mRNA_S-firma_F_contig10345.493.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI) HSP 1 Score: 227 bits (579), Expect = 2.100e-64 Identity = 145/257 (56.42%), Postives = 167/257 (64.98%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRARPSARRVWKNGPGDQSDVEQNHLWQLFARHTTMTLIILYLVYTQVSTVVFQAFACEDFDEIGK 771
F+E+TKVPFPPVYEKFL IIGIFSFDLGW+ISAACLTAGIDFYDKLLIVTIGPVGLLL+LGFTFYLGARPVR GR + ++ T+ ++ + ++ +G + GS+ A G+ XXXXXXXXXXX + RARPSARRVW+NGPGD+SD+EQNHLW+LFARHTTM LIILYLVYTQVSTVVFQAFACEDF EIGK
Sbjct: 973 FAEVTKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGIDFYDKLLIVTIGPVGLLLLLGFTFYLGARPVRTGRVIDMSFRNNTSTSVSSATAATLAAYDSG--------------------------------ISGSVRPRA---------GASDSARGTASTTAXXXXXXXXXXXXXXXXXXXXXXXQGRARPSARRVWRNGPGDESDIEQNHLWELFARHTTMMLIILYLVYTQVSTVVFQAFACEDFPEIGK 1188
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 225 bits (573), Expect = 1.430e-63 Identity = 162/257 (63.04%), Postives = 183/257 (71.21%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRARPSARRVWKNGPGDQSDVEQNHLWQLFARHTTMTLIILYLVYTQVSTVVFQAFACEDFDEIGK 771
F+EITKVPFPPVYEKFL IIGIFSFDLGW+ISAACLTAG+DFYDKLLIVTIGPVGLLL+LGFTFYLGARPVRKGR + S ++ + ++ ++ + +G XXXXXXXXXXXXX +RG XXXXXXXXXXXXXXXX R+ RARPSARRVW+NGPGD+SD+EQNHLW+LFARHTTM LIILYLVY+QVSTVVFQAFACEDF EIGK
Sbjct: 1432 FAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGVDFYDKLLIVTIGPVGLLLLLGFTFYLGARPVRKGRIVDMSSRSTASDSVSSATVATLEAYDSGSSRSVRPQXXXXXXXXXXXXX-------ARG---------------------------TXXXXXXXXXXXXXXXXXXXXXXXXXRARQGRARPSARRVWRNGPGDESDIEQNHLWELFARHTTMMLIILYLVYSQVSTVVFQAFACEDFPEIGK 1654
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE) HSP 1 Score: 166 bits (419), Expect = 3.130e-43 Identity = 115/257 (44.75%), Postives = 130/257 (50.58%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRARPSARRVWKNGPGDQSDVEQNHLWQLFARHTTMTLIILYLVYTQVSTVVFQAFACEDFDEIGK 771
F+EITKVPFPPVYEKFL IIG FSF LGW+ISAACLTAG DFYDKLL+ + L + G + R +D R GT STT +R G G S A E R+ RARPSARRVW++GPGD+SD+EQNHLW+LFARHTTM LIILYLVY+QVSTVVFQAFACEDF EIGK
Sbjct: 214 FAEITKVPFPPVYEKFLSIIGTFSFGLGWVISAACLTAGNDFYDKLLVSSATAATLA-----AYDSGISGSVRTRAGASDPAR--GTTSTTAT--------------------------------------TRRGKGPSRTAXXXXXX-------------------------------------XERARQGRARPSARRVWRSGPGDESDIEQNHLWELFARHTTMMLIILYLVYSQVSTVVFQAFACEDFPEIGK 388
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 166 bits (420), Expect = 4.430e-43 Identity = 109/257 (42.41%), Postives = 119/257 (46.30%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRARPSARRVWKNGPGDQSDVEQNHLWQLFARHTTMTLIILYLVYTQVSTVVFQAFACEDFDEIGK 771
F+EITKVPFPPVYEKFL IIGIFSFDLGW+ISAACLTAGIDFYDKLL R G + T A + + E R+ RARPSARRVW+NGPGD+SD+EQNHLW+LFARHTTM LIILYLVYTQVSTVVFQAFACEDF EIGK
Sbjct: 1322 FAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGIDFYDKLL-----------------------------------RGKGASRTAMA----------------------------------------------------------------------------------------AAAAAERARQGRARPSARRVWRNGPGDESDLEQNHLWELFARHTTMMLIILYLVYTQVSTVVFQAFACEDFPEIGK 1455
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE) HSP 1 Score: 152 bits (385), Expect = 2.100e-38 Identity = 103/258 (39.92%), Postives = 126/258 (48.84%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRAR-PSARRVWKNGPGDQSDVEQNHLWQLFARHTTMTLIILYLVYTQVSTVVFQAFACEDFDEIGK 771
F++ITK PFPP+YEKFL IIGIFSFDLGW++SAACLT GIDFYDKLLIVTIGP+ L LG TF++G+RP ++ ++ +A +A GG G G + +GS + AR PS R + GD+ + EQ LW LFARHTTM LI+LYLVYTQ+STVVFQ FACE EIGK
Sbjct: 1277 FADITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLLIVTIGPLVPLCFLGITFFVGSRPAKET----------------------------------------------------------------NMSPNATTADGGASGSGGRELEEGRVQGAC-----------SGSTTSVTANSGAAAREPSVRSALRAKSGDRKNPEQERLWGLFARHTTMMLIVLYLVYTQISTVVFQTFACEHLPEIGK 1459
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI) HSP 1 Score: 152 bits (384), Expect = 2.340e-38 Identity = 117/215 (54.42%), Postives = 129/215 (60.00%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRARPSARRVWKNGPGDQSDVEQN 645
F+EITKVPFPPVYEKFL IIGIFSFDLGW++SAACLTAGIDFYDKLLIVTIGPVGLLL+LGFTFYLGARPVRKGR + TRA S S S GS+ HA +A XXXXXXXXXXXXXXXX R+ RARPSARRVW+NGPGD+SD+EQ+
Sbjct: 705 FAEITKVPFPPVYEKFLSIIGIFSFDLGWMMSAACLTAGIDFYDKLLIVTIGPVGLLLLLGFTFYLGARPVRKGRVI------------DTRARSNASSS-------------------------------------GSVSPHAPAAS--------DSARGTXXXXXXXXXXXXXXXXXXXXXXXXXRARQGRARPSARRVWRNGPGDESDLEQS 862
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI) HSP 1 Score: 147 bits (370), Expect = 2.090e-36 Identity = 103/255 (40.39%), Postives = 124/255 (48.63%), Query Frame = 1
Query: 7 EITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRARPSARRVWKNGPGDQSDVEQNHLWQLFARHTTMTLIILYLVYTQVSTVVFQAFACEDFDEIGK 771
+ITK PFPP+YEKFL IIGIFSFDLGW++SAACLT GIDFYDKLL+VTIGP+ L LG TF++G+RP +K + +TT S SR G G V G+ S + GG R S R + + G Q + EQ LW LFARHTT+ LI+LYLVYTQ+STVVFQ F+CED EIGK
Sbjct: 1046 DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLLMVTIGPLLPLCFLGITFFVGSRPAKKTNM----------SPNTTAGGGATSGSRVGEV--------------------------EEGRVQGASSRSMASVM----------------------------------AIGGATARA----QSVRNLLRAKSGQQKNPEQERLWGLFARHTTIMLIVLYLVYTQISTVVFQTFSCEDLPEIGK 1226
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.780e-29 Identity = 93/241 (38.59%), Postives = 113/241 (46.89%), Query Frame = 1
Query: 7 EITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKGRFLLADSMRSSGTASTTRALSFMSRSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGVGGSLFAHAFSAIGGGGGGSGXDXXXXXXXXXXXXXXXXXXXXSTGSLSGGEEERRPRAR-PSARRVWKNGPGDQSDVEQNHLWQLFARHTTMTLIILYLVYTQVSTV 726
+ITK PFPP+YEKFL IIGIFSFDLGW++SAACLT GIDFYDKLLIVTIGP+ L LG TF++G+RP ++ +M + TA R G V G+ S+GS + R AR PS R + GD + EQ LW LFARHTT+ LI+LYLVYTQ+STV
Sbjct: 1086 DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLLIVTIGPLVPLFFLGITFFVGSRPAKE------TNMSPNATAGGXXXXXXXXRE------------------------------LEEGRVQGA---------------------------------------SSGSTTSVTSNRGAAARGPSVRSALRAKSGDPKNPEQQRLWGLFARHTTIMLIVLYLVYTQISTV 1251
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.410e-9 Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKG 222
F IT V FPP Y +FL I + SFDLG ++SA+C+ +DFY LL+ T+GP+G+ +VL T+++ R G
Sbjct: 1124 FPSITAVDFPPAYARFLSWIDMLSFDLGHVLSASCVFPVMDFYQSLLLTTLGPLGVAMVLVLTYWIAKRRAGAG 1197
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 4.790e-9 Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 1 FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTIGPVGLLLVLGFTFYLGARPVRKG 222
F+ + V +P VY++FL +G+F+FDL W++SA C+ +DF+D+LLI TIGP+ LL L +T Y A + +G
Sbjct: 1740 FTAVANVTYPDVYQRFLDGLGVFNFDLSWVLSAGCIVV-VDFHDRLLISTIGPIVALLFLCWT-YAAATRINRG 1811 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10345.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10345.493.1 >prot_S-firma_F_contig10345.493.1 ID=prot_S-firma_F_contig10345.493.1|Name=mRNA_S-firma_F_contig10345.493.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=257bp FSEITKVPFPPVYEKFLGIIGIFSFDLGWLISAACLTAGIDFYDKLLIVTback to top mRNA from alignment at S-firma_F_contig10345:2295..4760+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10345.493.1 ID=mRNA_S-firma_F_contig10345.493.1|Name=mRNA_S-firma_F_contig10345.493.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2466bp|location=Sequence derived from alignment at S-firma_F_contig10345:2295..4760+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10345:2295..4760+ >mRNA_S-firma_F_contig10345.493.1 ID=mRNA_S-firma_F_contig10345.493.1|Name=mRNA_S-firma_F_contig10345.493.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1542bp|location=Sequence derived from alignment at S-firma_F_contig10345:2295..4760+ (Sphaerotrichia firma ET2_F female)back to top |