mRNA_S-firma_F_contig10306.455.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10306.455.1
Unique NamemRNA_S-firma_F_contig10306.455.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A8J5XHL4_DIALT (GPS domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHL4_DIALT)

HSP 1 Score: 72.8 bits (177), Expect = 9.750e-13
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   46 PSVTLRANSLSPGETYTFRLSATSAD-AQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGYIAV 303
            PS+  R  +L PG  YTF L+ T  D A VGS S   ++N  P GG +A  P+ G  LST FE+ A GW+D+ EDLPL Y FGY A 
Sbjct: 2380 PSLGFRTGALRPGALYTFELTVTGGDVAAVGSVSA--LMNRPPFGGVLAVAPSAGEALSTVFELRADGWTDELEDLPLEYSFGYAAA 2464          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A7S1GR23_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GR23_HEMAN)

HSP 1 Score: 69.3 bits (168), Expect = 1.280e-11
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   25 FASVLTLPSVTLRANSLSPGETYTFRLSATSADAQVGSAS---TSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGYIAV 303
             ++ LT  S+ +RA+ L+PG +YTFRL+AT     +GS S    SF  N  P GG  + +P  G  LST + +SA GW+DD EDLPL Y F + + 
Sbjct:  167 LSTTLTGTSIVIRADKLTPGISYTFRLTAT----YLGSESWGEVSFKTNQPPLGGSFSVYPMNGTSLSTSYTLSALGWTDDTEDLPLSYLFSHSSA 258          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A5A8C2U3_CAFRO (GPS domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C2U3_CAFRO)

HSP 1 Score: 65.9 bits (159), Expect = 2.620e-10
Identity = 41/95 (43.16%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   25 FASVLTLPSVTLRANSLSPGETYTFRLSATSADAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFG-YIAVP 306
            FA+  +   VTL    L  G +  F+L+ T A  Q GSA+     N  P  GFV A P  G  L+T F + A  W+D+AEDLPL Y FG Y A P
Sbjct:  338 FATSTSAARVTLSPGVLPEGASLVFKLTVTDATGQAGSATVQLRTNEPPYAGFVQASPEAGTVLATSFTLQASQWTDNAEDLPLSYLFGFYRATP 432          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A7S3HB63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HB63_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.840e-10
Identity = 43/93 (46.24%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   25 FASVLTLPSVTLRANSLSPGETYTFRLSAT---SADAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGY 294
            FA  L +P      N+  PG T TFRL A      +     +  +  VN APSGG V   PT G  LST F VS  GW+DDAED PL YQF Y
Sbjct: 1105 FAYSLLVPG-----NTFVPGSTVTFRLRANFGGDINRYAAYSEVNIKVNAAPSGGSVDVTPTSGSALSTSFVVSTAGWTDDAEDFPLSYQFQY 1192          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A5A8DPK7_CAFRO (GPS domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DPK7_CAFRO)

HSP 1 Score: 65.1 bits (157), Expect = 4.930e-10
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   25 FASVLTLPSVTLRANSLSPGETYTFRLSATSADAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGY 294
            FA+  +   VTL    L  G +  F+L+ T A  Q GSA+     N  P  GFV A P  G  L+T F + A  W+D+AEDLPL Y FG+
Sbjct: 2218 FATSTSAARVTLSPGVLPEGASLVFKLTVTDATGQAGSATVQLRTNEPPYAGFVQASPEAGTVLATSFTLQASQWTDNAEDLPLSYLFGF 2307          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A7S3HG79_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG79_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.710e-9
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   79 PGETYTFRLSATSA---DAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGY 294
            PG + TFRL A  A   +     +  +  VN APSGG V   P  G  LSTPF +S  GW+DDAED PL YQF Y
Sbjct:   70 PGSSVTFRLKANFAGDNNLYAAFSEINIKVNAAPSGGSVDVNPPSGSALSTPFVLSTAGWTDDAEDFPLSYQFQY 144          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A7D9LCW6_PARCT (REJ domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LCW6_PARCT)

HSP 1 Score: 62.8 bits (151), Expect = 3.070e-9
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   28 ASVLTLPSVTLRANSLSPGETYTFRLSATSADAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAG-GWSDDAEDLPLLYQFGYIAVPEGD 315
            A V+  PS+ +  N L  G TY F+L+A  +D+    A      N APS G +   P  G   +T F ++A  GW DDA+DLP++YQFGY     G+
Sbjct:  800 AKVVASPSLVIAKNKLEDGVTYKFKLTAEHSDSS-SFADIEITTNAAPSQGTLEIEPASGFFGNTTFTITAAEGWDDDADDLPMMYQFGYYIQDSGE 895          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A7S1GCK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCK9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.270e-9
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    7 GVADD-PFASVLTLPSVTLRANSLSPGETYTFRLSATSADAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGY 294
            GV +D  F S      +   AN   PG TYTFRL  TS D     +    ++N  PS G++A  P  G+   + F++SA  W+DDA+DLPL+Y+F Y
Sbjct:  403 GVTNDIAFVSPANRMLIKTAANIFVPGATYTFRLD-TSDDNGQSFSELEVLINEPPSSGYIAVEPQSGIAAVSNFQISAELWTDDADDLPLVYRFSY 498          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: F0Y8X7_AURAN (REJ domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8X7_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-9
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   49 SVTLRANSLSPGETYTFRLSATSADAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFG 291
            S+ L A +L+PG +Y F L +       G+A+     N  P  G +AA P+ GV L+TPF  +A GW+DDA DLPL Y FG
Sbjct:  821 SLALAAGALAPGASYAFTLRS-----GAGAATVRITTNAPPFAGTLAASPSAGVALATPFFFAARGWTDDAGDLPLSYGFG 896          
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-8
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   25 FASVLTLPSVTLRANSLSPGETYTFRLSATSADAQVGSASTSFVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGYI 297
            F++ +   ++ +R  +L  G+ Y+F LSAT A   VG A  SF  N  PSGG + +          P  +   GW+DD +DLPL Y FGYI
Sbjct:  364 FSTPVNARTLIIRKGALGAGQVYSFSLSATDASGLVGYAEFSFETNAPPSGGHLKSDRLSATAGVNPVVLQTLGWTDDIDDLPLTYSFGYI 454          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10306.455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5XHL4_DIALT9.750e-1349.43GPS domain-containing protein n=1 Tax=Diacronema l... [more]
A0A7S1GR23_HEMAN1.280e-1143.75Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5A8C2U3_CAFRO2.620e-1043.16GPS domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A7S3HB63_9STRA4.840e-1046.24Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A5A8DPK7_CAFRO4.930e-1042.22GPS domain-containing protein n=4 Tax=Cafeteria ro... [more]
A0A7S3HG79_9STRA1.710e-949.33Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7D9LCW6_PARCT3.070e-939.18REJ domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7S1GCK9_9STRA4.270e-940.21Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F0Y8X7_AURAN4.310e-944.44REJ domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A6H5JCS7_9PHAE1.080e-838.46REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10306contigS-firma_F_contig10306:2630..2944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog36331.EPrPI00000017420
Preferred nameATG7
PFAMsATG7_N,ThiF
Max annot lvl2759|Eukaryota
KEGG rclassRC00074
KEGG koko:K01493,ko:K08337
KEGG ReactionR01663
KEGG Pathwayko00240,ko01100,ko04136,ko04138,ko04140,ko04216,map00240,map01100,map04136,map04138,map04140,map04216
KEGG ModuleM00429
GOsGO:0000045,GO:0000407,GO:0000422,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008641,GO:0009056,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009607,GO:0009620,GO:0009987,GO:0009991,GO:0010150,GO:0016020,GO:0016043,GO:0016236,GO:0016237,GO:0016740,GO:0016874,GO:0016877,GO:0018410,GO:0019538,GO:0019778,GO:0019779,GO:0022411,GO:0022607,GO:0031667,GO:0031668,GO:0031669,GO:0032258,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034645,GO:0034727,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043562,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050832,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0061726,GO:0061919,GO:0070647,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0090693,GO:0098542,GO:0099402,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1905037
Evalue3.2e-11
EggNOG OGsCOG0476@1|root,KOG2337@2759|Eukaryota
EC3.5.4.12
DescriptionAtg12 activating enzyme activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko02044,ko03029,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.472815-CDS-S-firma_F_contig10306:2629..29441622815562.472815-CDS-S-firma_F_contig10306:2629..2944Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10306 2630..2944 -
1696949417.6899781-CDS-S-firma_F_contig10306:2629..29441696949417.6899781-CDS-S-firma_F_contig10306:2629..2944Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10306 2630..2944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10306.455.1prot_S-firma_F_contig10306.455.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10306 2630..2944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10306.455.1

>prot_S-firma_F_contig10306.455.1 ID=prot_S-firma_F_contig10306.455.1|Name=mRNA_S-firma_F_contig10306.455.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=105bp
VSGVADDPFASVLTLPSVTLRANSLSPGETYTFRLSATSADAQVGSASTS
FVVNVAPSGGFVAAFPTVGVQLSTPFEVSAGGWSDDAEDLPLLYQFGYIA
VPEGD
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mRNA from alignment at S-firma_F_contig10306:2630..2944-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10306.455.1 ID=mRNA_S-firma_F_contig10306.455.1|Name=mRNA_S-firma_F_contig10306.455.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=315bp|location=Sequence derived from alignment at S-firma_F_contig10306:2630..2944- (Sphaerotrichia firma ET2_F female)
GTGTCGGGTGTGGCGGACGACCCCTTTGCGTCCGTCCTCACCCTCCCCTC CGTCACCCTCCGTGCCAACTCCCTGAGCCCCGGCGAGACGTACACCTTCC GCCTCTCCGCGACGTCCGCCGACGCCCAAGTCGGCTCCGCGTCGACAAGC TTTGTTGTGAACGTGGCGCCCTCTGGCGGGTTTGTGGCGGCCTTCCCCAC CGTTGGCGTCCAGTTATCGACGCCGTTTGAGGTGTCCGCCGGCGGCTGGT CCGACGACGCCGAGGACCTGCCCCTGCTGTACCAGTTTGGGTACATTGCG GTCCCGGAGGGCGAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10306:2630..2944-

>mRNA_S-firma_F_contig10306.455.1 ID=mRNA_S-firma_F_contig10306.455.1|Name=mRNA_S-firma_F_contig10306.455.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=630bp|location=Sequence derived from alignment at S-firma_F_contig10306:2630..2944- (Sphaerotrichia firma ET2_F female)
GTGTCGGGTGTGGCGGACGACCCCTTTGCGTCCGTCCTCACCCTCCCCTC
CGTCACCCTCCGTGCCAACTCCCTGAGCCCCGGCGAGACGTACACCTTCC
GCCTCTCCGCGACGTCCGCCGACGCCCAAGTCGGCTCCGCGTCGACAAGC
TTTGTTGTGAACGTGGCGCCCTCTGGCGGGTTTGTGGCGGCCTTCCCCAC
CGTTGGCGTCCAGTTATCGACGCCGTTTGAGGTGTCCGCCGGCGGCTGGT
CCGACGACGCCGAGGACCTGCCCCTGCTGTACCAGTTTGGGTACATTGCG
GTCCCGGAGGGCGACGTGTCGGGTGTGGCGGACGACCCCTTTGCGTCCGT
CCTCACCCTCCCCTCCGTCACCCTCCGTGCCAACTCCCTGAGCCCCGGCG
AGACGTACACCTTCCGCCTCTCCGCGACGTCCGCCGACGCCCAAGTCGGC
TCCGCGTCGACAAGCTTTGTTGTGAACGTGGCGCCCTCTGGCGGGTTTGT
GGCGGCCTTCCCCACCGTTGGCGTCCAGTTATCGACGCCGTTTGAGGTGT
CCGCCGGCGGCTGGTCCGACGACGCCGAGGACCTGCCCCTGCTGTACCAG
TTTGGGTACATTGCGGTCCCGGAGGGCGAC
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