mRNA_S-firma_F_contig10344.490.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A448ZKK9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKK9_9STRA) HSP 1 Score: 223 bits (567), Expect = 2.060e-67 Identity = 128/265 (48.30%), Postives = 169/265 (63.77%), Query Frame = 1
Query: 235 DRLKESDSRNELSATYVKAPDAEDGVVE----PKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKA-VDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
+R + D R ++ T D D +G++ R +VTAEV +SKIF AGFGWQ S IAE Q FAPD+L FALTTG GD +GV GH ++ T +KA VD SI++ +++QTG+LLGSAAFCSG+ WQP+V+ ++L F A GCG+AF +GLRAGR + S +M IEEPTY N KAD +LS +G A FVGTD ++ QN+L ++VGI D + G IAG STALGF Q++ N++ P GK W D
Sbjct: 42 NRRNDKDERRQIHTTRPCNADVADASPTVSSTESSGIIDRFVVTAEVTVSKIFPAGFGWQTSSIIAENQFGFAPDTLNFALTTGAGDAIGVLGGHCLYYTAKKALVDSSINMKSEFQTGVLLGSAAFCSGTAWQPLVDALQGANLSFGGVFAGTWVGCGMAFYAGLRAGRTILSGYMSHIEEPTYENSKADASLSCVIGGATGFFVGTDAAYLPNQNFLINIVGIPDGTPDLVGCGIAGSSTALGFLTSQSVFNVIYPTGKCWND 306
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S2YG15_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YG15_9STRA) HSP 1 Score: 221 bits (562), Expect = 1.030e-66 Identity = 127/263 (48.29%), Postives = 161/263 (61.22%), Query Frame = 1
Query: 244 KESDSRNELSATYVKAPDAEDGV------VEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV-DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
+E R EL +T + DA G V + M+ R VTAEV +SKIF AGFGWQ S +A+ + D+L FALTTGLGD +GV GH + +K + D SID+ + TG+LLGSAAFCSG VWQP+VN+ ++L FN A GCG+AF GLR GR + S + IEEPTY N K D++LS ++G A A FVGTD ++ AQNWL VGI D + G AIAG ST++GF Q+ N V PAGK W D
Sbjct: 40 EEKKERRELHSTSRRPADATAGTTAAVPEVATTSSMMDRFTVTAEVTVSKIFPAGFGWQTASVVADGLGYEADTLNFALTTGLGDAIGVLGGHCAYYAAKKTMYDSSIDMTKELHTGILLGSAAFCSGGVWQPLVNILQGANLPFNQVFAGTWVGCGMAFYLGLRVGRTILSGPLEHIEEPTYDNQKNDVSLSTAIGGATAFFVGTDAAYLPAQNWLIGAVGIQDGTPDLVGSAIAGTSTSMGFVAAQSTLNAVYPAGKCWND 302
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S4LM27_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LM27_9EUGL) HSP 1 Score: 219 bits (558), Expect = 5.850e-66 Identity = 127/292 (43.49%), Postives = 168/292 (57.53%), Query Frame = 1
Query: 127 FDAIDVNGDGVIDRGEFIELINQYENHELNNLAFAVDRLKESDSRNELSATYVKAPDAEDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAVDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTSSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSFEAQNWLADVVGIGDV-STVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
F A+DVN DG I R +F A++ LK+ + + LS V E K +++RTL TAEV +SKIF AGFGWQ SA+A + F + TG GD LGV +GH+++ + + +D+ + G+ LG+AAF SG WQPI N + GF T + G GCG F GLR RA+Y+ + GI + NLK D+ LSL+VG A FVGTD+SF A+N+LA +VGI + STV AIAG STALGF +Q +QN VVPAGKNW+D
Sbjct: 40 FHALDVNKDGTICRDDFHA---------------ALEHLKDDELKPFLS--NVTGAVKESTQASTKGALITRTLTTAEVTVSKIFPAGFGWQTASAVAATAGLEGTEVGFFVMTGAGDMLGVGLGHSLYYYAKSLLGYKVDMEKEVNNGIFLGTAAFFSGFAWQPIFNFLTLHGFQTTMVGTGMGCGFMFFVGLRFARAIYAGRLRGIWHSNHANLKDDVGLSLAVGGATGMFVGTDVSFGAENYLAPIVGIPETASTVGSAAIAGSSTALGFVGVQAVQNTVVPAGKNWLD 314
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S4AJ81_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJ81_9STRA) HSP 1 Score: 218 bits (555), Expect = 3.620e-65 Identity = 123/245 (50.20%), Postives = 163/245 (66.53%), Query Frame = 1
Query: 283 VKAPDAEDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKA-VDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
+KAP A + +V R +VTAEV +SKIF AGFGWQ S IAE Q FAPD++ FALTTG+GD +GV GH ++ + +KA VD SI++ +++Q G+LLGSAAFCSG+ WQP+V+ ++L F A GCG+AF +GLRAGR + S FM IEEPTY N KAD +LS +G A FVGTD ++ QN+L ++VGI D + G IAG STALGF Q++ N++ P+ K W D
Sbjct: 97 IKAPTAPAVESSETSSIVDRFVVTAEVTVSKIFPAGFGWQTSSIIAENQFGFAPDTINFALTTGVGDAIGVIGGHCLYYSAKKAFVDKSINMDSEFQNGVLLGSAAFCSGTAWQPLVDALQGANLSFGGVFAGTWVGCGMAFYAGLRAGRTILSGFMAHIEEPTYENSKADSSLSCVIGGATGFFVGTDAAYLPNQNFLINIVGISDGTPDLVGCGIAGSSTALGFFTSQSVFNVIYPSKKCWND 341
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A448ZS93_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS93_9STRA) HSP 1 Score: 211 bits (538), Expect = 5.030e-63 Identity = 129/275 (46.91%), Postives = 168/275 (61.09%), Query Frame = 1
Query: 244 KESDSRNELSATYVKAPDA----------------EDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
K+S+ R S K+PD DGV + + SR L TAEV +SKIF AGFGWQ S IAE FAPD++ FALTTGLGD LGV GH ++ +KA+ + SI++ ++ QTGLLLGSAAFCSG+ WQP+V+ ++ F A AGCG+AF +GLRAGR + S FM IEEPTY N K D +LS +G A FVGTD ++ QN+L + VGI D + G AIAG ST++GF Q++ N++ P+GK W D
Sbjct: 39 KKSERREVHSTAGTKSPDVTAAELKTSNSTKVAALNDGV----STVASRFLTTAEVTVSKIFPAGFGWQTSSIIAENNFGFAPDTMNFALTTGLGDALGVVGGHCLYYGAKKAITKNDSINMESEVQTGLLLGSAAFCSGTAWQPLVDALQGANCSFGGVFAGTWAGCGLAFYAGLRAGRTILSGFMTHIEEPTYDNSKNDASLSCVIGGATGFFVGTDAAYLPDQNFLINFVGITDGTPDLVGCAIAGTSTSMGFFTSQSVFNVIYPSGKCWND 309
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A1Z5JPF6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPF6_FISSO) HSP 1 Score: 213 bits (542), Expect = 5.280e-63 Identity = 121/257 (47.08%), Postives = 160/257 (62.26%), Query Frame = 1
Query: 256 SRNELSATYVKAPDAEDG---VVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
SR ++ ++ KA D V ++ +V R +VTAEV +SKIF AGFGWQ S +A Q FA DSL FAL+TGLGD +GV +GH + + +KA+ ++L + TG+LLGSAAFCSG+ WQPIVN ++L F GCG+AF GLR R + S + GIEEPTY N K D +LS+++G A FVGTD ++ QN+L DVVGI D + G AIAG ST+LGF Q+ N++ P GK W D
Sbjct: 103 SRRQVHSSVPKASQVIDSAAPVTMTRSSLVDRFIVTAEVTVSKIFPAGFGWQTASIVAAQQGFAGDSLNFALSTGLGDAIGVCLGHMTYYSIKKALVKGSGLNLTQELHTGILLGSAAFCSGTAWQPIVNALQGANLPFQQVFLGTWIGCGVAFYGGLRVARTLLSGALEGIEEPTYANSKNDASLSVAIGGATGFFVGTDAAYLPEQNFLLDVVGIQDGTPDLVGCAIAGTSTSLGFMAAQSSLNVIYPTGKCWND 359
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A6U5G8G9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5G8G9_9STRA) HSP 1 Score: 204 bits (520), Expect = 1.560e-60 Identity = 116/236 (49.15%), Postives = 147/236 (62.29%), Query Frame = 1
Query: 307 GVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV-DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTSS--LGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGDVS-TVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
G ++ + + +R TAEV +SKIF AGFGWQ S +A+ + D+L FALTTG GD LGV VGH + +K + D +I++V Q Q G LL SAA CSG+VWQPIVN+ L FN GCG AF +GLRAGR S Y IEEPTY N K D +LS+++G A FVGTD ++ QN+L +VGI D + + G IAG STALGF Q+ N+ PAGK WVD
Sbjct: 59 GKLKEETNLSTRFNRTAEVIVSKIFPAGFGWQSASVVADKMSMEADTLGFALTTGFGDALGVFVGHTAYFAAKKRLSDSNINMVQQAQVGFLLSSAAMCSGTVWQPIVNVLQGIDLSFNAVFMGTWFGCGTAFYAGLRAGRTFLSSLEY-IEEPTYKNSKDDASLSVAIGGATGFFVGTDAAYLPDQNFLLSIVGIADETPALLGSTIAGTSTALGFATTQSFFNVAYPAGKCWVD 293
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: B7G6Y2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6Y2_PHATC) HSP 1 Score: 201 bits (511), Expect = 4.390e-59 Identity = 118/263 (44.87%), Postives = 158/263 (60.08%), Query Frame = 1
Query: 259 RNELSATYVKAPDAEDGVV---------EPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAE-AQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLT--SSLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
R EL +T + D D V ++ + R +VT E +SKIF AGFGWQ S IAE + ++PD++ FALTTG GD +GV +GH + +K++ SID+ ++Q G+LLGSAAFCSG+ WQP+VN ++L FN AGCG+AF GLRA R + S M IE PT+ N + DM LS+++G A FVGTD ++ QN+L VVGI D + G AIAG STALGF Q+ N+ P GK+W D
Sbjct: 39 RRELHSTVQRKADVADQSVGTTMATASSTTRSSLTDRFIVTVEATVSKIFPAGFGWQTSSIIAENSLGYSPDTMSFALTTGFGDAVGVLLGHVGYYGLKKSILAADSIDMTEEFQKGVLLGSAAFCSGTAWQPLVNAFQGANLPFNQVFLGTWAGCGLAFYVGLRAARTVMSGPMQYIEAPTFANSQTDMGLSVAIGGATGFFVGTDAAYLPDQNFLKGVVGIADGTPDLVGCAIAGSSTALGFMTAQSAMNLAYPKGKSWND 301
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: K0SS50_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS50_THAOC) HSP 1 Score: 195 bits (495), Expect = 6.620e-57 Identity = 114/240 (47.50%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 301 EDGVVEPKAGMVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQ-NFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAV--DPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTS--SLGFNTCLAMVGAGCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSF-EAQNWLADVVGIGDVS-TVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
E+ +G+ +R VTAEV +SKIF AGFGWQ S +AE ++ DS+ FALTTGLGD +GV VGH+ + +KA+ D SID+ + QTGLLL SAAFCSG+ WQP+V++ +L F A GCG AF GLR R + S I PT+ N D +LS+++G A FVGTD ++ +QN+L +VVGI D + + G AIAG ST+LGF QT N PAGK W D
Sbjct: 45 EEAAAPTPSGIANRLKVTAEVTVSKIFPAGFGWQSSSILAEDYLGYSADSVAFALTTGLGDAVGVFVGHSAFYAAKKAITSDESIDMNREAQTGLLLASAAFCSGTAWQPLVDMLQGMNLPFLQVFAGTWVGCGTAFYLGLRGAREILSGPFKHIHAPTFENSITDRSLSVAIGGATGFFVGTDAAYLPSQNFLINVVGIHDTTPALAGCAIAGASTSLGFLSTQTALNAAYPAGKLWND 284
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Match: A0A7S1I886_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I886_9EUGL) HSP 1 Score: 195 bits (496), Expect = 2.830e-56 Identity = 112/267 (41.95%), Postives = 151/267 (56.55%), Query Frame = 1
Query: 232 VDRLKESDSRNELSATYVKAPDAEDGVVEPKAG--MVSRTLVTAEVAISKIFMAGFGWQGFSAIAEAQNFAPDSLLFALTTGLGDCLGVAVGHAIWMTGRKAVDPSIDLVAQYQTGLLLGSAAFCSGSVWQPIVNLTSSLGFNTCLAMVGA--GCGIAFLSGLRAGRAMYSDFMYGIEEPTYGNLKADMALSLSVGAACAAFVGTDLSFEAQ------NWLADVVGIGD-VSTVTGMAIAGCSTALGFTVIQTLQNIVVPAGKNWVD 999
+D L++ SRNELS T + +D + G +V+R T EV +SKIF AGFGWQ S A A + F L TG+GD LGV +GH W G++ + +D+ + T LL +A SG+ WQP+VNL F A G GCG+AF GLR GR +S + G+ P+Y NLKAD LS++VG A AFVGTD+ F N L +VG+ + V + G +AG STA+GFT +Q+ QN+ + GKNWVD
Sbjct: 86 LDFLRKGISRNELSDTA----ETDDAPADTSLGSRLVNRFSKTCEVCVSKIFPAGFGWQASSLAAGAAGLEATDVAFFLCTGVGDALGVGIGHMAWHAGKRGLGYDVDITTESHTATLLMTACMFSGTAWQPLVNLLHMANFTFAPAAAGTMMGCGLAFFVGLRFGRIFWSPRLRGVAAPSYANLKADAQLSMAVGGATGAFVGTDVGFVDPTTGVDTNVLRPIVGVEETVGDLHGCVLAGTSTAIGFTAVQSAQNVALAPGKNWVD 348 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10344.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10344.490.1 >prot_S-firma_F_contig10344.490.1 ID=prot_S-firma_F_contig10344.490.1|Name=mRNA_S-firma_F_contig10344.490.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=332bp MLSRAIPAVAPALRWTTAAFRASTTVADPAGLSHDRVMEMFDAIDVNGDGback to top mRNA from alignment at S-firma_F_contig10344:1859..3450+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10344.490.1 ID=mRNA_S-firma_F_contig10344.490.1|Name=mRNA_S-firma_F_contig10344.490.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1592bp|location=Sequence derived from alignment at S-firma_F_contig10344:1859..3450+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10344:1859..3450+ >mRNA_S-firma_F_contig10344.490.1 ID=mRNA_S-firma_F_contig10344.490.1|Name=mRNA_S-firma_F_contig10344.490.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1992bp|location=Sequence derived from alignment at S-firma_F_contig10344:1859..3450+ (Sphaerotrichia firma ET2_F female)back to top |