mRNA_S-firma_F_contig10311.462.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10311.462.1
Unique NamemRNA_S-firma_F_contig10311.462.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: UPI0001FE586D (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE586D)

HSP 1 Score: 154 bits (388), Expect = 5.890e-38
Identity = 137/409 (33.50%), Postives = 199/409 (48.66%), Query Frame = 1
Query:    1 FFVQVHALLNPALPNWRTHPVVVQQHQDVIAMSRSAKALGGFKHMTPAAARALGG-VTLVHVFEEG-GRVSYRPYREVSRRVMDALRGETGGV------VQRLSMDEAVVDVS-----------------------------DDVGGGDVGAR-----LVAGGVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQGVPMDQLEELFGAT--VGARVYNDVRGQDDSEVVDAGPPHSIRSQMSLTNVPLQRLGGGDLNPVAPWHLGQVLPV-MHVVCMDLVTRVVADAAEHGRHPATLTVSVRLSQAPPRAAPVYPYPLSVTQVAVCATSFKQSQGPPISSMFPVVSKPAEEAKAP 1092
            FF+Q   L  P L   R  P+ +QQHQD+IA+S  A+ALG  KH  P   RA    VT+VHV   G G+ +YR YR +S  V D +R     V      V+  S+DE  +D++                             + V GG + +      L AG V+  +LRAA+L+   +  S G+A +KLLAKLA R+AK  G+   V         L  L    IP  GG++ D  + +G++T G+    P   L  LFGA+    A +    RG+DDSEVVD G   SI SQM+LT     R GGG    + P  + + + + +  +  DL  R + D   H RHP+TLTV+ R+     R+   +P+PL    +   + S + + GP +  + P +S  A+ A+ P
Sbjct:   18 FFIQAEILRRPWL---RGKPIALQQHQDIIALSYEARALGIAKHTKPGVVRATHPEVTIVHVPLRGLGKATYRDYRLLSICVFDVVRSFATAVPSAPVTVEVASIDEGYLDLTARAKHLMVQTIAQEASNERLLHRQRYDDGEQVHGGVLPSGGPSNLLEAGAVLIAELRAAILSVLSLECSAGIAHNKLLAKLATRLAKPNGQVVVVN-----SNPLLLLQEAGIPSFGGKVTDTLKTVGIETGGDVLRAPPSFLASLFGASSPTPASLLRACRGEDDSEVVDRGLIKSISSQMALTAWARPRFGGGPTATIEPVGVSEDISLFIRELAEDLAERTLEDQIVHSRHPSTLTVAYRVDDTWSRSR-TFPFPLQAMNMVEISVS-ELTLGPVV--LRPALSSAAKTARRP 414          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: E1Z660_CHLVA (UmuC domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z660_CHLVA)

HSP 1 Score: 140 bits (354), Expect = 8.920e-34
Identity = 129/341 (37.83%), Postives = 176/341 (51.61%), Query Frame = 1
Query:    1 FFVQVHALLNPALPNWRTHPVVVQQHQDVIAMSRSAKALGGFKHMTPAAAR----ALGGVTLVHV-FEEGGRVSYRPYREVSRRVMDALRG-ETGGVVQRLSMDEAVVDVSDDVGGGDVGARLV------AGGVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQGVPMDQLEELFGA--TVGARVYNDVRGQDDSEVVDAGPPHSIRSQMSLTN--VPLQRLGG----------GDLNPVA---PWHLGQVLPVMHVVCMDLVTRVVADAAEHG-RHPATLTVSVR 933
            FFVQ   L +P++       V VQQHQD+IA + +AK  G  KHM PA AR    A+GG T+VHV    GGRVSY+PYRE+S R+M  LR      VV++ S+DEA + +                    A      + +AAV    G+  SVGVA S+LLAKLA   AK  G  + V   +A   +L+  P  ++PG GG+ A+AFE  G+  A + Q     QLE+L G      A++    RG D +   + GPP ++  QMSLT   +P+    G          G L P+    P    +V  +M  + +DLV RV+ D+AE G R P TLT S+R
Sbjct:   11 FFVQAEQLKHPSIQG---KAVAVQQHQDIIAANHAAKCAGVTKHMAPAEARRLLKAVGG-TVVHVHLAPGGRVSYQPYRELSARMMRLLRALPWAAVVEKASIDEAYLLLQPGPXXXXXXXXXXXSVSPQAALQRAHEAKAAVQQQLGMCVSVGVAPSRLLAKLASAAAKPDGV-RLVADQQAALHLLSQTPAHKLPGYGGKAAEAFERHGIAAATDLQRYSQHQLEQLLGLKPAAAAQLAQWCRGVDTTP--ERGPPKTLSVQMSLTPQLLPMHPSQGRTVSASGGPPGVLEPLVVGKPGFRRRVRQLMEAMGLDLVQRVLEDSAEEGGRWPRTLTASLR 344          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A7S0WMN6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WMN6_9CHLO)

HSP 1 Score: 133 bits (334), Expect = 3.030e-31
Identity = 114/297 (38.38%), Postives = 149/297 (50.17%), Query Frame = 1
Query:  190 EGG-----RVSYRPYREVSRRVMDALRGETG-GVVQRLSMDEAVVDVSDDVG--------GGDVGARLVAGGVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGE----------AQGVPMDQLEELFGATVGARVYNDVRGQDDSEVVDAGPPHSIRSQMSLTNVPLQRLGG---------------GDLNPVAPWHLG----QVLPVMHVVCMDLVTRVVADAAEHGRHPATLTVSVRLSQAPP 951
            EGG     RVSYRPYRE S  ++  L+   G GVV+R S+DEA + +S   G        GG     L AG ++G  +RA V    GVV SVGVAT+KLLAKLA + AK  G  Q V    A   +L   P+ R+PG GG++ADA +  GV  AG+          A G  +  L     A      Y   +G D+ EVVD GPP S + QM+LT VPL  L G               G L P+ P   G    ++  ++  +C DLV+R++ D  EHGR P  L V++     PP
Sbjct:    2 EGGGRPAPRVSYRPYRETSAALIKLLKSVPGVGVVERASIDEAYLTLSAQDGALGQPAAPGGSNSDALHAGRLLGEHIRAQVKQELGVVVSVGVATNKLLAKLASQAAKPDGL-QSVDTRAAAAALLEHTPITRLPGMGGKVADALQAAGVTRAGQVAQLLQQPPGAGGAALVALGVPPAAAATLAAY--AQGIDNREVVDKGPPKSFQVQMTLTPVPLPALVGSKAAEGAAGKAKQPPGVLRPL-PCAGGDTRARLAQILRPMCRDLVSRLLLDKHEHGRWPRKLVVTLATMAPPP 294          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A0D2KZP9_9CHLO (UmuC domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KZP9_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 1.820e-24
Identity = 96/227 (42.29%), Postives = 121/227 (53.30%), Query Frame = 1
Query:    1 FFVQVHALLNPALPNWRTHPVVVQQHQDVIAMSRSAKALGGFKHMTPAAARAL---GGVTLVHVFEEGG-RVSYRPYREVSRRVMDALRG-ETGGVVQRLSMDEAVV----DVSDDVGGG-------------DVGARLVAGGV-IGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVM-LPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTA 609
            FF QV  L +P+L      P+ + Q  DVI++   A+ LG  KHM PA ARA+    G  LVHVF EGG RVSYRPYRE S  +M  LR      VV++ S+DEA V          GGG             +  A  ++ G+ +G  +R A  A  G+V SVGVAT+KLLAKLA R AK  G   F +    AV  +L    V  +PG GGQ+A A E  G+K A
Sbjct:   14 FFCQVEVLRDPSLVG---KPLAILQQYDVISVDHQARRLGVQKHMVPAQARAILERNGGRLVHVFLEGGNRVSYRPYREASGALMRLLRRFVNAAVVEKASIDEAYVLCQAPAGMPAGGGXXXXXXXXXEEGEEAEAWDLSPGIRLGSAIRDASRAELGLVLSVGVATNKLLAKLASRAAKPDG--LFALETAAAVRRLLQQTSVASLPGLGGQVAGALEKAGLKVA 235          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A813GRQ4_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GRQ4_POLGL)

HSP 1 Score: 104 bits (259), Expect = 1.560e-20
Identity = 112/348 (32.18%), Postives = 162/348 (46.55%), Query Frame = 1
Query:    1 FFVQVHALLNPALPNWRTHPVVVQQHQDVIAMSRSAKALGGFKHMTPAAAR----ALGGVTLVHVFEE---GGRVSYRPYREVSRRVMDALRGETGG------VVQRLSMDEAVVDVSDDVGGGDVGARLVAGGVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKS-RGEPQFVM--LPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQGVPMDQLEELFGATVG------ARVYNDVRGQDDSEVVDAGPPHSIRSQMSLTNVPLQRL------GGGDLNPVAPWHLGQVLP-----------VMHVVCMDLVTRVVADAAEHGRHPATLTVS 927
            FF+ VH   +P+L      P+V+ Q+ DVI +S  AKA G  KHM P+ A+    A+GG  +VH F     G RV Y PY   SR +   LR +         V++R S+DEA +DV+D  G     + L AG  +  ++ A +  A GV  SVGVA ++LLAKLA   AK  +G+   V+    E+   +L   PV R+PGCG +  +    LG  TA + Q   +   EEL  A  G       R+     G+D + V  A P  S+     L++  L  L      G   +     W  G  +            ++  + +D+  R V +  E G+ P  LTVS
Sbjct:  669 FFLAVHKRYDPSLRE--AGPLVLWQYNDVICISPEAKAAGVRKHMRPSEAQPMVDAIGG-RMVHAFSRRWPGPRVWYGPYMSTSREMFTLLRQKLDEDLAGKYVLERASVDEAYLDVTDSTG-----SSLDAGAALARRITAFLHEAMGVCISVGVARNRLLAKLASVAAKPPQGDGLRVIEDSEESAQMLLQSTPVTRLPGCGSR-GEQLASLGAHTAADLQ--QLVGTEELRSALSGLSIDVAGRIAEACHGRDGAPVRAADPKKSLVVTSWLSDACLAELAMKTREGPASVTVGNGWTFGPQVEKGVTNLTRARWLLLGLVLDMEERAVQECLEFGQLPTKLTVS 1005          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A8J5XZ23_DIALT (UmuC domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZ23_DIALT)

HSP 1 Score: 101 bits (251), Expect = 1.290e-19
Identity = 117/374 (31.28%), Postives = 158/374 (42.25%), Query Frame = 1
Query:    1 FFVQVHALLNPALPNWRTHPVVVQQHQDVIAMSRSAKALGGFKHMTPAAARAL---GGVTLVHVFEE---GGRVSYRPYREVSRRVMDALRGETGG----------------VVQRLSMDEAVVDVS--------------DDVGGGDVGARLVAGGVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAK--SRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQG---VPMDQLEEL-FGATVGARVYNDVRGQDDSEVVDAGPPHSIRSQMSLTNVPLQRL---GGGDLNPVAPWHLGQV----LP--------------VMHVVCMDLVTRVVADAAEHGRHPATLTVSVR 933
            FF+ VH  ++P+L   R  P  V Q+ DVI +S SA+ LG  KHM P AAR L    G  LVH F     G RV Y PY   SR +  ALR                     +V+  S+DE  VD+S                    D  A       +G +LR AV A+TG+V SVGV+ SKLLAKLA   AK    G  +  +   A   +L G     +PG G   A A + LGV T  E +     P +   EL  G      V+   RG+ D   V A  P S+      T+  + +L    G    P     +G      +P              ++  +C+DL  RV+  A  HGR P  L ++++
Sbjct:   67 FFLAVHERVDPSL---RDVPAAVWQYNDVICVSHSARPLGVRKHMRPEAARPLVEAAGGRLVHAFWRDWPGPRVWYGPYNAASRELFAALRHAASDAVAAAVPDRCARAAPPLVEHASIDEGYVDLSALCAPCAVVGPPRLPAAEAFDERALAAIAERVGARLRGAVRASTGLVVSVGVSHSKLLAKLASSAAKPPDGGGVRVAVGEAAARALLDGSRARALPGLGNH-AHALDALGVGTVAELRARFASPAELRAELHLGEAQALAVWARARGEADCGAVRAVVPQSVTVTSWSTHTTVAQLLPAAGAQPLPAGGVRIGSAGWAFVPHASRGKTNDSRPGWLLLALCLDLDERVLEHALLHGRLPTRLALALQ 436          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A5J4XYT4_9CHLO (DNA polymerase IV n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XYT4_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 3.700e-17
Identity = 82/269 (30.48%), Postives = 131/269 (48.70%), Query Frame = 1
Query:  187 EEGGRVSYRPYREVSRRVMDALRGETG-GVVQRLSMDEAVVDVSDDVGGGDVG--ARLVAGGVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQGVPMDQLEELFG--ATVGARVYNDVRGQDDSEVVDAGPPHSIRSQMSLTNVPLQR---------LGGGDLNPVAPWHLG------QVLPVMHVVCMDLVTRVVADAAEHGRHPATLTVSVR 933
            E GGRVSY+PYR+VS+ ++  LR   G GV+++ S+DEA +    + G    G  A +     + G +R AVL    +V SVG+A++K+LAKLA +  K  G       P A+  +L    V R+P CGG++ D     G+ T  + Q     QL++  G  A    ++     G D + V    PP ++  QM+LT +PL           + GG    + P  +G      ++  ++  +  D++ RV+ D  E  R P    + +R
Sbjct:    2 EAGGRVSYKPYRDVSKVLISRLRQFAGVGVIEKASIDEAYILFKLESGQPLHGPMAAMQQAAQLAGTIRQAVLQELSLVVSVGIASNKMLAKLASQAIKPDGILVIDGDP-AMQNLLKTTAVSRLPRCGGKVTDTLTLAGINTVTDLQAWSAQQLQQDLGFAADQAKQLSEWSHGFDANPVAKRPPPKTLSIQMTLTPIPLVMHPSMGRDIAVAGGKAGLLEPLPIGAANFRERLDGLLVAMGADILGRVMGDKMEEDRWPQKFELQMR 269          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A7Y6E2W0_9ACTN (DNA polymerase IV (Fragment) n=1 Tax=Streptomycetaceae bacterium TaxID=2021369 RepID=A0A7Y6E2W0_9ACTN)

HSP 1 Score: 90.9 bits (224), Expect = 1.660e-16
Identity = 74/180 (41.11%), Postives = 93/180 (51.67%), Query Frame = 1
Query:  208 YRPYREVSRRVMDALRGETGGVVQRLSMDEAVVDVSDDVGGGDVGARLVAGGV--IGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQGVPMDQLEELFGATVGARVYNDVRGQDDSEVVDAGPPHSI 741
            +  YREVS RVM AL GE   +V+ LS+DEA VD+      G  GA L   G   +  KLRA + AATG+ ASVGVA SKLLAK+A   AK  G    V+ P     +L  LPV  + G G   A+A   +G+ T  +      D+L  LFG   G  ++    G DD  VV      SI
Sbjct:   78 FTAYREVSDRVM-ALLGELSPLVEPLSLDEAFVDLE----AGPYGAGLDTAGATELARKLRADITAATGLTASVGVAPSKLLAKIASEAAKPDG--LVVVAPGEERALLDPLPVRALWGVGPATAEAMRKVGIATVADIAATDPDELVRLFGQAHGRALHEHALGIDDRPVVAERDAKSI 250          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A521MM52_9MICO (DNA polymerase IV n=1 Tax=Herbiconiux sp. TaxID=1871186 RepID=A0A521MM52_9MICO)

HSP 1 Score: 90.5 bits (223), Expect = 2.380e-16
Identity = 93/254 (36.61%), Postives = 118/254 (46.46%), Query Frame = 1
Query:    1 FFVQVHALLNPALPNWRTHPVVV---QQHQDVIAMSRSAKALGGFKHMTPAAARAL--GGVTLVHVFEEGGRVSYRPYREVSRRVMDALRGETGGVVQRLSMDEAVVDVSDDVGGGDVGARLVAG--GVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQGVPMDQLEELFGATVGARVYNDVRGQDDSEVVDAGPPHSI 741
            FF  V  L  P L   R  PV+V        V + +  A+A G    M   AA  L  G V L    +         YR+ SR VM AL  E   +V+ LS+DEA +DVS        GAR + G   VI  +LRA VLA TG+  SVGVA +K +AKLA   AK  G    V+ P  V G L  LPV  + G G   A   E LG++T G+    P+D L    G   GA+++    G D   VV      S+
Sbjct:   24 FFASVELLSRPEL---RGRPVIVGGRSARAVVTSATYEARAYGVHSAMPVGAALRLCPGAVVLEPHMDR--------YRDASRAVM-ALFREVTPLVEPLSIDEAFLDVS--------GARRLLGESDVIAERLRARVLAETGLPCSVGVAPTKFMAKLASGRAKPDG--MLVVRPSEVLGYLHPLPVRALWGVGESTASRLERLGLRTVGDIASTPLDALVRAVGEASGAKLHELANGIDTRGVVPTSQEKSV 255          
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Match: A0A0S1AW82_9GAMM (DNA polymerase IV n=14 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A0S1AW82_9GAMM)

HSP 1 Score: 89.7 bits (221), Expect = 3.040e-16
Identity = 65/178 (36.52%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  217 YREVSRRVMDALRGETGGVVQRLSMDEAVVDVSDDVGGGDVGARLVAGGVIGGKLRAAVLAATGVVASVGVATSKLLAKLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGVKTAGEAQGVPMDQLEELFGATVGARVYNDVRGQDDSEVVDAGPPHSIRSQ 750
            Y+ VSR++ +     T  +V+ LS+DEA +DVS       +   +         +RA +   T + AS G+A +K LAK+A    K  G  QFV+ P  V   L  LPV R+PG G  +      LG+ T G+ +G+P++QLE LFG T G R+Y   RG D+  V    P  SI S+
Sbjct:   91 YKAVSRQIREIFLQHTP-LVEPLSLDEAYLDVSGSPTCDGIATEIAR------TIRAQIREVTSLTASAGIAPNKFLAKIASDWRKPDG--QFVVPPARVEQFLTPLPVSRVPGVGKVMEGRLAALGIATVGDLRGLPLEQLEALFG-TFGQRLYRRARGIDERPVEPDQPVQSISSE 258          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10311.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0001FE586D5.890e-3833.50hypothetical protein n=1 Tax=Capsaspora owczarzaki... [more]
E1Z660_CHLVA8.920e-3437.83UmuC domain-containing protein n=1 Tax=Chlorella v... [more]
A0A7S0WMN6_9CHLO3.030e-3138.38Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A0D2KZP9_9CHLO1.820e-2442.29UmuC domain-containing protein n=1 Tax=Monoraphidi... [more]
A0A813GRQ4_POLGL1.560e-2032.18Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A8J5XZ23_DIALT1.290e-1931.28UmuC domain-containing protein n=1 Tax=Diacronema ... [more]
A0A5J4XYT4_9CHLO3.700e-1730.48DNA polymerase IV n=1 Tax=Trebouxia sp. A1-2 TaxID... [more]
A0A7Y6E2W0_9ACTN1.660e-1641.11DNA polymerase IV (Fragment) n=1 Tax=Streptomyceta... [more]
A0A521MM52_9MICO2.380e-1636.61DNA polymerase IV n=1 Tax=Herbiconiux sp. TaxID=18... [more]
A0A0S1AW82_9GAMM3.040e-1636.52DNA polymerase IV n=14 Tax=Xanthomonadaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10311contigS-firma_F_contig10311:3636..5159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog192875.XP_004365600.1
Preferred namePOLH
PFAMsIMS,IMS_C
Max annot lvl33154|Opisthokonta
KEGG koko:K03509
KEGG Pathwayko01524,ko03460,map01524,map03460
GOsGO:0000003,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006290,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009790,GO:0009792,GO:0009987,GO:0010225,GO:0010564,GO:0010948,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901976,GO:1901977,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2001020,GO:2001021
Evalue9.66e-39
EggNOG OGsCOG0389@1|root,KOG2095@2759|Eukaryota,38BYF@33154|Opisthokonta
EC2.7.7.7
DescriptionDNA polymerase
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size1128
Cds size1128
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.1127114-CDS-S-firma_F_contig10311:3635..38061622815563.1127114-CDS-S-firma_F_contig10311:3635..3806Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 3636..3806 -
1696949418.1482182-CDS-S-firma_F_contig10311:3635..38061696949418.1482182-CDS-S-firma_F_contig10311:3635..3806Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 3636..3806 -
1622815563.1260455-CDS-S-firma_F_contig10311:4202..51591622815563.1260455-CDS-S-firma_F_contig10311:4202..5159Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 4203..5159 -
1696949418.1585753-CDS-S-firma_F_contig10311:4202..51591696949418.1585753-CDS-S-firma_F_contig10311:4202..5159Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 4203..5159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10311.462.1prot_S-firma_F_contig10311.462.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10311 3636..5159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10311.462.1

>prot_S-firma_F_contig10311.462.1 ID=prot_S-firma_F_contig10311.462.1|Name=mRNA_S-firma_F_contig10311.462.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=376bp
FFVQVHALLNPALPNWRTHPVVVQQHQDVIAMSRSAKALGGFKHMTPAAA
RALGGVTLVHVFEEGGRVSYRPYREVSRRVMDALRGETGGVVQRLSMDEA
VVDVSDDVGGGDVGARLVAGGVIGGKLRAAVLAATGVVASVGVATSKLLA
KLACRVAKSRGEPQFVMLPEAVGGVLAGLPVGRIPGCGGQIADAFEGLGV
KTAGEAQGVPMDQLEELFGATVGARVYNDVRGQDDSEVVDAGPPHSIRSQ
MSLTNVPLQRLGGGDLNPVAPWHLGQVLPVMHVVCMDLVTRVVADAAEHG
RHPATLTVSVRLSQAPPRAAPVYPYPLSVTQVAVCATSFKQSQGPPISSM
FPVVSKPAEEAKAPEPEPEPPAPTPT
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mRNA from alignment at S-firma_F_contig10311:3636..5159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10311.462.1 ID=mRNA_S-firma_F_contig10311.462.1|Name=mRNA_S-firma_F_contig10311.462.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1524bp|location=Sequence derived from alignment at S-firma_F_contig10311:3636..5159- (Sphaerotrichia firma ET2_F female)
TTCTTTGTGCAAGTGCACGCGCTGTTGAACCCCGCCCTCCCCAATTGGCG TACGCACCCCGTCGTGGTCCAGCAGCACCAGGACGTCATTGCCATGAGCC GCTCCGCGAAAGCCCTGGGCGGCTTCAAGCACATGACCCCCGCGGCAGCC CGCGCCCTTGGGGGCGTCACTCTGGTGCACGTGTTTGAGGAGGGCGGCCG GGTGTCGTACCGGCCGTACCGCGAGGTCAGTCGGAGGGTTATGGACGCCT TGCGGGGCGAGACGGGGGGTGTCGTGCAGCGCTTGAGCATGGACGAGGCG GTGGTTGACGTGTCGGATGATGTTGGGGGCGGTGACGTGGGGGCCCGACT GGTGGCTGGGGGCGTGATTGGGGGCAAGCTTCGGGCGGCTGTCCTGGCCG CGACGGGGGTTGTGGCGTCGGTGGGCGTCGCCACCTCCAAACTGCTGGCA AAGCTTGCCTGCCGGGTGGCAAAGTCTCGTGGGGAGCCGCAGTTCGTCAT GCTACCGGAGGCGGTGGGGGGCGTCCTGGCTGGCCTCCCCGTGGGGCGCA TTCCGGGGTGTGGTGGCCAAATCGCGGACGCGTTTGAGGGCCTGGGCGTC AAGACGGCGGGCGAGGCGCAGGGGGTGCCAATGGACCAACTGGAAGAACT GTTTGGGGCCACGGTGGGCGCCCGCGTGTACAACGACGTCCGCGGGCAGG ACGACAGTGAGGTGGTGGACGCCGGCCCGCCACACTCCATACGCAGCCAA ATGTCGCTGACCAACGTACCCTTGCAGCGCCTTGGCGGGGGTGACCTGAA CCCCGTGGCGCCCTGGCACCTGGGCCAAGTCCTCCCCGTGATGCACGTCG TTTGCATGGACCTGGTGACCCGCGTGGTGGCAGACGCCGCGGAGCACGGG CGCCACCCTGCCACCCTGACTGTCAGCGTGCGGTTGTCACAGGCACCACC GCGGGCCGTGCTCGAATGGCCGCCGTCCCAGGCGGTGTTCACCGTCGCTG GGGCCCGGTTTGTGGTTGGGGCGCGGGGTGCTCCCAGCGGCGAACCCCAC GGCGGGCCGTGCGTGGTGTGGAGCCGCCCGGCCGCCGCCCTCGTGGGCGC CAACCTCCCCATGGTGGACCGCTCCGAGGCCTTCCCCTCCGTGCACGCCA CCAAGGCCAAGTTGGCAGTTGCGGTCAAGGTTGCCGCCCTGCGGGCGTTT TGCCGTGCCGTGTTGGCGTCCGCTTCGAACTACGGATGGGCTTGGAGCGG CGGGTGGGTGGCGTGCCCCAAACCCGTGCGGCCGCCAGCCGGTGCGTCCG CGGCGCCCCCTGGTGGCAAGCGGCCGCGACTGGAGGCCACGCCAAGCCAT AAGGCGCCCGTGTACCCGTACCCACTGTCCGTGACGCAGGTCGCGGTGTG CGCCACCAGCTTTAAGCAGTCACAGGGGCCCCCCATTTCCTCCATGTTTC CCGTGGTGTCCAAGCCAGCTGAGGAGGCCAAAGCACCGGAGCCGGAGCCG GAGCCCCCCGCACCCACGCCAACA
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Coding sequence (CDS) from alignment at S-firma_F_contig10311:3636..5159-

>mRNA_S-firma_F_contig10311.462.1 ID=mRNA_S-firma_F_contig10311.462.1|Name=mRNA_S-firma_F_contig10311.462.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2256bp|location=Sequence derived from alignment at S-firma_F_contig10311:3636..5159- (Sphaerotrichia firma ET2_F female)
TTCTTTGTGCAAGTGCACGCGCTGTTGAACCCCGCCCTCCCCAATTGGCG
TACGCACCCCGTCGTGGTCCAGCAGCACCAGGACGTCATTGCCATGAGCC
GCTCCGCGAAAGCCCTGGGCGGCTTCAAGCACATGACCCCCGCGGCAGCC
CGCGCCCTTGGGGGCGTCACTCTGGTGCACGTGTTTGAGGAGGGCGGCCG
GGTGTCGTACCGGCCGTACCGCGAGGTCAGTCGGAGGGTTATGGACGCCT
TGCGGGGCGAGACGGGGGGTGTCGTGCAGCGCTTGAGCATGGACGAGGCG
GTGGTTGACGTGTCGGATGATGTTGGGGGCGGTGACGTGGGGGCCCGACT
GGTGGCTGGGGGCGTGATTGGGGGCAAGCTTCGGGCGGCTGTCCTGGCCG
CGACGGGGGTTGTGGCGTCGGTGGGCGTCGCCACCTCCAAACTGCTGGCA
AAGCTTGCCTGCCGGGTGGCAAAGTCTCGTGGGGAGCCGCAGTTCGTCAT
GCTACCGGAGGCGGTGGGGGGCGTCCTGGCTGGCCTCCCCGTGGGGCGCA
TTCCGGGGTGTGGTGGCCAAATCGCGGACGCGTTTGAGGGCCTGGGCGTC
AAGACGGCGGGCGAGGCGCAGGGGGTGCCAATGGACCAACTGGAAGAACT
GTTTGGGGCCACGGTGGGCGCCCGCGTGTACAACGACGTCCGCGGGCAGG
ACGACAGTGAGGTGGTGGACGCCGGCCCGCCACACTCCATACGCAGCCAA
ATGTCGCTGACCAACGTACCCTTGCAGCGCCTTGGCGGGGGTGACCTGAA
CCCCGTGGCGCCCTGGCACCTGGGCCAAGTCCTCCCCGTGATGCACGTCG
TTTGCATGGACCTGGTGACCCGCGTGGTGGCAGACGCCGCGGAGCACGGG
CGCCACCCTGCCACCCTGACTGTCAGCGTGCGGTTGTCACAGGCACCACC
GCGGGCCTTCTTTGTGCAAGTGCACGCGCTGTTGAACCCCGCCCTCCCCA
ATTGGCGTACGCACCCCGTCGTGGTCCAGCAGCACCAGGACGTCATTGCC
ATGAGCCGCTCCGCGAAAGCCCTGGGCGGCTTCAAGCACATGACCCCCGC
GGCAGCCCGCGCCCTTGGGGGCGTCACTCTGGTGCACGTGTTTGAGGAGG
GCGGCCGGGTGTCGTACCGGCCGTACCGCGAGGTCAGTCGGAGGGTTATG
GACGCCTTGCGGGGCGAGACGGGGGGTGTCGTGCAGCGCTTGAGCATGGA
CGAGGCGGTGGTTGACGTGTCGGATGATGTTGGGGGCGGTGACGTGGGGG
CCCGACTGGTGGCTGGGGGCGTGATTGGGGGCAAGCTTCGGGCGGCTGTC
CTGGCCGCGACGGGGGTTGTGGCGTCGGTGGGCGTCGCCACCTCCAAACT
GCTGGCAAAGCTTGCCTGCCGGGTGGCAAAGTCTCGTGGGGAGCCGCAGT
TCGTCATGCTACCGGAGGCGGTGGGGGGCGTCCTGGCTGGCCTCCCCGTG
GGGCGCATTCCGGGGTGTGGTGGCCAAATCGCGGACGCGTTTGAGGGCCT
GGGCGTCAAGACGGCGGGCGAGGCGCAGGGGGTGCCAATGGACCAACTGG
AAGAACTGTTTGGGGCCACGGTGGGCGCCCGCGTGTACAACGACGTCCGC
GGGCAGGACGACAGTGAGGTGGTGGACGCCGGCCCGCCACACTCCATACG
CAGCCAAATGTCGCTGACCAACGTACCCTTGCAGCGCCTTGGCGGGGGTG
ACCTGAACCCCGTGGCGCCCTGGCACCTGGGCCAAGTCCTCCCCGTGATG
CACGTCGTTTGCATGGACCTGGTGACCCGCGTGGTGGCAGACGCCGCGGA
GCACGGGCGCCACCCTGCCACCCTGACTGTCAGCGTGCGGTTGTCACAGG
CACCACCGCGGGCCGCGCCCGTGTACCCGTACCCACTGTCCGTGACGCAG
GTCGCGGTGTGCGCCACCAGCTTTAAGCAGTCACAGGGGCCCCCCATTTC
CTCCATGTTTCCCGTGGTGTCCAAGCCAGCTGAGGAGGCCAAAGCACCGG
AGCCGGAGCCGGAGCCCCCCGCACCCACGCCAACAGCGCCCGTGTACCCG
TACCCACTGTCCGTGACGCAGGTCGCGGTGTGCGCCACCAGCTTTAAGCA
GTCACAGGGGCCCCCCATTTCCTCCATGTTTCCCGTGGTGTCCAAGCCAG
CTGAGGAGGCCAAAGCACCGGAGCCGGAGCCGGAGCCCCCCGCACCCACG
CCAACA
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