mRNA_S-firma_F_contig10344.490.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10344.490.1
Unique NamemRNA_S-firma_F_contig10344.490.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A448ZKK9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKK9_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.060e-67
Identity = 128/265 (48.30%), Postives = 169/265 (63.77%), Query Frame = 1
Query:  235 DRLKESDSRNELSATYVKAPDAEDGVVE----PKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKA-VDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            +R  + D R ++  T     D  D          +G++ R +VTAEV +SKIF AGFGWQ  S IAE Q  FAPD+L FALTTG GD +GV  GH ++ T +KA VD SI++ +++QTG+LLGSAAFCSG+ WQP+V+    ++L F    A    GCG+AF +GLRAGR + S +M  IEEPTY N KAD +LS  +G A   FVGTD ++   QN+L ++VGI D    + G  IAG STALGF   Q++ N++ P GK W D
Sbjct:   42 NRRNDKDERRQIHTTRPCNADVADASPTVSSTESSGIIDRFVVTAEVTVSKIFPAGFGWQTSSIIAENQFGFAPDTLNFALTTGAGDAIGVLGGHCLYYTAKKALVDSSINMKSEFQTGVLLGSAAFCSGTAWQPLVDALQGANLSFGGVFAGTWVGCGMAFYAGLRAGRTILSGYMSHIEEPTYENSKADASLSCVIGGATGFFVGTDAAYLPNQNFLINIVGIPDGTPDLVGCGIAGSSTALGFLTSQSVFNVIYPTGKCWND 306          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S2YG15_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YG15_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.030e-66
Identity = 127/263 (48.29%), Postives = 161/263 (61.22%), Query Frame = 1
Query:  244 KESDSRNELSATYVKAPDAEDGV------VEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV-DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            +E   R EL +T  +  DA  G       V   + M+ R  VTAEV +SKIF AGFGWQ  S +A+   +  D+L FALTTGLGD +GV  GH  +   +K + D SID+  +  TG+LLGSAAFCSG VWQP+VN+   ++L FN   A    GCG+AF  GLR GR + S  +  IEEPTY N K D++LS ++G A A FVGTD ++  AQNWL   VGI D    + G AIAG ST++GF   Q+  N V PAGK W D
Sbjct:   40 EEKKERRELHSTSRRPADATAGTTAAVPEVATTSSMMDRFTVTAEVTVSKIFPAGFGWQTASVVADGLGYEADTLNFALTTGLGDAIGVLGGHCAYYAAKKTMYDSSIDMTKELHTGILLGSAAFCSGGVWQPLVNILQGANLPFNQVFAGTWVGCGMAFYLGLRVGRTILSGPLEHIEEPTYDNQKNDVSLSTAIGGATAFFVGTDAAYLPAQNWLIGAVGIQDGTPDLVGSAIAGTSTSMGFVAAQSTLNAVYPAGKCWND 302          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S4LM27_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LM27_9EUGL)

HSP 1 Score: 219 bits (558), Expect = 5.850e-66
Identity = 127/292 (43.49%), Postives = 168/292 (57.53%), Query Frame = 1
Query:  127 FDAIDVNGDGVIDRGEFIELINQYENHELNNLAFAVDRLKESDSRNELSATYVKAPDAEDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAVDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTSSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSFEAQNWLADVVGIGDV-STVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            F A+DVN DG I R +F                 A++ LK+ + +  LS   V     E      K  +++RTL TAEV +SKIF AGFGWQ  SA+A         + F + TG GD LGV +GH+++   +  +   +D+  +   G+ LG+AAF SG  WQPI N  +  GF T +   G GCG  F  GLR  RA+Y+  + GI    + NLK D+ LSL+VG A   FVGTD+SF A+N+LA +VGI +  STV   AIAG STALGF  +Q +QN VVPAGKNW+D
Sbjct:   40 FHALDVNKDGTICRDDFHA---------------ALEHLKDDELKPFLS--NVTGAVKESTQASTKGALITRTLTTAEVTVSKIFPAGFGWQTASAVAATAGLEGTEVGFFVMTGAGDMLGVGLGHSLYYYAKSLLGYKVDMEKEVNNGIFLGTAAFFSGFAWQPIFNFLTLHGFQTTMVGTGMGCGFMFFVGLRFARAIYAGRLRGIWHSNHANLKDDVGLSLAVGGATGMFVGTDVSFGAENYLAPIVGIPETASTVGSAAIAGSSTALGFVGVQAVQNTVVPAGKNWLD 314          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S4AJ81_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJ81_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.620e-65
Identity = 123/245 (50.20%), Postives = 163/245 (66.53%), Query Frame = 1
Query:  283 VKAPDAEDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKA-VDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            +KAP A        + +V R +VTAEV +SKIF AGFGWQ  S IAE Q  FAPD++ FALTTG+GD +GV  GH ++ + +KA VD SI++ +++Q G+LLGSAAFCSG+ WQP+V+    ++L F    A    GCG+AF +GLRAGR + S FM  IEEPTY N KAD +LS  +G A   FVGTD ++   QN+L ++VGI D    + G  IAG STALGF   Q++ N++ P+ K W D
Sbjct:   97 IKAPTAPAVESSETSSIVDRFVVTAEVTVSKIFPAGFGWQTSSIIAENQFGFAPDTINFALTTGVGDAIGVIGGHCLYYSAKKAFVDKSINMDSEFQNGVLLGSAAFCSGTAWQPLVDALQGANLSFGGVFAGTWVGCGMAFYAGLRAGRTILSGFMAHIEEPTYENSKADSSLSCVIGGATGFFVGTDAAYLPNQNFLINIVGISDGTPDLVGCGIAGSSTALGFFTSQSVFNVIYPSKKCWND 341          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A448ZS93_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS93_9STRA)

HSP 1 Score: 211 bits (538), Expect = 5.030e-63
Identity = 129/275 (46.91%), Postives = 168/275 (61.09%), Query Frame = 1
Query:  244 KESDSRNELSATYVKAPDA----------------EDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            K+S+ R   S    K+PD                  DGV    + + SR L TAEV +SKIF AGFGWQ  S IAE    FAPD++ FALTTGLGD LGV  GH ++   +KA+  + SI++ ++ QTGLLLGSAAFCSG+ WQP+V+    ++  F    A   AGCG+AF +GLRAGR + S FM  IEEPTY N K D +LS  +G A   FVGTD ++   QN+L + VGI D    + G AIAG ST++GF   Q++ N++ P+GK W D
Sbjct:   39 KKSERREVHSTAGTKSPDVTAAELKTSNSTKVAALNDGV----STVASRFLTTAEVTVSKIFPAGFGWQTSSIIAENNFGFAPDTMNFALTTGLGDALGVVGGHCLYYGAKKAITKNDSINMESEVQTGLLLGSAAFCSGTAWQPLVDALQGANCSFGGVFAGTWAGCGLAFYAGLRAGRTILSGFMTHIEEPTYDNSKNDASLSCVIGGATGFFVGTDAAYLPDQNFLINFVGITDGTPDLVGCAIAGTSTSMGFFTSQSVFNVIYPSGKCWND 309          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A1Z5JPF6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPF6_FISSO)

HSP 1 Score: 213 bits (542), Expect = 5.280e-63
Identity = 121/257 (47.08%), Postives = 160/257 (62.26%), Query Frame = 1
Query:  256 SRNELSATYVKAPDAEDG---VVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            SR ++ ++  KA    D    V   ++ +V R +VTAEV +SKIF AGFGWQ  S +A  Q FA DSL FAL+TGLGD +GV +GH  + + +KA+     ++L  +  TG+LLGSAAFCSG+ WQPIVN    ++L F         GCG+AF  GLR  R + S  + GIEEPTY N K D +LS+++G A   FVGTD ++   QN+L DVVGI D    + G AIAG ST+LGF   Q+  N++ P GK W D
Sbjct:  103 SRRQVHSSVPKASQVIDSAAPVTMTRSSLVDRFIVTAEVTVSKIFPAGFGWQTASIVAAQQGFAGDSLNFALSTGLGDAIGVCLGHMTYYSIKKALVKGSGLNLTQELHTGILLGSAAFCSGTAWQPIVNALQGANLPFQQVFLGTWIGCGVAFYGGLRVARTLLSGALEGIEEPTYANSKNDASLSVAIGGATGFFVGTDAAYLPEQNFLLDVVGIQDGTPDLVGCAIAGTSTSLGFMAAQSSLNVIYPTGKCWND 359          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A6U5G8G9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5G8G9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.560e-60
Identity = 116/236 (49.15%), Postives = 147/236 (62.29%), Query Frame = 1
Query:  307 GVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV-DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTSS--LGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGDVS-TVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            G ++ +  + +R   TAEV +SKIF AGFGWQ  S +A+  +   D+L FALTTG GD LGV VGH  +   +K + D +I++V Q Q G LL SAA CSG+VWQPIVN+     L FN        GCG AF +GLRAGR   S   Y IEEPTY N K D +LS+++G A   FVGTD ++   QN+L  +VGI D +  + G  IAG STALGF   Q+  N+  PAGK WVD
Sbjct:   59 GKLKEETNLSTRFNRTAEVIVSKIFPAGFGWQSASVVADKMSMEADTLGFALTTGFGDALGVFVGHTAYFAAKKRLSDSNINMVQQAQVGFLLSSAAMCSGTVWQPIVNVLQGIDLSFNAVFMGTWFGCGTAFYAGLRAGRTFLSSLEY-IEEPTYKNSKDDASLSVAIGGATGFFVGTDAAYLPDQNFLLSIVGIADETPALLGSTIAGTSTALGFATTQSFFNVAYPAGKCWVD 293          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: B7G6Y2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6Y2_PHATC)

HSP 1 Score: 201 bits (511), Expect = 4.390e-59
Identity = 118/263 (44.87%), Postives = 158/263 (60.08%), Query Frame = 1
Query:  259 RNELSATYVKAPDAEDGVV---------EPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAE-AQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            R EL +T  +  D  D  V           ++ +  R +VT E  +SKIF AGFGWQ  S IAE +  ++PD++ FALTTG GD +GV +GH  +   +K++    SID+  ++Q G+LLGSAAFCSG+ WQP+VN    ++L FN       AGCG+AF  GLRA R + S  M  IE PT+ N + DM LS+++G A   FVGTD ++   QN+L  VVGI D    + G AIAG STALGF   Q+  N+  P GK+W D
Sbjct:   39 RRELHSTVQRKADVADQSVGTTMATASSTTRSSLTDRFIVTVEATVSKIFPAGFGWQTSSIIAENSLGYSPDTMSFALTTGFGDAVGVLLGHVGYYGLKKSILAADSIDMTEEFQKGVLLGSAAFCSGTAWQPLVNAFQGANLPFNQVFLGTWAGCGLAFYVGLRAARTVMSGPMQYIEAPTFANSQTDMGLSVAIGGATGFFVGTDAAYLPDQNFLKGVVGIADGTPDLVGCAIAGSSTALGFMTAQSAMNLAYPKGKSWND 301          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: K0SS50_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS50_THAOC)

HSP 1 Score: 195 bits (495), Expect = 6.620e-57
Identity = 114/240 (47.50%), Postives = 149/240 (62.08%), Query Frame = 1
Query:  301 EDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTS--SLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGDVS-TVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            E+      +G+ +R  VTAEV +SKIF AGFGWQ  S +AE    ++ DS+ FALTTGLGD +GV VGH+ +   +KA+  D SID+  + QTGLLL SAAFCSG+ WQP+V++    +L F    A    GCG AF  GLR  R + S     I  PT+ N   D +LS+++G A   FVGTD ++  +QN+L +VVGI D +  + G AIAG ST+LGF   QT  N   PAGK W D
Sbjct:   45 EEAAAPTPSGIANRLKVTAEVTVSKIFPAGFGWQSSSILAEDYLGYSADSVAFALTTGLGDAVGVFVGHSAFYAAKKAITSDESIDMNREAQTGLLLASAAFCSGTAWQPLVDMLQGMNLPFLQVFAGTWVGCGTAFYLGLRGAREILSGPFKHIHAPTFENSITDRSLSVAIGGATGFFVGTDAAYLPSQNFLINVVGIHDTTPALAGCAIAGASTSLGFLSTQTALNAAYPAGKLWND 284          
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S1I886_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I886_9EUGL)

HSP 1 Score: 195 bits (496), Expect = 2.830e-56
Identity = 112/267 (41.95%), Postives = 151/267 (56.55%), Query Frame = 1
Query:  232 VDRLKESDSRNELSATYVKAPDAEDGVVEPKAG--MVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAVDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTSSLGFNTCLAMVGA--GCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSFEAQ------NWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
            +D L++  SRNELS T     + +D   +   G  +V+R   T EV +SKIF AGFGWQ  S  A A       + F L TG+GD LGV +GH  W  G++ +   +D+  +  T  LL +A   SG+ WQP+VNL     F    A  G   GCG+AF  GLR GR  +S  + G+  P+Y NLKAD  LS++VG A  AFVGTD+ F         N L  +VG+ + V  + G  +AG STA+GFT +Q+ QN+ +  GKNWVD
Sbjct:   86 LDFLRKGISRNELSDTA----ETDDAPADTSLGSRLVNRFSKTCEVCVSKIFPAGFGWQASSLAAGAAGLEATDVAFFLCTGVGDALGVGIGHMAWHAGKRGLGYDVDITTESHTATLLMTACMFSGTAWQPLVNLLHMANFTFAPAAAGTMMGCGLAFFVGLRFGRIFWSPRLRGVAAPSYANLKADAQLSMAVGGATGAFVGTDVGFVDPTTGVDTNVLRPIVGVEETVGDLHGCVLAGTSTAIGFTAVQSAQNVALAPGKNWVD 348          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A448ZKK9_9STRA2.060e-6748.30Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2YG15_9STRA1.030e-6648.29Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4LM27_9EUGL5.850e-6643.49Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4AJ81_9STRA3.620e-6550.20Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZS93_9STRA5.030e-6346.91Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5JPF6_FISSO5.280e-6347.08Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6U5G8G9_9STRA1.560e-6049.15Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B7G6Y2_PHATC4.390e-5944.87Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0SS50_THAOC6.620e-5747.50Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1I886_9EUGL2.830e-5641.95Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10344contigS-firma_F_contig10344:1859..3450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2850.Phatr48383
Max annot lvl2836|Bacillariophyta
Evalue6.77e-60
EggNOG OGs2C2M6@1|root,2S417@2759|Eukaryota,2XE8U@2836|Bacillariophyta
Hectar predicted targeting categorymitochondrion
Exons4
Model size1002
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10344.490.1prot_S-firma_F_contig10344.490.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10344 1865..3450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.947653-UTR-S-firma_F_contig10344:1858..18641622815565.947653-UTR-S-firma_F_contig10344:1858..1864Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10344 1859..1864 +
1696949420.3400342-UTR-S-firma_F_contig10344:1858..18641696949420.3400342-UTR-S-firma_F_contig10344:1858..1864Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10344 1859..1864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.9583445-CDS-S-firma_F_contig10344:1864..20041622815565.9583445-CDS-S-firma_F_contig10344:1864..2004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 1865..2004 +
1696949420.3556178-CDS-S-firma_F_contig10344:1864..20041696949420.3556178-CDS-S-firma_F_contig10344:1864..2004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 1865..2004 +
1622815565.9694457-CDS-S-firma_F_contig10344:2085..21821622815565.9694457-CDS-S-firma_F_contig10344:2085..2182Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 2086..2182 +
1696949420.3657002-CDS-S-firma_F_contig10344:2085..21821696949420.3657002-CDS-S-firma_F_contig10344:2085..2182Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 2086..2182 +
1622815565.9837298-CDS-S-firma_F_contig10344:2626..31481622815565.9837298-CDS-S-firma_F_contig10344:2626..3148Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 2627..3148 +
1696949420.3751352-CDS-S-firma_F_contig10344:2626..31481696949420.3751352-CDS-S-firma_F_contig10344:2626..3148Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 2627..3148 +
1622815565.9950967-CDS-S-firma_F_contig10344:3213..34501622815565.9950967-CDS-S-firma_F_contig10344:3213..3450Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 3214..3450 +
1696949420.384107-CDS-S-firma_F_contig10344:3213..34501696949420.384107-CDS-S-firma_F_contig10344:3213..3450Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10344 3214..3450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10344.490.1

>prot_S-firma_F_contig10344.490.1 ID=prot_S-firma_F_contig10344.490.1|Name=mRNA_S-firma_F_contig10344.490.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=332bp
MLSRAIPAVAPALRWTTAAFRASTTVADPAGLSHDRVMEMFDAIDVNGDG
VIDRGEFIELINQYENHELNNLAFAVDRLKESDSRNELSATYVKAPDAED
GVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLF
ALTTGLGDCLGVAVGHAIWMTGRKAVDPSIDLVAQYQTGLLLGSAAFCSG
SVWQPIVNLTSSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEE
PTYGNLKADMALSLSVGAACAAFVGTDLSFEAQNWLADVVGIGDVSTVTG
MAIAGCSTALGFTVIQTLQNIVVPAGKNWVD*
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mRNA from alignment at S-firma_F_contig10344:1859..3450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10344.490.1 ID=mRNA_S-firma_F_contig10344.490.1|Name=mRNA_S-firma_F_contig10344.490.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1592bp|location=Sequence derived from alignment at S-firma_F_contig10344:1859..3450+ (Sphaerotrichia firma ET2_F female)
CACAGCATGCTGTCCCGAGCCATCCCAGCCGTCGCCCCAGCCCTCCGGTG GACAACCGCCGCCTTCAGGGCGTCCACAACCGTCGCGGACCCCGCAGGCC TCTCACACGACCGTGTCATGGAGATGTTTGACGCCATCGATGTGAAGTGA GTGTGTGTGGGTGGCGCCTGTCCCTGTGACGCACTTGAACCTCACGGCGG ACCTCCCTCTGCTCTGTATTTTTGCAGCGGCGACGGTGTGATTGACCGTG GGGAGTTCATTGAGCTCATCAACCAGTATGAGAACCACGAGCTGAACAAC CTTGCCTTTGCAGTGGACAGGCTGGTGCGTCACCCCCTCTTTCTTTCCTA TTGGGTGTGGTCTTGGTTGTGTGTGTGTGTGTGTGTGTGGCAGTGTGGCA GTGTGTATGTGTGTGCGTGTGTGTGTGTTCCGAAGTTTGTGTGTGTGAGA GGCAGTGGCAGGGTGTGTGTGTGTGTTGTCTAGCAGTGTGCAGCTCGGCA TTGTGTGTTCCGAACGCTGCGCGCGCGCGCGCGCGCGTGTGTGTTTGTGT GTGAGGGCCCTGTCCTTGTCTGTGTGTGTGTGTCCGTGTCTTTGTCCGTG TCCTCTGTGTCCCCCGTGAGTTCAGCGGCCTGAGTGTGTGTGTCCGTGTC CGTGCCTTAGTTGTGTCCCCCGTGTTTGTGTGTATGACTGTGTGTGAGTG TATAACTGTGTTCAGAGGGGTGTGTTTCCACTTTGCTTTTCTTCACCTGC CTGTTCAACCATCCGCAGAAGGAATCCGACTCCCGGAACGAGCTGTCGGC GACGTACGTCAAGGCGCCCGACGCGGAGGACGGCGTGGTTGAGCCGAAGG CGGGCATGGTGTCTCGCACGCTGGTGACGGCGGAGGTAGCGATTTCCAAG ATTTTCATGGCGGGCTTTGGGTGGCAGGGCTTCTCCGCCATTGCCGAGGC GCAGAACTTTGCCCCGGACTCTCTCCTCTTTGCCCTCACCACTGGCCTGG GCGACTGCCTGGGCGTTGCCGTCGGGCACGCCATCTGGATGACTGGCCGC AAGGCTGTAGACCCCTCCATTGACCTCGTCGCCCAGTACCAGACGGGCCT CCTCCTCGGCTCCGCCGCCTTCTGCAGCGGCAGCGTGTGGCAGCCCATCG TGAACCTCACCTCCTCCCTGGGCTTCAACACCTGCCTGGCCATGGTCGGC GCTGGCTGCGGCATTGCCTTCCTCTCCGGCCTCCGCGCCGGGCGGGCCAT GTACTCCGACTTCATGTACGGCATTGAGGAGCCCACTTACGTGCGTTTGT TGCCACGCAACACACATGCACACAGCCCTTTGTCTCACACCACCACCACC CACAGGGCAACCTCAAGGCAGACATGGCGCTGTCCCTGTCGGTGGGCGCC GCCTGCGCGGCCTTTGTCGGCACCGACCTCAGCTTTGAGGCCCAGAACTG GCTGGCGGACGTGGTGGGCATTGGCGACGTCAGCACCGTGACTGGCATGG CCATCGCCGGCTGCTCCACCGCCCTTGGCTTCACCGTCATCCAGACCCTG CAGAACATTGTGGTGCCCGCCGGCAAGAACTGGGTGGACTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10344:1859..3450+

>mRNA_S-firma_F_contig10344.490.1 ID=mRNA_S-firma_F_contig10344.490.1|Name=mRNA_S-firma_F_contig10344.490.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1992bp|location=Sequence derived from alignment at S-firma_F_contig10344:1859..3450+ (Sphaerotrichia firma ET2_F female)
ATGCTGTCCCGAGCCATCCCAGCCGTCGCCCCAGCCCTCCGGTGGACAAC
CGCCGCCTTCAGGGCGTCCACAACCGTCGCGGACCCCGCAGGCCTCTCAC
ACGACCGTGTCATGGAGATGTTTGACGCCATCGATGTGAAATGCTGTCCC
GAGCCATCCCAGCCGTCGCCCCAGCCCTCCGGTGGACAACCGCCGCCTTC
AGGGCGTCCACAACCGTCGCGGACCCCGCAGGCCTCTCACACGACCGTGT
CATGGAGATGTTTGACGCCATCGATGTGAACGGCGACGGTGTGATTGACC
GTGGGGAGTTCATTGAGCTCATCAACCAGTATGAGAACCACGAGCTGAAC
AACCTTGCCTTTGCAGTGGACAGGCTGCGGCGACGGTGTGATTGACCGTG
GGGAGTTCATTGAGCTCATCAACCAGTATGAGAACCACGAGCTGAACAAC
CTTGCCTTTGCAGTGGACAGGCTGAAGGAATCCGACTCCCGGAACGAGCT
GTCGGCGACGTACGTCAAGGCGCCCGACGCGGAGGACGGCGTGGTTGAGC
CGAAGGCGGGCATGGTGTCTCGCACGCTGGTGACGGCGGAGGTAGCGATT
TCCAAGATTTTCATGGCGGGCTTTGGGTGGCAGGGCTTCTCCGCCATTGC
CGAGGCGCAGAACTTTGCCCCGGACTCTCTCCTCTTTGCCCTCACCACTG
GCCTGGGCGACTGCCTGGGCGTTGCCGTCGGGCACGCCATCTGGATGACT
GGCCGCAAGGCTGTAGACCCCTCCATTGACCTCGTCGCCCAGTACCAGAC
GGGCCTCCTCCTCGGCTCCGCCGCCTTCTGCAGCGGCAGCGTGTGGCAGC
CCATCGTGAACCTCACCTCCTCCCTGGGCTTCAACACCTGCCTGGCCATG
GTCGGCGCTGGCTGCGGCATTGCCTTCCTCTCCGGCCTCCGCGCCGGGCG
GGCCATGTACTCCGACTTCATGTACGGCATTGAGGAGCCCACTTACAAGG
AATCCGACTCCCGGAACGAGCTGTCGGCGACGTACGTCAAGGCGCCCGAC
GCGGAGGACGGCGTGGTTGAGCCGAAGGCGGGCATGGTGTCTCGCACGCT
GGTGACGGCGGAGGTAGCGATTTCCAAGATTTTCATGGCGGGCTTTGGGT
GGCAGGGCTTCTCCGCCATTGCCGAGGCGCAGAACTTTGCCCCGGACTCT
CTCCTCTTTGCCCTCACCACTGGCCTGGGCGACTGCCTGGGCGTTGCCGT
CGGGCACGCCATCTGGATGACTGGCCGCAAGGCTGTAGACCCCTCCATTG
ACCTCGTCGCCCAGTACCAGACGGGCCTCCTCCTCGGCTCCGCCGCCTTC
TGCAGCGGCAGCGTGTGGCAGCCCATCGTGAACCTCACCTCCTCCCTGGG
CTTCAACACCTGCCTGGCCATGGTCGGCGCTGGCTGCGGCATTGCCTTCC
TCTCCGGCCTCCGCGCCGGGCGGGCCATGTACTCCGACTTCATGTACGGC
ATTGAGGAGCCCACTTACGGCAACCTCAAGGCAGACATGGCGCTGTCCCT
GTCGGTGGGCGCCGCCTGCGCGGCCTTTGTCGGCACCGACCTCAGCTTTG
AGGCCCAGAACTGGCTGGCGGACGTGGTGGGCATTGGCGACGTCAGCACC
GTGACTGGCATGGCCATCGCCGGCTGCTCCACCGCCCTTGGCTTCACCGT
CATCCAGACCCTGCAGAACATTGTGGTGCCCGCCGGCAAGAACTGGGTGG
ACTAAGGCAACCTCAAGGCAGACATGGCGCTGTCCCTGTCGGTGGGCGCC
GCCTGCGCGGCCTTTGTCGGCACCGACCTCAGCTTTGAGGCCCAGAACTG
GCTGGCGGACGTGGTGGGCATTGGCGACGTCAGCACCGTGACTGGCATGG
CCATCGCCGGCTGCTCCACCGCCCTTGGCTTCACCGTCATCCAGACCCTG
CAGAACATTGTGGTGCCCGCCGGCAAGAACTGGGTGGACTAA
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