mRNA_S-firma_F_contig10313.464.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10313.464.1
Unique NamemRNA_S-firma_F_contig10313.464.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: D0NY28_PHYIT (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NY28_PHYIT)

HSP 1 Score: 239 bits (611), Expect = 6.420e-75
Identity = 116/251 (46.22%), Postives = 165/251 (65.74%), Query Frame = 1
Query:    1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            +V++TV++ G + +L++G+ +V  +A+H+ KLR ++        D +  AP D     C  ++CLLLRY+ + GGG  AA+++ CFD+L   F  ++ECFASP NCR+  FCSAF DTD AFGSVGSFFD   + G FEANPPF+P++++ M   M  LL  A G ++F+VI+PAW+  +GW+ LN S+F    L++PQ  HGY EG QQ R T +RI++ DTSVF+ QN     KWPVT+     L  AF
Sbjct:   71 KVQVTVMEDGMR-QLTYGRSTVKLSANHFTKLREMFAKKQGLGGDGSNMAPKDQQQLECA-LFCLLLRYESLDGGGFQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQETEGWQQLNASRFNQRHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEKKLEGLKQAF 319          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: G4YF15_PHYSP (PCIF1_WW domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4YF15_PHYSP)

HSP 1 Score: 237 bits (604), Expect = 2.020e-73
Identity = 116/252 (46.03%), Postives = 162/252 (64.29%), Query Frame = 1
Query:    1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYDI--GGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            RV +   + G + +L++G  +V  +A+H+ KLR +Y        D ++ AP D    F   ++CLLLRYD   GGG   AA+++ CFD+L   F  ++ECFASP NCR+  FCSAF DTD AFGSVGSFFD   + G FEANPPF+P++++ M   M  LL  A G ++F+VI+PAW+  +GW+ LN+S++    L++PQ  HGY EG QQ R T +RI++ DTSVF+ QN     KWPVT+    +L  AF
Sbjct:  105 RVHVAAAEDGMR-QLTYGNSTVKLSAAHFAKLREMYARKQGLGGDGSSMAPKDQ-RSFESALFCLLLRYDSLDGGGFQQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDCAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQDTEGWQQLNSSRYNQTHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEKKLDSLKSAF 354          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A329T4D0_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T4D0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.890e-72
Identity = 113/250 (45.20%), Postives = 162/250 (64.80%), Query Frame = 1
Query:    1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTH-------DFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            +V++ V++ G + +L++G  +V  +A H+ KLR ++       DD ++        F   ++CLLLRYD + GGG  AA+++ CFD+L   F  ++ECFASP NCR+  FCSAF DTD AFGSVGSFFD   + G FEANPPF+P++++ M   M  LL  A G ++F+VI+PAW+  +GW+ LN S+F    L++PQ  HGY EG QQ R T +RI++ DTS+F+ QN     KWPVT+    +L  AF
Sbjct:  203 KVQVAVMEDGMR-QLTYGHSTVKLSADHFAKLREMFARKQGLGDDGSNMAPKDQRQFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQETEGWQQLNASRFNQRHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSLFFWQNSKACNKWPVTEKKLESLKQAF 451          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A3M6VL48_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL48_9STRA)

HSP 1 Score: 236 bits (601), Expect = 4.760e-72
Identity = 114/251 (45.42%), Postives = 161/251 (64.14%), Query Frame = 1
Query:    1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            +V++ V++   +  L++GK  V  +A+H+ KLR LY        D ++ AP D    F   ++CLLLRYD + GGG  AA+++ CFD+L   F  ++ECFASP NCR+  FCSAF DTD  FGSVGSFFD   + G FEANPPF+P++++ M   M  LL  A G ++F++I+P W+  +GW+ LN S+F    L++PQ  HGY EG QQ R T +RI++ DTSVF+ QN     +WPVT+    +L  AF
Sbjct:  183 KVQVAVMEDDTR-HLTYGKSMVKLSAAHFAKLRELYARKRGLDDDGSSMAPKDQ-RQFESALFCLLLRYDSLSGGGFQAALNEECFDVLLKEFNCKMECFASPLNCRYSRFCSAFLDTDFVFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLTAADGPLAFIIIIPTWQKTEGWQQLNASRFNQRHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNAMACNEWPVTEKKLESLKHAF 431          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A6A3R028_9STRA (PCIF1_WW domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3R028_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.150e-71
Identity = 111/237 (46.84%), Postives = 153/237 (64.56%), Query Frame = 1
Query:   40 ELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTT-------HDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            +LS+G  +V  +A+H+ KLR +Y        D +         F   ++CLLLRYD + GGG  AA+++ CFD+L   F  ++ECFASP NCR+  FCSAF DTD AFGSVGSFFD   + G FEANPPF+P++++ M   M  LL  A G ++F+VI+PAW+  +GW+ LN S++    L++PQ  HGY EG QQ R T +RI++ DTSVF+ QN     KWPVT++   +L  AF
Sbjct:  206 QLSYGNSTVKLSAAHFAKLREMYARKLGMSGDGSSMTPKHQRSFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKGFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQDTEGWQQLNASRYNQTHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEEKLESLKSAF 442          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A3R7HJ33_9STRA (PCIF1_WW domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HJ33_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.700e-71
Identity = 111/237 (46.84%), Postives = 154/237 (64.98%), Query Frame = 1
Query:   40 ELSHGKHSVAFNASHYEKLRVLY-------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            +L++G   V  +A+H+ KLR +Y          ++      H+F   ++CLLLRYD + GGG  AA+++ CFD+L   F  ++ECFASP N R+  FCSAF DTDAAFGSVGSFFD   + G FEANPPF+P++++ M   M  LL  A G ++F+VI+PAW+  +GW+ LN S++    L +PQ  HGY EG QQ R T +RI++ DTSVF+ QN    +KWPVT+ A  +L  AF
Sbjct:  192 QLTYGNSVVKLSAAHFAKLREMYARKQDFSGNGSSMVPKARHEFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKYFDAKMECFASPLNSRYSRFCSAFLDTDAAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQETEGWQQLNASRYNQIHLRIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNAKACSKWPVTEKALESLKQAF 428          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A484DUF6_BRELC (PCIF1_WW domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUF6_BRELC)

HSP 1 Score: 233 bits (594), Expect = 6.180e-71
Identity = 111/246 (45.12%), Postives = 156/246 (63.41%), Query Frame = 1
Query:   16 VVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            V+   +   L++G   V  +  HY KLR +Y        D ++ AP D  H+F R ++C+LLRYD + GGG  AA+++ CFD+L   F   +ECFASP NCR+  FCSAF DTD  FGSVGSFF    + G FEANPPF+P++++ M   M+ LL  A G ++F++I+P+W+  +GW+ LN+S++    L++PQ  HGY EG QQ R T +RI++ DTSVF+ QN     KWPVT+     L  AF
Sbjct:  193 VISEDSMCHLTYGHVVVKLSVRHYVKLREMYARKQGLICDGSSMAPKDQ-HEFERALFCMLLRYDTLNGGGTQAALYEECFDVLLKEFDCDMECFASPLNCRYSRFCSAFLDTDYVFGSVGSFFHFSPRSGCFEANPPFIPKVIKLMADHMSALLNVADGPLAFIIIIPSWQKTEGWQQLNSSRYNQRHLLIPQKKHGYCEGKQQIRKTRWRIASFDTSVFFWQNPKACIKWPVTEQKLEILKQAF 437          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A6G0WGH7_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGH7_9STRA)

HSP 1 Score: 232 bits (592), Expect = 8.160e-71
Identity = 113/231 (48.92%), Postives = 146/231 (63.20%), Query Frame = 1
Query:   43 LSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATG--AMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            +S+G  S+  N  H +KL  LYD   AA       F   ++C+LLRY+ + GGG  AA+++ CF++L + F  ++ECFASPFNCR+  FCSAF DTD AFGS GSFFD     G FEANPPFVP L+  M   M T L  A     + F++I+PAW   +GW+ L  S+F    L L Q  HGY EG QQ R T YRI++ DTSVF+ QN+A  AKWPVT++A + L  AF
Sbjct:  193 VSYGGTSLRINKLHLDKLETLYDRHHAAAGAKAIQFADMLFCILLRYESLDGGGFQAALNEDCFNVLLEHFDCRMECFASPFNCRYGHFCSAFLDTDMAFGSFGSFFDFTPSSGCFEANPPFVPALISKMAKHMTTCLENAAANAPLCFIIIIPAWEHTEGWQLLEQSRFNQHTLHLSQKNHGYCEGKQQMRPTRYRIASFDTSVFFWQNKAAIAKWPVTEEALSQLRTAF 423          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A485L2N9_9STRA (Aste57867_14883 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2N9_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.500e-70
Identity = 115/251 (45.82%), Postives = 148/251 (58.96%), Query Frame = 1
Query:   10 MTVVQGGAKVE-----------LSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            + +VQGG K             +S+G HS+  N  H +KL+ LYD            F   ++C+LLRY+ + GGG  AA+++ CFD+L   F  ++ECFASPFNCR+  FCSAF DTD  FGS GSFFD     G FEANPPFVP L+  M   M   L  A   ++F++I+PAW   +GW+ L  S F    L++ Q  HGY EG QQ R T YRI++ DTSVF+ QN   A KWPVT+ A   L VAF
Sbjct:  169 LRLVQGGGKKHAVIKPNEDHFLVSYGGHSMRINKGHLDKLQTLYDRHHEEAGAKASQFPDFLFCILLRYESLDGGGFQAALNEECFDVLLTHFDAKMECFASPFNCRYGRFCSAFLDTDMVFGSYGSFFDFRPASGCFEANPPFVPSLIAKMAEHMTDCLTKAAKPLAFIIIIPAWEHTEGWQQLRNSSFNKHYLLISQKHHGYCEGKQQMRPTRYRIASFDTSVFFWQNAMAAKKWPVTEAALEELRVAF 419          
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A6A4A4B0_9STRA (PCIF1_WW domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4A4B0_9STRA)

HSP 1 Score: 235 bits (600), Expect = 3.180e-70
Identity = 111/237 (46.84%), Postives = 153/237 (64.56%), Query Frame = 1
Query:   40 ELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTT-------HDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
            +LS+G  +V  +A+H+ KLR +Y        D +         F   ++CLLLRYD + GGG  AA+++ CFD+L   F  ++ECFASP NCR+  FCSAF DTD AFGSVGSFFD   + G FEANPPF+P++++ M   M  LL  A G ++F+VI+PAW+  +GW+ LN S++    L++PQ  HGY EG QQ R T +RI++ DTSVF+ QN     KWPVT++   +L  AF
Sbjct:  206 QLSYGNSTVKLSAAHFAKLREMYARKLGMSGDGSSMTPKHQRSFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKGFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQDTEGWQQLNASRYNQTHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEEKLESLKSAF 442          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D0NY28_PHYIT6.420e-7546.22PCIF1_WW domain-containing protein n=1 Tax=Phytoph... [more]
G4YF15_PHYSP2.020e-7346.03PCIF1_WW domain-containing protein n=11 Tax=Phytop... [more]
A0A329T4D0_9STRA3.890e-7245.20PCIF1_WW domain-containing protein n=1 Tax=Phytoph... [more]
A0A3M6VL48_9STRA4.760e-7245.42PCIF1_WW domain-containing protein n=1 Tax=Peronos... [more]
A0A6A3R028_9STRA1.150e-7146.84PCIF1_WW domain-containing protein n=4 Tax=Phytoph... [more]
A0A3R7HJ33_9STRA1.700e-7146.84PCIF1_WW domain-containing protein n=3 Tax=Phytoph... [more]
A0A484DUF6_BRELC6.180e-7145.12PCIF1_WW domain-containing protein n=1 Tax=Bremia ... [more]
A0A6G0WGH7_9STRA8.160e-7148.92PCIF1_WW domain-containing protein n=1 Tax=Aphanom... [more]
A0A485L2N9_9STRA1.500e-7045.82Aste57867_14883 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A4A4B0_9STRA3.180e-7046.84PCIF1_WW domain-containing protein n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10313contigS-firma_F_contig10313:1946..2743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog67593.Physo157574
PFAMsPCIF1_WW
Max annot lvl4776|Peronosporales
KEGG koko:K17584
Evalue1.62e-73
EggNOG OGs28P6D@1|root,2QVT7@2759|Eukaryota,3QCMQ@4776|Peronosporales
DescriptionPhosphorylated CTD interacting factor 1 WW domain
COG categoryA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size726
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10313.464.1prot_S-firma_F_contig10313.464.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10313 1955..2743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.2337666-UTR-S-firma_F_contig10313:1945..19541622815563.2337666-UTR-S-firma_F_contig10313:1945..1954Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10313 1946..1954 +
1696949418.1854367-UTR-S-firma_F_contig10313:1945..19541696949418.1854367-UTR-S-firma_F_contig10313:1945..1954Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10313 1946..1954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.2501972-CDS-S-firma_F_contig10313:1954..21191622815563.2501972-CDS-S-firma_F_contig10313:1954..2119Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10313 1955..2119 +
1696949418.2043414-CDS-S-firma_F_contig10313:1954..21191696949418.2043414-CDS-S-firma_F_contig10313:1954..2119Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10313 1955..2119 +
1622815563.2613397-CDS-S-firma_F_contig10313:2191..27431622815563.2613397-CDS-S-firma_F_contig10313:2191..2743Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10313 2192..2743 +
1696949418.21664-CDS-S-firma_F_contig10313:2191..27431696949418.21664-CDS-S-firma_F_contig10313:2191..2743Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10313 2192..2743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10313.464.1

>prot_S-firma_F_contig10313.464.1 ID=prot_S-firma_F_contig10313.464.1|Name=mRNA_S-firma_F_contig10313.464.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=239bp
MTVVQGGAKVELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTHDFCRR
VYCLLLRYDIGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFC
SAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYG
ATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWR
GTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF
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mRNA from alignment at S-firma_F_contig10313:1946..2743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10313.464.1 ID=mRNA_S-firma_F_contig10313.464.1|Name=mRNA_S-firma_F_contig10313.464.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=798bp|location=Sequence derived from alignment at S-firma_F_contig10313:1946..2743+ (Sphaerotrichia firma ET2_F female)
CGCGTCAAGATGACCGTCGTGCAAGGCGGCGCCAAGGTGGAGCTGTCCCA CGGCAAGCACAGCGTGGCGTTTAATGCCTCGCACTACGAGAAGCTGCGGG TGCTGTACGACACGGCCGCGGCCGCCCCTGACGACACCACACACGACTTT TGCCGGCGGGTGTACTGCTTGTTGGTGCGTTGATTCTTTAATGTGTGCGT GTATGTGTTTGGTGTGTTCACCCCCCCCCCCCCCGCCTTCTCTTAGCTCC GGTACGACATTGGCGGCGGTGGCATGCACGCCGCCATCCACGACTCCTGC TTTGACATCCTACGGGACGCATTTGGGGTGCAACTGGAGTGCTTTGCGTC GCCGTTCAACTGCCGGTTCCCCGCGTTTTGCTCCGCATTCCCGGACACGG ACGCGGCGTTTGGGTCCGTGGGCAGCTTTTTTGACTTGGAGGTCAAGGAG GGCTCCTTCGAGGCCAACCCCCCCTTCGTGCCCCGCCTGGTGGAGGCCAT GACTGCCCGCATGAACACCCTCCTGTACGGCGCCACGGGCGCCATGTCCT TTGTGGTCATTGTGCCCGCGTGGCGCCTGAAGGACGGCTGGCGGGCCCTC AACACCAGCAAGTTCAAGACGGACGCCCTCGTCCTGCCGCAAGCTGCCCA CGGCTACACGGAGGGCAGCCAGCAGTGGCGCGGCACTCACTACCGCATCT CCACCTGCGACACAAGCGTGTTCTGGCTGCAAAACGAGGCCGGTGCCGCC AAGTGGCCCGTCACGGACGACGCCAAGGCCGCCCTGACGGTTGCGTTT
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Coding sequence (CDS) from alignment at S-firma_F_contig10313:1946..2743+

>mRNA_S-firma_F_contig10313.464.1 ID=mRNA_S-firma_F_contig10313.464.1|Name=mRNA_S-firma_F_contig10313.464.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1434bp|location=Sequence derived from alignment at S-firma_F_contig10313:1946..2743+ (Sphaerotrichia firma ET2_F female)
ATGACCGTCGTGCAAGGCGGCGCCAAGGTGGAGCTGTCCCACGGCAAGCA
CAGCGTGGCGTTTAATGCCTCGCACTACGAGAAGCTGCGGGTGCTGTACG
ACACGGCCGCGGCCGCCCCTGACGACACCACACACGACTTTTGCCGGCGG
GTGTACTGCTTGTTGATGACCGTCGTGCAAGGCGGCGCCAAGGTGGAGCT
GTCCCACGGCAAGCACAGCGTGGCGTTTAATGCCTCGCACTACGAGAAGC
TGCGGGTGCTGTACGACACGGCCGCGGCCGCCCCTGACGACACCACACAC
GACTTTTGCCGGCGGGTGTACTGCTTGTTGCTCCGGTACGACATTGGCGG
CGGTGGCATGCACGCCGCCATCCACGACTCCTGCTTTGACATCCTACGGG
ACGCATTTGGGGTGCAACTGGAGTGCTTTGCGTCGCCGTTCAACTGCCGG
TTCCCCGCGTTTTGCTCCGCATTCCCGGACACGGACGCGGCGTTTGGGTC
CGTGGGCAGCTTTTTTGACTTGGAGGTCAAGGAGGGCTCCTTCGAGGCCA
ACCCCCCCTTCGTGCCCCGCCTGGTGGAGGCCATGACTGCCCGCATGAAC
ACCCTCCTGTACGGCGCCACGGGCGCCATGTCCTTTGTGGTCATTGTGCC
CGCGTGGCGCCTGAAGGACGGCTGGCGGGCCCTCAACACCAGCAAGTTCA
AGACGGACGCCCTCGTCCTGCCGCAAGCTGCCCACGGCTACACGGAGGGC
AGCCAGCAGTGGCGCGGCACTCACTACCGCATCTCCACCTGCGACACAAG
CGTGTTCTGGCTGCAAAACGAGGCCGGTGCCGCCAAGTGGCCCGTCACGG
ACGACGCCAAGGCCGCCCTGACGGTTGCGTTTCTCCGGTACGACATTGGC
GGCGGTGGCATGCACGCCGCCATCCACGACTCCTGCTTTGACATCCTACG
GGACGCATTTGGGGTGCAACTGGAGTGCTTTGCGTCGCCGTTCAACTGCC
GGTTCCCCGCGTTTTGCTCCGCATTCCCGGACACGGACGCGGCGTTTGGG
TCCGTGGGCAGCTTTTTTGACTTGGAGGTCAAGGAGGGCTCCTTCGAGGC
CAACCCCCCCTTCGTGCCCCGCCTGGTGGAGGCCATGACTGCCCGCATGA
ACACCCTCCTGTACGGCGCCACGGGCGCCATGTCCTTTGTGGTCATTGTG
CCCGCGTGGCGCCTGAAGGACGGCTGGCGGGCCCTCAACACCAGCAAGTT
CAAGACGGACGCCCTCGTCCTGCCGCAAGCTGCCCACGGCTACACGGAGG
GCAGCCAGCAGTGGCGCGGCACTCACTACCGCATCTCCACCTGCGACACA
AGCGTGTTCTGGCTGCAAAACGAGGCCGGTGCCGCCAAGTGGCCCGTCAC
GGACGACGCCAAGGCCGCCCTGACGGTTGCGTTT
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