mRNA_S-firma_F_contig1033.473.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1033.473.1
Unique NamemRNA_S-firma_F_contig1033.473.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1033.473.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.470e-35
Identity = 105/136 (77.21%), Postives = 109/136 (80.15%), Query Frame = 3 
Query:    3 PKPTFTRVIPKFLQQYETMLTGPKPR--PDGEEVFSGGGNFTDGGXXXXXX--GMPGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYDEEEVAALEAYMKTHPTKEEDKKALRKRATELSASIGSGQ 398
            PKP FTRVIPKFLQQYETMLTGPKP+  PD EE FSGGG+FTDGGXXX     GMPGR XXXXXX          XXXXXXXXXXXXXXX    DYDEEEVAALEAYMKTHP+KEEDK+ALRKRA ELS SIGSGQ
Sbjct:   11 PKPAFTRVIPKFLQQYETMLTGPKPQQGPDNEETFSGGGDFTDGGXXXSSGKSGMPGRGXXXXXXSKQGAAEGRGXXXXXXXXXXXXXXXGAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSVSIGSGQ 146
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BLAST of mRNA_S-firma_F_contig1033.473.1 vs. uniprot
Match: D7FMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.060e-30
Identity = 107/139 (76.98%), Postives = 113/139 (81.29%), Query Frame = 3 
Query:  273 DYDEEEVAALEAYMKTHPTKEEDKKALRKRATELSASIGSGQGPNAKGGSEAEDSAAGAXXXXXXX--------EEPIEYTDASGRLKFNKRPAAGASGTGTGKSXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG 665
            DYDEEEVAALEAYMKTHP+KEEDK+ALRKRA ELSASIGSGQG  AKGG  A  +    XXXXXXX        EEPIEYTDASG+LKFNKRP + A+G G    XXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG
Sbjct:   41 DYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXEEPIEYTDASGKLKFNKRPVSAAAG-GXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1033.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEF2_9PHAE2.470e-3577.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMH3_ECTSI2.060e-3076.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1033contigS-firma_F_contig1033:535..2845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1349
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1033.473.1prot_S-firma_F_contig1033.473.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1033 1216..2789 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.3176894-UTR-S-firma_F_contig1033:534..12151622815564.3176894-UTR-S-firma_F_contig1033:534..1215Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1033 535..1215 -
1696949419.0870135-UTR-S-firma_F_contig1033:534..12151696949419.0870135-UTR-S-firma_F_contig1033:534..1215Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1033 535..1215 -
1622815564.374268-UTR-S-firma_F_contig1033:2789..28451622815564.374268-UTR-S-firma_F_contig1033:2789..2845Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1033 2790..2845 -
1696949419.1426196-UTR-S-firma_F_contig1033:2789..28451696949419.1426196-UTR-S-firma_F_contig1033:2789..2845Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1033 2790..2845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.3354127-CDS-S-firma_F_contig1033:1215..14851622815564.3354127-CDS-S-firma_F_contig1033:1215..1485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 1216..1485 -
1696949419.1013849-CDS-S-firma_F_contig1033:1215..14851696949419.1013849-CDS-S-firma_F_contig1033:1215..1485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 1216..1485 -
1622815564.347209-CDS-S-firma_F_contig1033:1778..20971622815564.347209-CDS-S-firma_F_contig1033:1778..2097Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 1779..2097 -
1696949419.1133988-CDS-S-firma_F_contig1033:1778..20971696949419.1133988-CDS-S-firma_F_contig1033:1778..2097Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 1779..2097 -
1622815564.3612761-CDS-S-firma_F_contig1033:2766..27891622815564.3612761-CDS-S-firma_F_contig1033:2766..2789Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 2767..2789 -
1696949419.129225-CDS-S-firma_F_contig1033:2766..27891696949419.129225-CDS-S-firma_F_contig1033:2766..2789Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 2767..2789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1033.473.1

>prot_S-firma_F_contig1033.473.1 ID=prot_S-firma_F_contig1033.473.1|Name=mRNA_S-firma_F_contig1033.473.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=204bp
MLTGPKPRPDGEEVFSGGGNFTDGGGGGSSSGMPGRSRGRDRDSGSQGGG
GGAEAAAVAASRGGGGGGDGFGDYDEEEVAALEAYMKTHPTKEEDKKALR
KRATELSASIGSGQGPNAKGGSEAEDSAAGATKPPPPPEEPIEYTDASGR
LKFNKRPAAGASGTGTGKSGDEGSKGSKKKAKRAKLAKLSNAKLLSFGDD
EDG*
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mRNA from alignment at S-firma_F_contig1033:535..2845-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1033.473.1 ID=mRNA_S-firma_F_contig1033.473.1|Name=mRNA_S-firma_F_contig1033.473.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2311bp|location=Sequence derived from alignment at S-firma_F_contig1033:535..2845- (Sphaerotrichia firma ET2_F female)
GGCCGAAGCCTACCTTTACGCGGGTGATCCCCAAATTTCTGCAGCAGTAT
GAGACCATGCTCACAGGACCGAAGCCACGGTGCGCAACAACAATGCAGAG
ATGCGGCGGTGATTCAGCAGCAGAAAGGAGCGAGAGGGGGCAAAGAGGGT
TAGAATGTTAGAAAAGGTGCTTCTGGTGCCGACTTTCCGATCAATTTTCA
AACAGTGGGTTAGAATGTTAGAATAAGGTGCTTCTGGTGCCGACTTTTCC
GATCAATTTTCAAACAAGTCTTCTCTGGGCCAAATGCACACTGTCGTAGT
TGCCTGGAGAAGCTCTGCCGCGACTCGAAGGTTAATTAACCGTGGTCGCG
CAGCGCGTACGTGATCAGTGCTCCCTGTGGTCGAACTCCCGTTGGCATAT
GATATTGCCAGGCTCCCAAAGGGCTGTGTACCATACAGCCCACGAGAATA
CGCCCGCACGTAGAGGGAGTTGTCCCCAAATATTCCGGTAGTGGAGAGAC
TGCTTGCCCAGGTTAGACAGCTTCGTGGGCATGGCGGTAAACAGCACAAC
TCCAGTAGAAGCAGAGGACGACAAGAAGTTGTAGCACAACCACGTCGTTT
GAGCTATGGTTGTGATTGGATTCCGACGCTCCTCGCCCCTGTGGCCTAAA
CCGCAGCACACACTACTACTGGCTGTTTCGCTGTTTCGCTTACGCCCTGA
GCCCTTACACTCACGACGGTACCGCTGTTCTCTCCAATGGCGACTTAGGC
CGGATGGCGAGGAAGTGTTCAGCGGGGGGGGGAATTTCACCGACGGAGGG
GGGGGTGGCAGCAGCAGCGGCATGCCTGGCAGGAGCAGGGGTCGAGATAG
AGACTCTGGCAGCCAAGGCGGGGGCGGTGGCGCTGAGGCGGCAGCCGTGG
CGGCGAGCCGTGGTGGCGGCGGCGGTGGCGACGGATTCGGAGACTACGAC
GAGGAAGAGGTGGCCGCCTTGGAAGCGTACATGAAGACGCACCCCACTAA
GGAGGAAGACAAGAAAGCGTTGCGAAAACGGGCCACAGAGCTTTCGGCGA
GCATTGGTTCCGGCCAGGTGAGCTCCTCGGCATTACACCCTATCCTAAAC
CTAAAGGTGCCTTCATTCACAATCAAACCCGTAGGAGACGCCTAGGTGCC
AGTTGGAACCTTTCGGAGGGGATTGTTGAGGAGGCGCTACGAAAGCCCGT
CGATAGCGTTGGTGCGAAACACGCCCCTTGAACGGCTACAACAATATGTA
GTACATACAAATTGTCCGCAATCCGTACAGTTTTCTGGTTTCTCTGGCTT
CTCTGATCTTTGCATCACCCGGATATCGCTGCGCGACCTGGTGAACTCGC
GAACAACCAGGGGCCCAACGCCAAAGGCGGCAGTGAGGCCGAGGATTCCG
CGGCCGGCGCGACCAAGCCACCACCCCCACCCGAAGAGCCCATCGAGTAC
ACAGACGCTTCGGGCAGGTTAAAATTCAACAAGAGGCCCGCTGCTGGGGC
GTCGGGGACGGGGACGGGTAAAAGTGGAGACGAGGGGAGCAAGGGCTCTA
AGAAGAAGGCCAAGCGGGCCAAGCTGGCCAAGCTGAGCAACGCCAAGTTG
CTGTCCTTTGGAGATGACGAGGATGGATAGCTATGTGGAGGAATGTACGA
CATAGTTCGAGTACACAAATACGTTCTGACGGAATTGTTTTTGGTGGGTA
GCGGCTTGTTAGACAACTGCTGCTTGCTGCCATCGCGTTGGCTGCACGTG
GCACGCGGATAAGTTGAAGGTGCCGTATCCTCGGAGCTAGGCGCTGGCCA
CTTCCCTAGGGTGTGTGCTACATTTCGAAAAGCTCAAACCCGGGGCGACG
ACCGCAACCATTTTTTTTTTTAACTAGTTTAGGATACAATTGGCCTTCTT
CCACAGGGACACGACCTGCTAGGCCGGGCACGGCAGCAACTGTTTTGAAA
CTCTAGTTAGTGGATCTCGTGGGATACCACGCCTCATGCCCGATCTCAGT
ACCGCAGCGGCAGCGGCTGAGCCGGTAGCATGAAATTGAATACTCCGACG
CCAAACCCTCAATGCTACTGTAACCTGTATTCCCCCGGGGGAGTCCTTTG
TTTGAAGCCTTTCAGGCCGAATTTCGTTCGTGCAGTCAAGCCTCCAAGTG
GACTAATAATGGAAAGTACCCGCACCGTGAGCGATGGGCACGCGTGCGTG
TTCGACGTCCTCGCGGGCGGACATTTGCTAGAAGAAAGAGTGGTCTGACG
GGGGGGAGTGAGAGCGTGCTTCTGCGGACAGGGTTCTTGGGGATGGCCCT
GCCACGGGTCA
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Coding sequence (CDS) from alignment at S-firma_F_contig1033:535..2845-

>mRNA_S-firma_F_contig1033.473.1 ID=mRNA_S-firma_F_contig1033.473.1|Name=mRNA_S-firma_F_contig1033.473.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1224bp|location=Sequence derived from alignment at S-firma_F_contig1033:535..2845- (Sphaerotrichia firma ET2_F female)
ATGCTCACAGGACCGAAGCCACGATGCTCACAGGACCGAAGCCACGGCCG
GATGGCGAGGAAGTGTTCAGCGGGGGGGGGAATTTCACCGACGGAGGGGG
GGGTGGCAGCAGCAGCGGCATGCCTGGCAGGAGCAGGGGTCGAGATAGAG
ACTCTGGCAGCCAAGGCGGGGGCGGTGGCGCTGAGGCGGCAGCCGTGGCG
GCGAGCCGTGGTGGCGGCGGCGGTGGCGACGGATTCGGAGACTACGACGA
GGAAGAGGTGGCCGCCTTGGAAGCGTACATGAAGACGCACCCCACTAAGG
AGGAAGACAAGAAAGCGTTGCGAAAACGGGCCACAGAGCTTTCGGCGAGC
ATTGGTTCCGGCCAGGCCGGATGGCGAGGAAGTGTTCAGCGGGGGGGGGA
ATTTCACCGACGGAGGGGGGGGTGGCAGCAGCAGCGGCATGCCTGGCAGG
AGCAGGGGTCGAGATAGAGACTCTGGCAGCCAAGGCGGGGGCGGTGGCGC
TGAGGCGGCAGCCGTGGCGGCGAGCCGTGGTGGCGGCGGCGGTGGCGACG
GATTCGGAGACTACGACGAGGAAGAGGTGGCCGCCTTGGAAGCGTACATG
AAGACGCACCCCACTAAGGAGGAAGACAAGAAAGCGTTGCGAAAACGGGC
CACAGAGCTTTCGGCGAGCATTGGTTCCGGCCAGGGGCCCAACGCCAAAG
GCGGCAGTGAGGCCGAGGATTCCGCGGCCGGCGCGACCAAGCCACCACCC
CCACCCGAAGAGCCCATCGAGTACACAGACGCTTCGGGCAGGTTAAAATT
CAACAAGAGGCCCGCTGCTGGGGCGTCGGGGACGGGGACGGGTAAAAGTG
GAGACGAGGGGAGCAAGGGCTCTAAGAAGAAGGCCAAGCGGGCCAAGCTG
GCCAAGCTGAGCAACGCCAAGTTGCTGTCCTTTGGAGATGACGAGGATGG
ATAGGGGCCCAACGCCAAAGGCGGCAGTGAGGCCGAGGATTCCGCGGCCG
GCGCGACCAAGCCACCACCCCCACCCGAAGAGCCCATCGAGTACACAGAC
GCTTCGGGCAGGTTAAAATTCAACAAGAGGCCCGCTGCTGGGGCGTCGGG
GACGGGGACGGGTAAAAGTGGAGACGAGGGGAGCAAGGGCTCTAAGAAGA
AGGCCAAGCGGGCCAAGCTGGCCAAGCTGAGCAACGCCAAGTTGCTGTCC
TTTGGAGATGACGAGGATGGATAG
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