mRNA_S-firma_F_contig10311.461.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10311.461.1
Unique NamemRNA_S-firma_F_contig10311.461.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10311.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10311contigS-firma_F_contig10311:2902..3462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.0036645-CDS-S-firma_F_contig10311:2901..32431622815563.0036645-CDS-S-firma_F_contig10311:2901..3243Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 2902..3243 +
1696949418.0998316-CDS-S-firma_F_contig10311:2901..32431696949418.0998316-CDS-S-firma_F_contig10311:2901..3243Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 2902..3243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.0136712-UTR-S-firma_F_contig10311:3243..34621622815563.0136712-UTR-S-firma_F_contig10311:3243..3462Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10311 3244..3462 +
1696949418.1090124-UTR-S-firma_F_contig10311:3243..34621696949418.1090124-UTR-S-firma_F_contig10311:3243..3462Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10311 3244..3462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10311.461.1prot_S-firma_F_contig10311.461.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10311 2902..3243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10311.461.1

>prot_S-firma_F_contig10311.461.1 ID=prot_S-firma_F_contig10311.461.1|Name=mRNA_S-firma_F_contig10311.461.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=114bp
GEEGGGGCQGQAEDRQGGGGQGQGRGGEGCRRAEEGAGQGGGQRKEPGGA
AEGPGGQAGKGEGGAGGDDQGAGGEREEGGGGPGRRQEDAEREDCGSPEE
GGRRPEEADRQEG*
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mRNA from alignment at S-firma_F_contig10311:2902..3462+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10311.461.1 ID=mRNA_S-firma_F_contig10311.461.1|Name=mRNA_S-firma_F_contig10311.461.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=561bp|location=Sequence derived from alignment at S-firma_F_contig10311:2902..3462+ (Sphaerotrichia firma ET2_F female)
GGCGAAGAAGGGGGTGGAGGATGCCAAGGCCAAGCTGAAGACCGCCAAGG
AGGCGGAGGGCAAGGCCAAGGACGCGGCGGAGAAGGCTGCCGCCGCGCTG
AAGAAGGCGCAGGACAAGGCGGCGGCCAGCGCAAAGAGCCTGGCGGAGCA
GCTGAAGGACCTGGAGGCCAAGCTGGCAAAGGAGAAGGCGGCGCTGGAGG
CGACGACCAAGGCGCAGGCGGAGAACGTGAAGAAGGTGGAGGAGGCCCTG
GCCGCCGCCAAGAAGACGCAGAGCGAGAAGATTGCGGAAGCCCAGAAGAA
GGTGGACGCCGCCCAGAAGAAGCTGACCGACAAGAAGGCTGAGGCGGGGA
CGTCCTCCTCCACCGCATCCTCCACCGCCTCCACCAGCACGGACGGCTCC
TCCACCGCTTCCTCCTCCTCTTCCTCCACGACCTCCACCATGCGCTTCGC
CGACGCCGCCCCCCAGTCCGGCTTCTTCCAGCGCCTTGTGAACTACGGCG
AGCGCATGATGCGGCTGAACTAAGTGCCCCCCCTTTAAATCTTTATTTGT
GCGTACTCCAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10311:2902..3462+

>mRNA_S-firma_F_contig10311.461.1 ID=mRNA_S-firma_F_contig10311.461.1|Name=mRNA_S-firma_F_contig10311.461.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_F_contig10311:2902..3462+ (Sphaerotrichia firma ET2_F female)
GGCGAAGAAGGGGGTGGAGGATGCCAAGGCCAAGCTGAAGACCGCCAAGG
AGGCGGAGGGCAAGGCCAAGGACGCGGCGGAGAAGGCTGCCGCCGCGCTG
AAGAAGGCGCAGGACAAGGCGGCGGCCAGCGCAAAGAGCCTGGCGGAGCA
GCTGAAGGACCTGGAGGCCAAGCTGGCAAAGGAGAAGGCGGCGCTGGAGG
CGACGACCAAGGCGCAGGCGGAGAACGTGAAGAAGGTGGAGGAGGCCCTG
GCCGCCGCCAAGAAGACGCAGAGCGAGAAGATTGCGGAAGCCCAGAAGAA
GGTGGACGCCGCCCAGAAGAAGCTGACCGACAAGAAGGCTGAGGCGAAGA
AGGGGGTGGAGGATGCCAAGGCCAAGCTGAAGACCGCCAAGGAGGCGGAG
GGCAAGGCCAAGGACGCGGCGGAGAAGGCTGCCGCCGCGCTGAAGAAGGC
GCAGGACAAGGCGGCGGCCAGCGCAAAGAGCCTGGCGGAGCAGCTGAAGG
ACCTGGAGGCCAAGCTGGCAAAGGAGAAGGCGGCGCTGGAGGCGACGACC
AAGGCGCAGGCGGAGAACGTGAAGAAGGTGGAGGAGGCCCTGGCCGCCGC
CAAGAAGACGCAGAGCGAGAAGATTGCGGAAGCCCAGAAGAAGGTGGACG
CCGCCCAGAAGAAGCTGACCGACAAGAAGGCTGA
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