mRNA_S-firma_F_contig10313.464.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: D0NY28_PHYIT (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NY28_PHYIT) HSP 1 Score: 239 bits (611), Expect = 6.420e-75 Identity = 116/251 (46.22%), Postives = 165/251 (65.74%), Query Frame = 1
Query: 1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+V++TV++ G + +L++G+ +V +A+H+ KLR ++ D + AP D C ++CLLLRY+ + GGG AA+++ CFD+L F ++ECFASP NCR+ FCSAF DTD AFGSVGSFFD + G FEANPPF+P++++ M M LL A G ++F+VI+PAW+ +GW+ LN S+F L++PQ HGY EG QQ R T +RI++ DTSVF+ QN KWPVT+ L AF
Sbjct: 71 KVQVTVMEDGMR-QLTYGRSTVKLSANHFTKLREMFAKKQGLGGDGSNMAPKDQQQLECA-LFCLLLRYESLDGGGFQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQETEGWQQLNASRFNQRHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEKKLEGLKQAF 319
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: G4YF15_PHYSP (PCIF1_WW domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4YF15_PHYSP) HSP 1 Score: 237 bits (604), Expect = 2.020e-73 Identity = 116/252 (46.03%), Postives = 162/252 (64.29%), Query Frame = 1
Query: 1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYDI--GGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
RV + + G + +L++G +V +A+H+ KLR +Y D ++ AP D F ++CLLLRYD GGG AA+++ CFD+L F ++ECFASP NCR+ FCSAF DTD AFGSVGSFFD + G FEANPPF+P++++ M M LL A G ++F+VI+PAW+ +GW+ LN+S++ L++PQ HGY EG QQ R T +RI++ DTSVF+ QN KWPVT+ +L AF
Sbjct: 105 RVHVAAAEDGMR-QLTYGNSTVKLSAAHFAKLREMYARKQGLGGDGSSMAPKDQ-RSFESALFCLLLRYDSLDGGGFQQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDCAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQDTEGWQQLNSSRYNQTHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEKKLDSLKSAF 354
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A329T4D0_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T4D0_9STRA) HSP 1 Score: 236 bits (603), Expect = 3.890e-72 Identity = 113/250 (45.20%), Postives = 162/250 (64.80%), Query Frame = 1
Query: 1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTH-------DFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+V++ V++ G + +L++G +V +A H+ KLR ++ DD ++ F ++CLLLRYD + GGG AA+++ CFD+L F ++ECFASP NCR+ FCSAF DTD AFGSVGSFFD + G FEANPPF+P++++ M M LL A G ++F+VI+PAW+ +GW+ LN S+F L++PQ HGY EG QQ R T +RI++ DTS+F+ QN KWPVT+ +L AF
Sbjct: 203 KVQVAVMEDGMR-QLTYGHSTVKLSADHFAKLREMFARKQGLGDDGSNMAPKDQRQFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKEFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQETEGWQQLNASRFNQRHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSLFFWQNSKACNKWPVTEKKLESLKQAF 451
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A3M6VL48_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL48_9STRA) HSP 1 Score: 236 bits (601), Expect = 4.760e-72 Identity = 114/251 (45.42%), Postives = 161/251 (64.14%), Query Frame = 1
Query: 1 RVKMTVVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+V++ V++ + L++GK V +A+H+ KLR LY D ++ AP D F ++CLLLRYD + GGG AA+++ CFD+L F ++ECFASP NCR+ FCSAF DTD FGSVGSFFD + G FEANPPF+P++++ M M LL A G ++F++I+P W+ +GW+ LN S+F L++PQ HGY EG QQ R T +RI++ DTSVF+ QN +WPVT+ +L AF
Sbjct: 183 KVQVAVMEDDTR-HLTYGKSMVKLSAAHFAKLRELYARKRGLDDDGSSMAPKDQ-RQFESALFCLLLRYDSLSGGGFQAALNEECFDVLLKEFNCKMECFASPLNCRYSRFCSAFLDTDFVFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLTAADGPLAFIIIIPTWQKTEGWQQLNASRFNQRHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNAMACNEWPVTEKKLESLKHAF 431
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A6A3R028_9STRA (PCIF1_WW domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3R028_9STRA) HSP 1 Score: 235 bits (600), Expect = 1.150e-71 Identity = 111/237 (46.84%), Postives = 153/237 (64.56%), Query Frame = 1
Query: 40 ELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTT-------HDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+LS+G +V +A+H+ KLR +Y D + F ++CLLLRYD + GGG AA+++ CFD+L F ++ECFASP NCR+ FCSAF DTD AFGSVGSFFD + G FEANPPF+P++++ M M LL A G ++F+VI+PAW+ +GW+ LN S++ L++PQ HGY EG QQ R T +RI++ DTSVF+ QN KWPVT++ +L AF
Sbjct: 206 QLSYGNSTVKLSAAHFAKLREMYARKLGMSGDGSSMTPKHQRSFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKGFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQDTEGWQQLNASRYNQTHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEEKLESLKSAF 442
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A3R7HJ33_9STRA (PCIF1_WW domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HJ33_9STRA) HSP 1 Score: 234 bits (597), Expect = 1.700e-71 Identity = 111/237 (46.84%), Postives = 154/237 (64.98%), Query Frame = 1
Query: 40 ELSHGKHSVAFNASHYEKLRVLY-------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+L++G V +A+H+ KLR +Y ++ H+F ++CLLLRYD + GGG AA+++ CFD+L F ++ECFASP N R+ FCSAF DTDAAFGSVGSFFD + G FEANPPF+P++++ M M LL A G ++F+VI+PAW+ +GW+ LN S++ L +PQ HGY EG QQ R T +RI++ DTSVF+ QN +KWPVT+ A +L AF
Sbjct: 192 QLTYGNSVVKLSAAHFAKLREMYARKQDFSGNGSSMVPKARHEFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKYFDAKMECFASPLNSRYSRFCSAFLDTDAAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQETEGWQQLNASRYNQIHLRIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNAKACSKWPVTEKALESLKQAF 428
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A484DUF6_BRELC (PCIF1_WW domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUF6_BRELC) HSP 1 Score: 233 bits (594), Expect = 6.180e-71 Identity = 111/246 (45.12%), Postives = 156/246 (63.41%), Query Frame = 1
Query: 16 VVQGGAKVELSHGKHSVAFNASHYEKLRVLY--------DTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
V+ + L++G V + HY KLR +Y D ++ AP D H+F R ++C+LLRYD + GGG AA+++ CFD+L F +ECFASP NCR+ FCSAF DTD FGSVGSFF + G FEANPPF+P++++ M M+ LL A G ++F++I+P+W+ +GW+ LN+S++ L++PQ HGY EG QQ R T +RI++ DTSVF+ QN KWPVT+ L AF
Sbjct: 193 VISEDSMCHLTYGHVVVKLSVRHYVKLREMYARKQGLICDGSSMAPKDQ-HEFERALFCMLLRYDTLNGGGTQAALYEECFDVLLKEFDCDMECFASPLNCRYSRFCSAFLDTDYVFGSVGSFFHFSPRSGCFEANPPFIPKVIKLMADHMSALLNVADGPLAFIIIIPSWQKTEGWQQLNSSRYNQRHLLIPQKKHGYCEGKQQIRKTRWRIASFDTSVFFWQNPKACIKWPVTEQKLEILKQAF 437
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A6G0WGH7_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGH7_9STRA) HSP 1 Score: 232 bits (592), Expect = 8.160e-71 Identity = 113/231 (48.92%), Postives = 146/231 (63.20%), Query Frame = 1
Query: 43 LSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATG--AMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+S+G S+ N H +KL LYD AA F ++C+LLRY+ + GGG AA+++ CF++L + F ++ECFASPFNCR+ FCSAF DTD AFGS GSFFD G FEANPPFVP L+ M M T L A + F++I+PAW +GW+ L S+F L L Q HGY EG QQ R T YRI++ DTSVF+ QN+A AKWPVT++A + L AF
Sbjct: 193 VSYGGTSLRINKLHLDKLETLYDRHHAAAGAKAIQFADMLFCILLRYESLDGGGFQAALNEDCFNVLLEHFDCRMECFASPFNCRYGHFCSAFLDTDMAFGSFGSFFDFTPSSGCFEANPPFVPALISKMAKHMTTCLENAAANAPLCFIIIIPAWEHTEGWQLLEQSRFNQHTLHLSQKNHGYCEGKQQMRPTRYRIASFDTSVFFWQNKAAIAKWPVTEEALSQLRTAF 423
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A485L2N9_9STRA (Aste57867_14883 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2N9_9STRA) HSP 1 Score: 231 bits (590), Expect = 1.500e-70 Identity = 115/251 (45.82%), Postives = 148/251 (58.96%), Query Frame = 1
Query: 10 MTVVQGGAKVE-----------LSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTHDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+ +VQGG K +S+G HS+ N H +KL+ LYD F ++C+LLRY+ + GGG AA+++ CFD+L F ++ECFASPFNCR+ FCSAF DTD FGS GSFFD G FEANPPFVP L+ M M L A ++F++I+PAW +GW+ L S F L++ Q HGY EG QQ R T YRI++ DTSVF+ QN A KWPVT+ A L VAF
Sbjct: 169 LRLVQGGGKKHAVIKPNEDHFLVSYGGHSMRINKGHLDKLQTLYDRHHEEAGAKASQFPDFLFCILLRYESLDGGGFQAALNEECFDVLLTHFDAKMECFASPFNCRYGRFCSAFLDTDMVFGSYGSFFDFRPASGCFEANPPFVPSLIAKMAEHMTDCLTKAAKPLAFIIIIPAWEHTEGWQQLRNSSFNKHYLLISQKHHGYCEGKQQMRPTRYRIASFDTSVFFWQNAMAAKKWPVTEAALEELRVAF 419
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Match: A0A6A4A4B0_9STRA (PCIF1_WW domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4A4B0_9STRA) HSP 1 Score: 235 bits (600), Expect = 3.180e-70 Identity = 111/237 (46.84%), Postives = 153/237 (64.56%), Query Frame = 1
Query: 40 ELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTT-------HDFCRRVYCLLLRYD-IGGGGMHAAIHDSCFDILRDAFGVQLECFASPFNCRFPAFCSAFPDTDAAFGSVGSFFDLEVKEGSFEANPPFVPRLVEAMTARMNTLLYGATGAMSFVVIVPAWRLKDGWRALNTSKFKTDALVLPQAAHGYTEGSQQWRGTHYRISTCDTSVFWLQNEAGAAKWPVTDDAKAALTVAF 726
+LS+G +V +A+H+ KLR +Y D + F ++CLLLRYD + GGG AA+++ CFD+L F ++ECFASP NCR+ FCSAF DTD AFGSVGSFFD + G FEANPPF+P++++ M M LL A G ++F+VI+PAW+ +GW+ LN S++ L++PQ HGY EG QQ R T +RI++ DTSVF+ QN KWPVT++ +L AF
Sbjct: 206 QLSYGNSTVKLSAAHFAKLREMYARKLGMSGDGSSMTPKHQRSFESALFCLLLRYDSLDGGGFQAALNEECFDVLLKGFDCKMECFASPLNCRYSRFCSAFLDTDFAFGSVGSFFDFSPRSGCFEANPPFIPKVIKRMADHMTALLNAADGPLAFIVIIPAWQDTEGWQQLNASRYNQTHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKACNKWPVTEEKLESLKSAF 442 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10313.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10313.464.1 >prot_S-firma_F_contig10313.464.1 ID=prot_S-firma_F_contig10313.464.1|Name=mRNA_S-firma_F_contig10313.464.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=239bp MTVVQGGAKVELSHGKHSVAFNASHYEKLRVLYDTAAAAPDDTTHDFCRRback to top mRNA from alignment at S-firma_F_contig10313:1946..2743+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10313.464.1 ID=mRNA_S-firma_F_contig10313.464.1|Name=mRNA_S-firma_F_contig10313.464.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=798bp|location=Sequence derived from alignment at S-firma_F_contig10313:1946..2743+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10313:1946..2743+ >mRNA_S-firma_F_contig10313.464.1 ID=mRNA_S-firma_F_contig10313.464.1|Name=mRNA_S-firma_F_contig10313.464.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1434bp|location=Sequence derived from alignment at S-firma_F_contig10313:1946..2743+ (Sphaerotrichia firma ET2_F female)back to top |