mRNA_S-firma_F_contig1035.497.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1035.497.1
Unique NamemRNA_S-firma_F_contig1035.497.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: D8LBP8_ECTSI (Nudix (Nucleoside diphosphate linked moiety X)-type motif 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP8_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 1.440e-171
Identity = 251/337 (74.48%), Postives = 287/337 (85.16%), Query Frame = 3 
Query:   33 MNAFRLGLASRVVFGARPCSSLRSIAAARSSA--------------FSQQARKRDESTCFQQMGPRRPSSSTTVSNVGLPIPLPFKEGKFNSVTVDIAKVQVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDRHEGAMWKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLM-PKGTGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAIVADMLEKPEDRELTRSLHESVIPNRAPYFLYHRNA 998
            MN+ R GL+SRVV G RP   LR ++AA SS               FS + ++ + S+       R  SSSTT+SNVGLP+PLPF++ KFNS TVDIAK+QVEDTADFALKLFATV++LRKD KAA+WLKVPTDFCH+ISIASHYGFQ HHTQPKY+MMYLWLPEDVPDKVP +GTHH+GVAGCVMN ++EVLLV+D+H+GAMWKFPGGLAD+GEGIGEAAVREVWEETGV TEFRSVLSMRHQHE+QFGNSDLYFICRLM P+ TGA  LDI KCNHEIADACWMPL+QFKKQTRHSMLA+VADMLEKPE++ELTRSLHES IP+RAPYFLYHR++
Sbjct:    1 MNSLRSGLSSRVVGGVRPSLKLRRVSAASSSVRQRRQAEDSGNLTPFSFERKQVNSSSISAAGSCRWSSSSTTISNVGLPVPLPFEQSKFNSATVDIAKIQVEDTADFALKLFATVDKLRKDGKAALWLKVPTDFCHFISIASHYGFQLHHTQPKYLMMYLWLPEDVPDKVPPYGTHHVGVAGCVMNSQDEVLLVKDKHKGAMWKFPGGLADVGEGIGEAAVREVWEETGVMTEFRSVLSMRHQHEMQFGNSDLYFICRLMLPEDTGA--LDINKCNHEIADACWMPLDQFKKQTRHSMLAVVADMLEKPEEKELTRSLHESAIPDRAPYFLYHRHS 335
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BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: A0A836C878_9STRA (Nucleoside diphosphate linked moiety X-type motif 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C878_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.020e-83
Identity = 138/272 (50.74%), Postives = 185/272 (68.01%), Query Frame = 3 
Query:  198 SSTTVSNVGLPIPLPFKEGKFNSVTVDIAKVQVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHY-GFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDRHEGAMWKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLMPKGTGAGAL------DITKCNHEIADACWMPLEQFKKQTRHSMLAIVADML-EKPEDRELTRSLHESVIPNRAPYFLYH 989
            S +  S  GLP   P+KEG++NS +++  KV+ +DTADFA KL ATV  L+++ K+AVWLKVP D+ HY+ +A+   GF+ HH  P  V+M  WL + VPDKVP F THH+GVAGCV++ +  VL+V++RH  A+WKFPGGLA+ GE +G AA REV EETGV + F  +L+ R QH +QFGNSDLYFICR M + TG          ++  C HEIA+A WMPLE+F  Q  H M+ +VA ML E P++ EL     ES+  +R PY +Y+
Sbjct:   52 SGSLPSVEGLPDLFPYKEGQYNSASINAGKVRAQDTADFAAKLSATVAHLQREEKSAVWLKVPMDYAHYLPVAARAAGFRPHHALPDAVLMVRWLLDGVPDKVPPFATHHVGVAGCVLDARGRVLVVKERHPRALWKFPGGLAEAGEDLGAAAAREVEEETGVRSAFAGLLAFRQQHAMQFGNSDLYFICR-MTRRTGEXXXXXXXXQELRPCAHEIAEARWMPLEEFAAQNTHPMMGVVAKMLMEGPQNHELKEETQESIFGSRPPYKMYY 322
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BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: A0A4D9D5W2_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5W2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.240e-53
Identity = 103/259 (39.77%), Postives = 152/259 (58.69%), Query Frame = 3 
Query:  234 PLPFKEGKFNSVTVDIAKVQVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDRHEGAM-WKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLMPKGTGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAIVADML------EKPEDRELTRSLHESVIPNRAPYFLYH 989
            PL      FN+V +D   ++V DT+DF  +L  TV QLR++ ++++W++V     H + +   +GF+ HH +P+ V+M LWL     +KVP + TH +GVAG   N K EVLLV++  +    WK PGG  + GE  G AAVREV EETGV + F  +L++RHQH+  FG  D+Y + RL      A   ++  C+ EI DA W+PL+QF+ +  H +L  VA++       E P   ++    H S++P R PY LYH
Sbjct:   27 PLEVTPMPFNAVMLDTDNMRVTDTSDFTTRLLVTVQQLRREGRSSMWVRVHALNGHLLGVLGTFGFKCHHCEPESVIMNLWLQPGKENKVPPYATHLVGVAGFCQNKKGEVLLVKEGSKNLSGWKLPGGYINPGEEFGAAAVREVEEETGVRSSFEGLLALRHQHQQSFGVDDIYVVTRLQ-----ALTDELRLCSSEIQDARWVPLKQFQDEASHPILRTVAELTRGWGQGEGPVRGDIVEREHPSILPGRPPYKLYH 280
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BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: A0A835YXX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX9_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.670e-52
Identity = 112/286 (39.16%), Postives = 156/286 (54.55%), Query Frame = 3 
Query:  198 SSTTVSNVGLPIPLPFKEGKFNSVTVDIAKVQVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVR--------DRHEGAMWKFPGGLADLGEGIGEAAVREVWEET-----GVETEFRSVLSMRHQHEVQFGNSD-LYFICRLMPKGTGAGALDITKCNHEIAD--ACWMPLEQFKKQTRHS--MLAIVADMLEKPEDR-ELTRSLHESVIPNRAPYFL-YHRN 995
            SS+  +  G+P P P++EG++NS TV+  KV  EDTADFA  LFAT+  LR ++K A+WL+VP DF HY+ IA HYGF+FHHT+   VMM LWL  DV +++P F THH+ V+  V N    VL+VR             + + FPGGLA+ GE + +AA R V         G    FR VL++R  H+   G +  L+F+C L                       A W+P+   ++Q      + A VA +LE   +R E+   +H S +P R PY L YHR+
Sbjct:   57 SSSIPTMTGMPDPFPYEEGRYNSATVNAGKVYAEDTADFATSLFATITHLRHEKKNALWLRVPMDFAHYVPIAGHYGFKFHHTEENAVMMVLWLRGDVANRIPPFATHHVDVSAVVTNADGHVLVVRRPPXXXXXXXXXXSSFTFPGGLAERGEDLADAAARAVAAAAPRALGGGGVAFRGVLALRQAHDAHAGGAGALHFLCHLTAAXXXXXXXXXXXXXXXXXXXXAQWVPVSALREQGEAGDVVAAAVAQLLEGGAERSEMAAEVHASAVPGRPPYTLFYHRD 342
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BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: K8Z7W9_NANGC (Nucleoside diphosphate-linked moiety x motif 6 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z7W9_NANGC)

HSP 1 Score: 191 bits (485), Expect = 1.150e-51
Identity = 103/259 (39.77%), Postives = 151/259 (58.30%), Query Frame = 3 
Query:  234 PLPFKEGKFNSVTVDIAKVQVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDRHEGAM-WKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLMPKGTGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAIVADML------EKPEDRELTRSLHESVIPNRAPYFLYH 989
            PL      FN+V +D   ++V DT+DF  +L  TV QLR++ ++++W++V     H + +   +GF+ HH +P+ V+M LWL     +KVP + TH +GVAG   N K EVLLV++  +    WK PGG  + GE  G AAVREV EETGV + F  +L++RHQH+  FG  D+Y + RL      A   ++  C+ EI DA W+PL+QF+ +  H +L  VA++       E P    +    H S++P R PY LYH
Sbjct:  123 PLEVTPMPFNAVMLDTDNMRVTDTSDFTTRLLVTVQQLRREGRSSMWVRVHALNGHLLGVLGTFGFKCHHCEPESVIMNLWLQPGKENKVPPYATHLVGVAGFCQNKKGEVLLVKEGSKNLSGWKLPGGYINPGEEFGAAAVREVEEETGVRSSFEGLLALRHQHQQSFGVDDIYVVTRLQ-----ALTDELRLCSSEIQDARWVPLKQFQDEASHPILRTVAELTRGWGEGEGPVRGVIVEREHPSILPGRPPYKLYH 376
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BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: UPI00142563F6 (nucleoside diphosphate-linked moiety X motif 6-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142563F6)

HSP 1 Score: 179 bits (453), Expect = 7.600e-48
Identity = 103/264 (39.02%), Postives = 154/264 (58.33%), Query Frame = 3 
Query:  255 KFNSVTVDIAKV-----QVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMN-DKNEVLLVRDRHEGAMWKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEV--QFGNSDLYFICRLMPKGTGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAI-VADMLEKP-----EDRELTRSLHESVIPNRAPYFLYHRNASS 1004
            +FN +TV+I+ +     +  +   F + L  ++   R DR++  WLKVP +  H I  A+  GF+ HH +  Y M+  WL E+ P +VP + TH LGV+G V+N D  EVL+V+D+H  + WKFPGG A+LGE + E AVREV+EET ++TEF+SVL+ R QH +   FG SD YF+CRL P        DI  C  E+ DA W+ ++       H++L+  VA ++ +      +D ++     +SV    A Y L+HR+  S
Sbjct:   44 RFNGITVNISNLPATWLEFPEPWQFGIALADSLKLWRNDRRSCAWLKVPIESSHLIKTAAAQGFKLHHAEGDYTMLNKWLGEE-PSRVPMYATHQLGVSGFVLNEDTEEVLMVQDKHRISRWKFPGGYANLGEDLSETAVREVFEETNIQTEFQSVLAFRQQHSLPYNFGRSDFYFVCRLKPL-----TFDIKACESELVDAQWIKVKDILVSDDHTLLSKRVATLIREGLRNGFKDVDIGMDQLDSVYKG-ATYKLFHRSFGS 300
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BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: UPI00142569A1 (nucleoside diphosphate-linked moiety X motif 6-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142569A1)

HSP 1 Score: 176 bits (445), Expect = 3.550e-47
Identity = 83/206 (40.29%), Postives = 133/206 (64.56%), Query Frame = 3 
Query:  246 KEGKFNSVTVDIAKVQVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDR-HEGAMWKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLMPKGTGAGALDITKCNHEIADACWMPLEQF 860
            K+ ++N + ++I + + +    F  +L  ++ +        VWLK+  +   +I++A+ +GF FHH Q  YVMM  WLP D P+++P + TH++GVAG V+N+ N+VL+V++R ++ A WK PGG+AD GE +G  A REV+EETG+E EF S+L+ R QH  +FG SDLYF+C +    +     +I  C HEI+D  WM ++++
Sbjct:    7 KKDQYNGIIINIKEHKCDSEKIFNDRLKRSLEEWNTSGIRGVWLKIAIECAAFIAVAAKHGFVFHHAQTDYVMMIKWLPTDEPNQLPGYTTHYVGVAGFVVNENNQVLVVKERFYKKANWKLPGGMADPGEDLGVTAKREVFEETGIEAEFISLLAFRQQHGFRFGQSDLYFVCEMKALNS-----EIASCQHEISDCMWMNVDEY 207
[Close]
BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: A0A1X7TYR1_AMPQE (Nudix hydrolase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TYR1_AMPQE)

HSP 1 Score: 176 bits (447), Expect = 3.990e-47
Identity = 93/242 (38.43%), Postives = 143/242 (59.09%), Query Frame = 3 
Query:  258 FNSVTVDIAKVQ-VEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDRH----EGAMWKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLMPKGTGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAIVADMLEKPEDRELTRSLHESVIPNR 968
            FN VTV       + D   F  KL A++     + +  +W++VPT+    I IA+  GF FHH QP Y M+  WLP+D P+K+P +  H++GV G V+NDKN++L++++++    +  +WK PGG+AD GE I E A+REV EETG+ETEF S+L  RH H+ ++GNSD +FIC L P       +D+     EI++  W+ LE++           +AD    P+  E+ R + +S + +R
Sbjct:   33 FNGVTVKTHHFNDIGDAESFKEKLIASLRTWELEGRRGIWMQVPTEKAEMIPIATKLGFDFHHAQPGYAMLTKWLPKDEPNKLPHYANHYVGVGGFVLNDKNDLLVIQEKYLTSLKRPIWKIPGGMADPGENIAETAIREVKEETGIETEFVSLLCFRHMHQFRWGNSDFFFICLLKPL-----TIDVVIDRSEISEYKWIKLEEY-----------IAD----PDTLEINRLIAQSFLSSR 254
[Close]
BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: UPI000F555542 (nucleoside diphosphate-linked moiety X motif 6-like n=2 Tax=Pocilloporidae TaxID=46729 RepID=UPI000F555542)

HSP 1 Score: 175 bits (444), Expect = 1.020e-46
Identity = 102/270 (37.78%), Postives = 154/270 (57.04%), Query Frame = 3 
Query:  237 LPFKEGKFNSVTVDIAKVQVE-DTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMN-DKNEVLLVRDRH--------EGAMWKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQ--FGNSDLYFICRLMPKGTGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAIVADMLEKP------EDRELTRSLHESVIPNRAPYFLYHR 992
            L + E  FN VTV++ ++  +    +F++KL  ++ Q RK+RK +VW+KVP    + I +A  +GF +HH    + M+  WLP+   +KVP + TH +GV+G V+N +KNEVL+V+D++        +  +WKFPGGL+D GE I E AVREVWEETG+  EF+S+L  R QH+++  F  SD+Y +CR+ P   G     I+ C  EIA   WM L      T  + L  +A  L K       E  ++  +   S +     + L+HR
Sbjct:   31 LHWNEAYFNGVTVNLDQLGEQCSPGEFSVKLTRSIQQWRKERKKSVWMKVPIVQSYLIPVAFEHGFSYHHAVGDHAMLLKWLPKKEHNKVPPYATHQVGVSGLVLNREKNEVLVVQDKNLLKIGRRLKRPVWKFPGGLSDEGESIEETAVREVWEETGIRAEFKSILLFRQQHKMKNAFDKSDVYVVCRMEPLSFG-----ISHCEDEIAQCQWMELSTLLTHTDTTPLTKLAARLAKHGLKNGFESVDIVANSMRSWVNPSQTFSLFHR 295
[Close]
BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Match: A0A1S3I2N1_LINUN (nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I2N1_LINUN)

HSP 1 Score: 174 bits (442), Expect = 1.100e-46
Identity = 93/257 (36.19%), Postives = 143/257 (55.64%), Query Frame = 3 
Query:  228 PIPLPFKEGKFNSVTVDIAKVQVEDTADFALKLFATVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLPEDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDR-HEGAMWKFPGGLADLGEGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLMPKGTGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAIVADMLEKPEDRELTRSLHESVIPNRAPYFLYHRN 995
            P  LP    +++ V +DI K   E   DF  KL  ++    K+    VW+K+P D    + I + + F ++H +P YVMM  WLP+D  + +P +   +LG AG V+N + ++L+++++ H   MWK PGGLAD GE IGEAA REV+EETGV  +F+S++  RH H+ + G  D YFIC + P        +ITKC+ EI+  CWM L+++     H  ++    M  +     + R    S+ P   P+F   +N
Sbjct:    6 PNTLPAMRDRYDGVIIDINKQTYETEEDFEKKLVNSLCSWSKEAVRGVWVKIPLDMATLVPICAKHKFVYNHAKPSYVMMTRWLPQDEENCIPPYANQYLGCAGFVVNSEKKLLVIQEKYHVQKMWKLPGGLADTGEDIGEAAEREVFEETGVRCKFQSIICFRHMHKFRHGLDDFYFICLMEPMSK-----EITKCDREISACCWMDLDEY---INHPDVSHTNKMFAECYLNMIARKEKLSIQPTVVPHFSGTKN 254
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1035.497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP8_ECTSI1.440e-17174.48Nudix (Nucleoside diphosphate linked moiety X)-typ... [more]
A0A836C878_9STRA2.020e-8350.74Nucleoside diphosphate linked moiety X-type motif ... [more]
A0A4D9D5W2_9STRA2.240e-5339.77Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A835YXX9_9STRA5.670e-5239.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8Z7W9_NANGC1.150e-5139.77Nucleoside diphosphate-linked moiety x motif 6 n=2... [more]
UPI00142563F67.600e-4839.02nucleoside diphosphate-linked moiety X motif 6-lik... [more]
UPI00142569A13.550e-4740.29nucleoside diphosphate-linked moiety X motif 6-lik... [more]
A0A1X7TYR1_AMPQE3.990e-4738.43Nudix hydrolase domain-containing protein n=1 Tax=... [more]
UPI000F5555421.020e-4637.78nucleoside diphosphate-linked moiety X motif 6-lik... [more]
A0A1S3I2N1_LINUN1.100e-4636.19nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=757... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1035contigS-firma_F_contig1035:17879..23309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LBP8
Preferred nameNUDT6
PFAMsNUDIX
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0008083,GO:0008150,GO:0009966,GO:0010469,GO:0010646,GO:0023051,GO:0030545,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0065007,GO:0065009,GO:0098772
Evalue5.09e-177
EggNOG OGsKOG0648@1|root,KOG0648@2759|Eukaryota
Description8-hydroxy-dADP phosphatase activity
COG categoryL
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-27_003180.1
Exons6
Model size1744
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1035.497.1prot_S-firma_F_contig1035.497.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1035 18610..23277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.4878967-UTR-S-firma_F_contig1035:17878..186091622815566.4878967-UTR-S-firma_F_contig1035:17878..18609Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 17879..18609 -
1696949420.7028658-UTR-S-firma_F_contig1035:17878..186091696949420.7028658-UTR-S-firma_F_contig1035:17878..18609Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 17879..18609 -
1622815566.5695517-UTR-S-firma_F_contig1035:23277..233091622815566.5695517-UTR-S-firma_F_contig1035:23277..23309Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 23278..23309 -
1696949420.7824478-UTR-S-firma_F_contig1035:23277..233091696949420.7824478-UTR-S-firma_F_contig1035:23277..23309Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 23278..23309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.5009243-CDS-S-firma_F_contig1035:18609..186851622815566.5009243-CDS-S-firma_F_contig1035:18609..18685Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 18610..18685 -
1696949420.7159815-CDS-S-firma_F_contig1035:18609..186851696949420.7159815-CDS-S-firma_F_contig1035:18609..18685Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 18610..18685 -
1622815566.5126536-CDS-S-firma_F_contig1035:19399..196081622815566.5126536-CDS-S-firma_F_contig1035:19399..19608Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 19400..19608 -
1696949420.7278872-CDS-S-firma_F_contig1035:19399..196081696949420.7278872-CDS-S-firma_F_contig1035:19399..19608Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 19400..19608 -
1622815566.5252786-CDS-S-firma_F_contig1035:20083..202741622815566.5252786-CDS-S-firma_F_contig1035:20083..20274Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 20084..20274 -
1696949420.7431772-CDS-S-firma_F_contig1035:20083..202741696949420.7431772-CDS-S-firma_F_contig1035:20083..20274Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 20084..20274 -
1622815566.5370874-CDS-S-firma_F_contig1035:20989..211601622815566.5370874-CDS-S-firma_F_contig1035:20989..21160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 20990..21160 -
1696949420.7525396-CDS-S-firma_F_contig1035:20989..211601696949420.7525396-CDS-S-firma_F_contig1035:20989..21160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 20990..21160 -
1622815566.5484564-CDS-S-firma_F_contig1035:21727..218371622815566.5484564-CDS-S-firma_F_contig1035:21727..21837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 21728..21837 -
1696949420.765667-CDS-S-firma_F_contig1035:21727..218371696949420.765667-CDS-S-firma_F_contig1035:21727..21837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 21728..21837 -
1622815566.5604632-CDS-S-firma_F_contig1035:23053..232771622815566.5604632-CDS-S-firma_F_contig1035:23053..23277Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 23054..23277 -
1696949420.7742894-CDS-S-firma_F_contig1035:23053..232771696949420.7742894-CDS-S-firma_F_contig1035:23053..23277Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 23054..23277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1035.497.1

>prot_S-firma_F_contig1035.497.1 ID=prot_S-firma_F_contig1035.497.1|Name=mRNA_S-firma_F_contig1035.497.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=327bp
MNAFRLGLASRVVFGARPCSSLRSIAAARSSAFSQQARKRDESTCFQQMG
PRRPSSSTTVSNVGLPIPLPFKEGKFNSVTVDIAKVQVEDTADFALKLFA
TVNQLRKDRKAAVWLKVPTDFCHYISIASHYGFQFHHTQPKYVMMYLWLP
EDVPDKVPAFGTHHLGVAGCVMNDKNEVLLVRDRHEGAMWKFPGGLADLG
EGIGEAAVREVWEETGVETEFRSVLSMRHQHEVQFGNSDLYFICRLMPKG
TGAGALDITKCNHEIADACWMPLEQFKKQTRHSMLAIVADMLEKPEDREL
TRSLHESVIPNRAPYFLYHRNASSPP*
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mRNA from alignment at S-firma_F_contig1035:17879..23309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1035.497.1 ID=mRNA_S-firma_F_contig1035.497.1|Name=mRNA_S-firma_F_contig1035.497.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5431bp|location=Sequence derived from alignment at S-firma_F_contig1035:17879..23309- (Sphaerotrichia firma ET2_F female)
CGTTTGTTTCCCCTCTCACACGCACGAGAACGATGAACGCATTTCGATTA
GGGCTGGCCTCCAGAGTAGTCTTCGGCGCTCGGCCATGCTCCAGCCTAAG
GAGTATAGCCGCAGCTAGGTCTTCGGCATTCTCCCAACAGGCCCGAAAAC
GCGATGAGTCGACCTGCTTTCAGCAGATGGGACCGCGTCGGCCTTCTTCC
TCCACGACGGTCAGCAACGTGGGCCTACCGATACCCCTCCCCTTCAAGGA
GGGCAAGTGAGTGCTTGAGGCTGCCAGATCCCCAGTTGGTGACGGAAGAC
GACGAGTTCGTTCCCGTGGTTTGGACCGTTTTTGAGCGTGCCTTGTCAGA
AGCGGCTGCCTGCTGGTGCAACTTCCACAGCATCATCATGTGTTCGTTCG
AGTTTTGCGAGGTAGAAACCGTCCGTGTGGTGAAGGTACAAGGTCCCGCG
GGGATCCAGCTGCTTTGGTGCGGTGGACGCACGCGGCACGCTGGCATCAG
TTCACGTCTGAAAGGCCTCGTCCTTCTGCTGATTTCCCACCTTTCGCAGA
GGGCCGAGTTTAATTGTTTAATTAAATAACTGGCTCTCTTGCGGCTGCAA
CGTGATGCACACAGTCGGACGTTACAGCAGCAGTGTAGGTACGGTGTTTC
CTACTTCGTAACATTTGGCAGTCCCGCACCTGGTGCCAGTAGTTTAGAGA
CGCTACTACATTATGCAACTGCAGTCACACAGCAGGTAGCACTTGTAGCA
CTGACTCAGCACTACGCACCTGCGCGTGGAACCCTGTTTGTCGGGAAACC
GGCGCATCGCGTTGCTGCTCAGAAAATGTTAATGTTTGTCATGGCGCACT
CAGCACCCCCCAAGGTGTGCCAGACCCTCCACTTCGAGTAAAATACACGT
ACAACAGTCTAGCACCACGCATGGAGCAGGATCAACGACCAGTCAAACAT
GGATGTCTGCAACAGCACTGCTAGTATTGTAACAGCTCCGCCAACAAAAA
TCGCACGGGAACGGAGGGGTGGCCACGAAGCAACAAGGATGTTTCGGGGG
TAATATACCGTATCACATGTAGGTCGATAATAATGATGTTGGTCGTTTGC
AACGGTGGCACCGTCTCGAGCGGCAGCGAAGGTTGGCCAACGTGCATGAA
TTGAGCAGATGGTTCATCGGCTTTATTGAATCGGCCCCTTCAATATATTT
CCACGGAATAATTGGAGCCGAGTTATACTGCGACGCACTGCCCCAGACCA
ATTTATTGGTTCCAGCGTTAGAAAGGTAGCGTTGACATCATTTCGTGTTT
AATTCGTGCCTGACATAAGTGCAACTTTCTCCGACTACTTTCGGATGCAT
CGTTTTCAACAAGGTTTTCTACTGCTGTCTCTCTTCTGTACCACATATTC
CCTATTGCTACATAGATCTGACTTTGTTTTTCTTTCTTGCCATTACTCCC
CACCCCCATACACACTGGAAAGATTCAACAGTGTGACGGTGGATATCGCC
AAGGTGCAAGTGGAGGATACGGCGGATTTCGCGCTCAAGCTGTTCGCCAC
GGTCAATCAGCTGCGCAAAGATCGCAAAGCTGGTGAGATGCACATCCAGA
AAGGGGGGGCGGAGAGAGAGACAAAGTAAATTTATAGAAATGACTTGTTT
TGCGTGTCAGGCCTGCTGTTTGATCAGCGAGGTAAAGAAGGTATTGGGTG
TAGAGTTTTGAAGCTGTGTTGAACGTGAAGGCCGAGAACGACGATGACAA
TAACAAACACAGCATCGGCAACAGCGTCAGCTTCAACACGCCCGGCCGTT
GATGTCTGCTCTCTGTCTATGAAGGACGGATTGACGTGCTCGGTGGCGAA
GGTTTTCCGTTCGGTGCCCCCCACCTCCCTCATCCTATCGCTAGAAAAAA
TCTCGTTGTCGTATTGAGTAAGTTCAAGCGCTCAATTTACAATAATAGCA
TGCGGGTAACGCCGGGCATTGGATCTCTATTTTTGGAATAGCACTTGCTG
GCTGACACGAAAAAAGAGCGATCGATGTCTTGCGTACTCCGAACACCAAC
ACTTGCTGTTGTGCTGGACGTTTCCGCCCACCCCTCTTGCCTCAACAACA
TTTCGCGCTCGACGACGCTTTGCAATGTTCACGACGACCGACGCTGCAGC
GGTGTGGCTCAAGGTGCCGACGGACTTCTGCCACTACATCTCGATAGCGT
CTCACTACGGATTCCAGTTTCACCACACGCAGCCCAAGTACGTGATGATG
TACCTGTGGCTACCCGAGGACGTGCCCGACAAGGTTCCGGCGTTCGGGAC
ACACCACCTCGGCGTTGCAGGTGCAAGATTTATTAAGCGCTACAACATGC
ACCCGGAGCAGCGGCAGCGCGCGATTGCCTGTATTAGTGCCCATTCGTTT
CATCTAAAAACAATTACGTCGGGCTTTGGGTGGGCTTGCAGCCTGTACCC
GCTGAGCAAGTATCATCTGTGGGCAATGTTCTTTGGGATTTTATGTTTTG
CGTGCGCCTCTTCTCTCTCTCTCTATCTCTCTCTCGATATAGTTGTCTCG
GTACCATATGAAGATGCACCACTTCCCTCCACCGAAAAAGTTGACGCGCA
CGGTTTGGGTTGGTGCGGCTCGGTGCGTCAGGGGCCGCTGATTCACGTCT
AAGGCGAAGTAGGCTACAAGAGTTTTCGGTGGCTTTGATACTTGGTTGTT
TGCTGGAAGACACGACCTGGAGCTATCTAGGGAACGTCATGCCGGCTCAC
CGCGAGAGTCAGGAGAGCGTTGAGCAACTCCTTTTGTTTCGAGAACAACG
CTCGGCACGCGCACAAGCGGAGCTTGCGGCTCTAGGGTGTCGCGAAAGCG
GGCGGTTTAGTGACCTCACTCGTTTTGCCCGTGCAAATTGTCTTGAGCGT
CCATCAACACTCTTCACCCCGAACAACCACCAAAAACAACAACCACCACC
ACAACCACCACAACAAAATATTGGTGACATGGAACAGGGGACACGTGACC
CTCTCAAATTTTCACAACCATTGCCGCATATGCAGGCTGCGTGATGAACG
ACAAGAATGAGGTCCTTCTGGTGAGGGACAGGCACGAGGGCGCCATGTGG
AAGTTCCCTGGGGGGCTAGCGGATCTCGGGGAAGGCATCGGCGAAGCGGC
GGTCCGCGAGGTCTGGGAGGAAACCGGCGTCGAGACCGAGTTTCGCTCGG
TGCTGAGCATGAGGCACCAGCACGAGGTGAGCTAGACTTGAGCACGGCTT
GATTTCTTGATCGTGTGTTCCGCACTGTCCGGGTGTGGGGAGGACAGGGG
GGGGGGGAGTTGTGTGATCGATTGGCTTATCTGGTGTTTGTTTCGATACC
ATGATGTGCTTTTTTCAGTTTTGTATCGGCATAACTCGAGTTTGAAAGTC
ATCCCCACACGTGAAGCACGTACCATTAGCCTTTTCCCCGAAGAACATAT
GGGCTCTGGTTTGCGAAGAGGCTACACGAGAGGCTGAGATTCGAGGTTCG
GTGTAGATACTCCGTATGTGTTTCTGGTCCCCGTTGTTGTACTACCAGGT
ACTGTATTTCTCGATTTTAGGTGTGTTGAGACACGTGACAGGAGCACAGG
CAGTGGTGTGTGATGACACCAGCACAAAATAACACGCAATCCCAACGACA
ACTTGCGCCCCTCTCTCTTGTCATCCTCCGTGCTTTATCTTTCGTCTGCA
GGTGCAGTTCGGCAACTCGGACTTGTACTTCATCTGCCGGCTGATGCCCA
AGGGGACGGGCGCGGGGGCGCTCGACATCACCAAGTGCAACCACGAAATC
GCGGACGCGTGCTGGATGCCGTTGGAGCAGTTTAAGAAGCAAACCCGGCA
TTCGATGCTGGCTATAGTGGCGGACATGCTCGAAAAGCCCGAGGACAGGG
AGCTCACCAGGTTCGTTAGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTACTGCCGCTGTTGGATTGTTTTTTTTGTCTCTGGAT
GATGCAACGACTTCACGAGTAGGGGAACAAGTTGGGGAGCGAAGCAAGGC
GTATCCAACTGACTGCTACTTCTGTAGCGGCACTACACAGCTCTCGCATT
TCTTAGCATAACGTACATCCTGGAGACCAGCAGAGACCCACGTACAATCG
GAGCAATAGAGCCCCACGTGGCTGTAGGTTGTGTACGAATATCCGGTGAT
GCTCGTGTTGGTATCTACCTTTGGGCATCTGTAGTCGCGGGAGGACGCGA
AGCTGCCAAGAATGGATAAGTCTTCAGAAGCCCTCCCGCCGCAAAGCAGA
TCTGGAACTCCGTTTCGCGAGAGACTTGTGCTCGAGAGCGGACCCAAAAG
ACCTCCAGCTTAAATGCGTTCGAGTTTGCTTCTGCGCTACCGTCCCACAG
TTCGCCTCGATGTTGGCGGTGGCCGATATGACATTTGTAGTATTTCCCCA
CGGCGGCGCAAAGCTAGCCAGGTACAAACGAGTGAGCCGGGCCTTCTTGC
CCCGACAGCTGGGAAGGACTCACGCAACGCTCGCGAATTTTCTTTGTCCT
CCCGCTCACCGCCTAACTTCCAACTTCCTCCTGCCATTCTTGGACTCGCT
CGTTATTTGTCTCTCTTTCCGCAGGAGTCTGCACGAGTCCGTGATTCCCA
ACCGAGCGCCTTACTTCCTGTACCACCGCAACGCATCTTCCCCACCATAA
AGGGACGCGAGAAGGAGAGAGAGAGCGCGCGCGCGTGGGAAACGACGGTG
TCCGCTGTTGTAGATACGTTCTGCTGTGGATTTTTTGTTGGCCTTGCGTG
CTCGCCGTCGGTATTTAGCGTTGGAACGAGTGAACGGCCTTTGTGTATAA
CCTTGATCGTTTCTTGCCAACGGTGTTGGTGTAGGTGTTGGTGGTGGGGT
GGTGATGCCTGGAGTGGGAGGGGCGAAACCGGCGGGTGTTCGGGTGTACG
GAAGCTGCTTAGCCACCTGCAGTAGCTTGTGAGGGGGCGAGTTGTGAGGG
GACGGGGTGTTGGTTTGGGGGCGGAAAGGGCTTGTATTTTTGTCGTCGGA
TCACACGTACGGCGCTTTTTGTTTTCGTCATGTGTCGTGTCTTGCTTCAG
ACGAACCAGATTCAGTCCAATTACTACATTGTTGTTTCCGTCTCACGCAA
CAATCGTATCATCAGACCCTGTTGTTTCCGTCGGTGATGTAAACACTCAC
CAAATCCCATCTGTATTCTTGCCGATTTCGGCGTGATACGAATCGGCAGG
CCGCGGCGCAGGTGGTGTTTTTGTGTTAAGCGTTTTGTAATGGGAGCCCA
CATCCAAGTTTGCCCCGTCTCCCTTCCCCCCGCCCCCCAGTAGGCGAAGA
CCGAATACCAGTATTTTGGGAGTTCAAATGGAACAGAGATGCCGTTTCTA
CTGCTTCAGGGTGGCCGAGACAAACAGCCAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1035:17879..23309-

>mRNA_S-firma_F_contig1035.497.1 ID=mRNA_S-firma_F_contig1035.497.1|Name=mRNA_S-firma_F_contig1035.497.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1962bp|location=Sequence derived from alignment at S-firma_F_contig1035:17879..23309- (Sphaerotrichia firma ET2_F female)
ATGAACGCATTTCGATTAGGGCTGGCCTCCAGAGTAGTCTTCGGCGCTCG
GCCATGCTCCAGCCTAAGGAGTATAGCCGCAGCTAGGTCTTCGGCATTCT
CCCAACAGGCCCGAAAACGCGATGAGTCGACCTGCTTTCAGCAGATGGGA
CCGCGTCGGCCTTCTTCCTCCACGACGGTCAGCAACGTGGGCCTACCGAT
ACCCCTCCCCTTCAAGGAGGGCAAATGAACGCATTTCGATTAGGGCTGGC
CTCCAGAGTAGTCTTCGGCGCTCGGCCATGCTCCAGCCTAAGGAGTATAG
CCGCAGCTAGGTCTTCGGCATTCTCCCAACAGGCCCGAAAACGCGATGAG
TCGACCTGCTTTCAGCAGATGGGACCGCGTCGGCCTTCTTCCTCCACGAC
GGTCAGCAACGTGGGCCTACCGATACCCCTCCCCTTCAAGGAGGGCAAAT
TCAACAGTGTGACGGTGGATATCGCCAAGGTGCAAGTGGAGGATACGGCG
GATTTCGCGCTCAAGCTGTTCGCCACGGTCAATCAGCTGCGCAAAGATCG
CAAAGCTGATTCAACAGTGTGACGGTGGATATCGCCAAGGTGCAAGTGGA
GGATACGGCGGATTTCGCGCTCAAGCTGTTCGCCACGGTCAATCAGCTGC
GCAAAGATCGCAAAGCTGCGGTGTGGCTCAAGGTGCCGACGGACTTCTGC
CACTACATCTCGATAGCGTCTCACTACGGATTCCAGTTTCACCACACGCA
GCCCAAGTACGTGATGATGTACCTGTGGCTACCCGAGGACGTGCCCGACA
AGGTTCCGGCGTTCGGGACACACCACCTCGGCGTTGCAGCGGTGTGGCTC
AAGGTGCCGACGGACTTCTGCCACTACATCTCGATAGCGTCTCACTACGG
ATTCCAGTTTCACCACACGCAGCCCAAGTACGTGATGATGTACCTGTGGC
TACCCGAGGACGTGCCCGACAAGGTTCCGGCGTTCGGGACACACCACCTC
GGCGTTGCAGGCTGCGTGATGAACGACAAGAATGAGGTCCTTCTGGTGAG
GGACAGGCACGAGGGCGCCATGTGGAAGTTCCCTGGGGGGCTAGCGGATC
TCGGGGAAGGCATCGGCGAAGCGGCGGTCCGCGAGGTCTGGGAGGAAACC
GGCGTCGAGACCGAGTTTCGCTCGGTGCTGAGCATGAGGCACCAGCACGA
GGCTGCGTGATGAACGACAAGAATGAGGTCCTTCTGGTGAGGGACAGGCA
CGAGGGCGCCATGTGGAAGTTCCCTGGGGGGCTAGCGGATCTCGGGGAAG
GCATCGGCGAAGCGGCGGTCCGCGAGGTCTGGGAGGAAACCGGCGTCGAG
ACCGAGTTTCGCTCGGTGCTGAGCATGAGGCACCAGCACGAGGTGCAGTT
CGGCAACTCGGACTTGTACTTCATCTGCCGGCTGATGCCCAAGGGGACGG
GCGCGGGGGCGCTCGACATCACCAAGTGCAACCACGAAATCGCGGACGCG
TGCTGGATGCCGTTGGAGCAGTTTAAGAAGCAAACCCGGCATTCGATGCT
GGCTATAGTGGCGGACATGCTCGAAAAGCCCGAGGACAGGGAGCTCACCA
GGTGCAGTTCGGCAACTCGGACTTGTACTTCATCTGCCGGCTGATGCCCA
AGGGGACGGGCGCGGGGGCGCTCGACATCACCAAGTGCAACCACGAAATC
GCGGACGCGTGCTGGATGCCGTTGGAGCAGTTTAAGAAGCAAACCCGGCA
TTCGATGCTGGCTATAGTGGCGGACATGCTCGAAAAGCCCGAGGACAGGG
AGCTCACCAGGAGTCTGCACGAGTCCGTGATTCCCAACCGAGCGCCTTAC
TTCCTGTACCACCGCAACGCATCTTCCCCACCATAAGAGTCTGCACGAGT
CCGTGATTCCCAACCGAGCGCCTTACTTCCTGTACCACCGCAACGCATCT
TCCCCACCATAA
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