firma_F_contig10352:3438..36971622815566.9168582-CDS-S-firma_F_contig10352:3438..3697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10352 3439..3697 +
1696949421.0112002-CDS-S-firma_F_contig10352:3438..36971696949421.0112002-CDS-S-firma_F_contig10352:3438..3697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10352 3439..3697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10352.503.1prot_S-firma_F_contig10352.503.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10352 2341..3697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10352.503.1

>prot_S-firma_F_contig10352.503.1 ID=prot_S-firma_F_contig10352.503.1|Name=mRNA_S-firma_F_contig10352.503.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=140bp
PQLSAYTQPSSCRPQDSMKFFYQASVAAVLLGCGALLADAAFTSQMMVSA
VVACATVVEATAVTTADGGFSSPHRTLKTKGSTPSPTPAIDYTASPTGTR
SGGRGRDDDSDDDDFVFLLSDSPTPSGVTAAPTASPTVSS
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mRNA from alignment at S-firma_F_contig10352:2341..3698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10352.503.1 ID=mRNA_S-firma_F_contig10352.503.1|Name=mRNA_S-firma_F_contig10352.503.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1358bp|location=Sequence derived from alignment at S-firma_F_contig10352:2341..3698+ (Sphaerotrichia firma ET2_F female)
CCTCAGCTTTCAGCTTACACCCAACCCTCCTCCTGCAGGCCGCAAGACAG
CATGAAGTTCTTCTACCAGGCCTCCGTGGCAGCCGTGCTGCTTGGGTGTG
GTGCCCTGCTTGCGGATGCCGCGTTCACCTCACAAATGATGGTCTCTGCC
GTGGTTGCTTGGTGAGAGAGAGGTGCCTTGCTTACCGTGCCAATCGGAGG
AACAACCTCGATCGCCGCACTCCGTTCCCAGTTCCCAATCCCGTGAAAGG
GCAGTCAAAAGCTGCAGCAAGGGGGTGATATTTGCTAGGTGATTTTAGTC
TGGCAGTGTCGTTTCTGCGCGGAGCGCATCAGACTCTGGTTAGCTAGGCT
AATCAATGCCAGCAGTAGGTCGCCGCTGTTCGAGCGATTTGCAAGCAACC
ATCACTGTTTGGACGGTGCGCTCTGTCCGGACGTGATTGAAAAATCTGTA
CGATACCGACGGGGGCAGCAAGCTACTTGTGCTGATGTGTGAGATAGGAA
ATCATTGATGCTACGTTCTAGGCCTTGTCTTCGTCTCTCTCTCTCTCGCT
CGCTCTCGAACGGGCAGGAACGGAGTGTACCCAACCGTGCAATGTGTCGA
TCACCCCGAGATTTGTTCTGTTTCCACCTGCCCTCTAACGTTCGAACTGG
GCTTGCATCGGCAGCAGTACTGTAGAACAGTGGTGACACCCAGTGACACA
CCCAAATCTCTCCGAGAAAAGGCCACGTGAGTTGCCGAAAAGGTATCTCG
AACCCTAGTCTAACCCTCGATATACTACTGTAGACACCTACATACTGGTA
GTCCACACTCGTTGACCTGGGGGGTGACATAGAGTGCGTGGAAAAAACAG
TAGCAACAGGAAGACAAAGGTAGAAGCAGCAGTTCTAGGCCTACCGCGTA
GCAATCGATTTCGGCTCACAATATTTTCGATTGCGACGATCTCAAGTCAA
GCGGGTTCCGTGAAGAAAGAACAAGCATCATTGAATCAACGTTCTACATA
CGATTTGCACGGGATTTATCCTCCCCCTTCAGTTTGCCTCCTCAACAGCC
CCCGCACCCCCCGCCCTCCGTTGTGCTCGCCGTACTTGAAACTGCAAGTG
CGACGGTTGTCGAAGCGACGGCCGTTACCACAGCCGACGGAGGCTTTTCC
TCTCCCCACCGAACCCTCAAGACGAAGGGAAGCACTCCCTCGCCGACGCC
CGCGATCGACTACACCGCATCCCCGACAGGCACGCGGAGCGGGGGTCGTG
GTCGAGACGACGACAGCGATGACGATGACTTCGTCTTCCTCCTCTCCGAC
TCGCCGACACCGTCGGGTGTCACGGCGGCTCCGACCGCATCTCCGACAGT
CAGCAGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10352:2341..3698+

>mRNA_S-firma_F_contig10352.503.1 ID=mRNA_S-firma_F_contig10352.503.1|Name=mRNA_S-firma_F_contig10352.503.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=840bp|location=Sequence derived from alignment at S-firma_F_contig10352:2341..3698+ (Sphaerotrichia firma ET2_F female)
CCTCAGCTTTCAGCTTACACCCAACCCTCCTCCTGCAGGCCGCAAGACAG
CATGAAGTTCTTCTACCAGGCCTCCGTGGCAGCCGTGCTGCTTGGGTGTG
GTGCCCTGCTTGCGGATGCCGCGTTCACCTCACAAATGATGGTCTCTGCC
GTGGTTGCTTGCCTCAGCTTTCAGCTTACACCCAACCCTCCTCCTGCAGG
CCGCAAGACAGCATGAAGTTCTTCTACCAGGCCTCCGTGGCAGCCGTGCT
GCTTGGGTGTGGTGCCCTGCTTGCGGATGCCGCGTTCACCTCACAAATGA
TGGTCTCTGCCGTGGTTGCTTGTGCGACGGTTGTCGAAGCGACGGCCGTT
ACCACAGCCGACGGAGGCTTTTCCTCTCCCCACCGAACCCTCAAGACGAA
GGGAAGCACTCCCTCGCCGACGCCCGCGATCGACTACACCGCATCCCCGA
CAGGCACGCGGAGCGGGGGTCGTGGTCGAGACGACGACAGCGATGACGAT
GACTTCGTCTTCCTCCTCTCCGACTCGCCGACACCGTCGGGTGTCACGGC
GGCTCCGACCGCATCTCCGACAGTCAGCAGCTGCGACGGTTGTCGAAGCG
ACGGCCGTTACCACAGCCGACGGAGGCTTTTCCTCTCCCCACCGAACCCT
CAAGACGAAGGGAAGCACTCCCTCGCCGACGCCCGCGATCGACTACACCG
CATCCCCGACAGGCACGCGGAGCGGGGGTCGTGGTCGAGACGACGACAGC
GATGACGATGACTTCGTCTTCCTCCTCTCCGACTCGCCGACACCGTCGGG
TGTCACGGCGGCTCCGACCGCATCTCCGACAGTCAGCAGC
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