mRNA_S-firma_F_contig10313.463.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10313.463.1
Unique NamemRNA_S-firma_F_contig10313.463.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10313.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10313contigS-firma_F_contig10313:379..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog946362.XP_004988641.1
Max annot lvl33154|Opisthokonta
Evalue3.9e-13
EggNOG OGs2CMQK@1|root,2QRFD@2759|Eukaryota,39S3T@33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.176591-CDS-S-firma_F_contig10313:378..6691622815563.176591-CDS-S-firma_F_contig10313:378..669Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10313 379..669 +
1696949418.1704202-CDS-S-firma_F_contig10313:378..6691696949418.1704202-CDS-S-firma_F_contig10313:378..669Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10313 379..669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10313.463.1prot_S-firma_F_contig10313.463.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10313 379..669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10313.463.1

>prot_S-firma_F_contig10313.463.1 ID=prot_S-firma_F_contig10313.463.1|Name=mRNA_S-firma_F_contig10313.463.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=97bp
MVSGYQYTNVFVATLNASYDLPLVDLGYASSDHVVVIEANTTASGTMMSG
SEKLTAPACKKFDFRLFSIAPVLAGTSYAVVGEVAKWVPVNNARFQD
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mRNA from alignment at S-firma_F_contig10313:379..669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10313.463.1 ID=mRNA_S-firma_F_contig10313.463.1|Name=mRNA_S-firma_F_contig10313.463.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=291bp|location=Sequence derived from alignment at S-firma_F_contig10313:379..669+ (Sphaerotrichia firma ET2_F female)
ATGGTAAGCGGGTACCAGTACACGAACGTGTTTGTGGCGACGCTGAACGC
GTCATACGACTTGCCCCTTGTGGACCTTGGCTACGCGTCGTCTGACCACG
TGGTGGTGATTGAGGCCAACACGACGGCGTCGGGCACGATGATGTCGGGG
TCGGAGAAGCTGACGGCGCCCGCATGCAAGAAGTTCGACTTCCGCCTGTT
CTCCATCGCGCCGGTGCTTGCGGGGACGTCGTACGCGGTTGTGGGGGAGG
TGGCCAAGTGGGTGCCGGTGAACAACGCGCGGTTCCAGGAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10313:379..669+

>mRNA_S-firma_F_contig10313.463.1 ID=mRNA_S-firma_F_contig10313.463.1|Name=mRNA_S-firma_F_contig10313.463.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=582bp|location=Sequence derived from alignment at S-firma_F_contig10313:379..669+ (Sphaerotrichia firma ET2_F female)
ATGGTAAGCGGGTACCAGTACACGAACGTGTTTGTGGCGACGCTGAACGC
GTCATACGACTTGCCCCTTGTGGACCTTGGCTACGCGTCGTCTGACCACG
TGGTGGTGATTGAGGCCAACACGACGGCGTCGGGCACGATGATGTCGGGG
TCGGAGAAGCTGACGGCGCCCGCATGCAAGAAGTTCGACTTCCGCCTGTT
CTCCATCGCGCCGGTGCTTGCGGGGACGTCGTACGCGGTTGTGGGGGAGG
TGGCCAAGTGGGTGCCGGTGAACAACGCGCGGTTCCAGGACATGGTAAGC
GGGTACCAGTACACGAACGTGTTTGTGGCGACGCTGAACGCGTCATACGA
CTTGCCCCTTGTGGACCTTGGCTACGCGTCGTCTGACCACGTGGTGGTGA
TTGAGGCCAACACGACGGCGTCGGGCACGATGATGTCGGGGTCGGAGAAG
CTGACGGCGCCCGCATGCAAGAAGTTCGACTTCCGCCTGTTCTCCATCGC
GCCGGTGCTTGCGGGGACGTCGTACGCGGTTGTGGGGGAGGTGGCCAAGT
GGGTGCCGGTGAACAACGCGCGGTTCCAGGAC
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