mRNA_S-firma_F_contig10311.460.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10311.460.1
Unique NamemRNA_S-firma_F_contig10311.460.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10311.460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10311contigS-firma_F_contig10311:1851..2814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size496
Cds size492
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10311.460.1prot_S-firma_F_contig10311.460.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10311 1851..2812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.940784-CDS-S-firma_F_contig10311:1850..19091622815562.940784-CDS-S-firma_F_contig10311:1850..1909Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 1851..1909 +
1696949418.04707-CDS-S-firma_F_contig10311:1850..19091696949418.04707-CDS-S-firma_F_contig10311:1850..1909Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 1851..1909 +
1622815562.954558-CDS-S-firma_F_contig10311:2324..24541622815562.954558-CDS-S-firma_F_contig10311:2324..2454Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 2325..2454 +
1696949418.077727-CDS-S-firma_F_contig10311:2324..24541696949418.077727-CDS-S-firma_F_contig10311:2324..2454Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 2325..2454 +
1622815562.9647512-CDS-S-firma_F_contig10311:2509..28121622815562.9647512-CDS-S-firma_F_contig10311:2509..2812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 2510..2812 +
1696949418.0883257-CDS-S-firma_F_contig10311:2509..28121696949418.0883257-CDS-S-firma_F_contig10311:2509..2812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10311 2510..2812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10311.460.1

>prot_S-firma_F_contig10311.460.1 ID=prot_S-firma_F_contig10311.460.1|Name=mRNA_S-firma_F_contig10311.460.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=164bp
LSRRARPSLFNMRTIAVLAVLVVAATAGNLRDPGTVLDVANTDIAAAKAA
ASRAADALKNAAPELALGANTKASASPKPKAPKATEGDALGSATGSTATA
TTGSATTTTGTATTATTADVATATAANQKAQDELTAAKAATKAAEDAVKA
AEAKVTAAQDCLKT
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mRNA from alignment at S-firma_F_contig10311:1851..2814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10311.460.1 ID=mRNA_S-firma_F_contig10311.460.1|Name=mRNA_S-firma_F_contig10311.460.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=964bp|location=Sequence derived from alignment at S-firma_F_contig10311:1851..2814+ (Sphaerotrichia firma ET2_F female)
CTTAGTCGTCGGGCTCGCCCCTCCTTGTTTAACATGCGGACCATCGCCGT
GCTTGCAGTGTGAGTGGTTGGGGTGTGCCTGCGTTGGTTTGGGGGGGAAA
CGCCCTCGGGGAAGCAGTGTGGACGTCGCGGACCAGTTTTTGTGTGGTGT
TGTGTGGTGGGGTTTGTGGGTGTGTCGTTGTGTGCGTGTGGCCCTGCGGT
GGCTGTGCTTGGGGCTGGGGGTGCAGGCTGCTGCCTTGCCCCACCCCCAC
ACACTAAAGCACTCCTGCCTGTGTCCGCCAGTCTGTTGCCCAGCGTGGTG
TGGTGCATGAGCCTCTGTGTGCAGTGAAGACACACATCATGGACTTGCAC
ACACACACACATTGTCCAACTTGCTTGACTTCTCACACACACTGCCACAC
ACACACTGCCACACACACACACACACACACACACACACACACACACACAC
ACACTGACTCCCGCCTTCCCCCAGGCTGGTCGTGGCTGCCACCGCCGGCA
ACCTGCGTGACCCCGGCACCGTCTTGGACGTTGCCAACACAGACATTGCT
GCCGCAAAGGCGGCTGCATCCCGCGCTGCCGACGCCCTGAAGAACGCCGC
GCCCGTAAGCGCCTTGACCCGCGTGCACTCTGCCAACTCGCCCTCACGCA
CCCCCACAGGAGCTCGCACTGGGCGCCAACACGAAAGCCTCTGCCTCTCC
CAAGCCCAAGGCTCCCAAGGCGACGGAGGGCGACGCCCTCGGCTCCGCCA
CCGGCAGCACCGCCACCGCCACCACCGGCAGCGCCACCACCACCACTGGC
ACCGCCACCACCGCCACTACCGCAGACGTCGCCACGGCGACGGCCGCCAA
CCAGAAGGCACAGGACGAGCTCACGGCGGCCAAGGCTGCCACCAAGGCCG
CGGAGGACGCGGTGAAGGCCGCTGAGGCCAAGGTGACGGCGGCGCAGGAC
TGCCTGAAGACGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10311:1851..2814+

>mRNA_S-firma_F_contig10311.460.1 ID=mRNA_S-firma_F_contig10311.460.1|Name=mRNA_S-firma_F_contig10311.460.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=984bp|location=Sequence derived from alignment at S-firma_F_contig10311:1851..2814+ (Sphaerotrichia firma ET2_F female)
CTTAGTCGTCGGGCTCGCCCCTCCTTGTTTAACATGCGGACCATCGCCGT
GCTTGCAGTCTTAGTCGTCGGGCTCGCCCCTCCTTGTTTAACATGCGGAC
CATCGCCGTGCTTGCAGTGCTGGTCGTGGCTGCCACCGCCGGCAACCTGC
GTGACCCCGGCACCGTCTTGGACGTTGCCAACACAGACATTGCTGCCGCA
AAGGCGGCTGCATCCCGCGCTGCCGACGCCCTGAAGAACGCCGCGCCCGC
TGGTCGTGGCTGCCACCGCCGGCAACCTGCGTGACCCCGGCACCGTCTTG
GACGTTGCCAACACAGACATTGCTGCCGCAAAGGCGGCTGCATCCCGCGC
TGCCGACGCCCTGAAGAACGCCGCGCCCGAGCTCGCACTGGGCGCCAACA
CGAAAGCCTCTGCCTCTCCCAAGCCCAAGGCTCCCAAGGCGACGGAGGGC
GACGCCCTCGGCTCCGCCACCGGCAGCACCGCCACCGCCACCACCGGCAG
CGCCACCACCACCACTGGCACCGCCACCACCGCCACTACCGCAGACGTCG
CCACGGCGACGGCCGCCAACCAGAAGGCACAGGACGAGCTCACGGCGGCC
AAGGCTGCCACCAAGGCCGCGGAGGACGCGGTGAAGGCCGCTGAGGCCAA
GGTGACGGCGGCGCAGGACTGCCTGAAGACGGAGCTCGCACTGGGCGCCA
ACACGAAAGCCTCTGCCTCTCCCAAGCCCAAGGCTCCCAAGGCGACGGAG
GGCGACGCCCTCGGCTCCGCCACCGGCAGCACCGCCACCGCCACCACCGG
CAGCGCCACCACCACCACTGGCACCGCCACCACCGCCACTACCGCAGACG
TCGCCACGGCGACGGCCGCCAACCAGAAGGCACAGGACGAGCTCACGGCG
GCCAAGGCTGCCACCAAGGCCGCGGAGGACGCGGTGAAGGCCGCTGAGGC
CAAGGTGACGGCGGCGCAGGACTGCCTGAAGACG
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