mRNA_S-firma_F_contig10306.454.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10306.454.1
Unique NamemRNA_S-firma_F_contig10306.454.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: A8DVA6_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A8DVA6_NEMVE)

HSP 1 Score: 90.5 bits (223), Expect = 3.310e-21
Identity = 51/113 (45.13%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTAA--GACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADCVGPAEDTEAC 333
            +GEW  +S CT  C  GT  R R C + A   G     GPA +T  CN  PC V  DG Y  W A+  C   CSGG        + R RTC NPAP+ GGADC GPA  T +C
Sbjct:    9 YGEWGAWSNCTELCSGGTQLRMRTCDNPAPAYGGADCPGPANKTRSCNEHPCPV--DGQYGEWGAWSNCTELCSGGT-------QLRMRTCDNPAPAYGGADCPGPANKTRSC 112          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: A0A6P4ZEF7_BRABE (coadhesin-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZEF7_BRABE)

HSP 1 Score: 95.5 bits (236), Expect = 8.600e-21
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTAA--GACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADCVGPAEDTEAC 333
            + +W P+S CTV+CGNGT TR R C++ A   G     GPA ET  C+TE  +  +DG +S W A+  C   C  GV     G  TR RTC+NPAP  GGADC GPA++T+AC
Sbjct:  315 WSDWGPWSTCTVTCGNGTETRDRTCTNPAPENGGTDCDGPAQETQACDTEV-SCPVDGGWSDWFAWSGCSVTC--GV-----GTETRDRTCTNPAPENGGADCDGPAQETQAC 419          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: A0A1S3JLN6_LINUN (uncharacterized protein LOC106174328 isoform X1 n=9 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JLN6_LINUN)

HSP 1 Score: 94.7 bits (234), Expect = 2.560e-20
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTA----AGACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADCVGPAEDTEAC 333
            + +WS +S CTV+C  GT  RTR C++ A       C+GLGPATET  CNT+ C V  +G  + WS++G C   C GG        ++R+RTC+NP P  GGADCVG   + + C
Sbjct: 2677 YSQWSSWSTCTVTCEGGTQERTRSCTNPAPANNGSDCSGLGPATETQQCNTQGCPV--NGGLTNWSSWGTCNVTCGGGS-------QSRTRTCTNPVPQNGGADCVGDRLELQQC 2782          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: UPI001604472F (uncharacterized protein LOC118410979 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001604472F)

HSP 1 Score: 93.6 bits (231), Expect = 6.160e-20
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTAA--GACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADCVGPAEDTEAC 333
            + +W  +S C+V+CG GT TR + C++ A   G    +GPA +T  C+T   +  +DG +S W A+ +C   C  GV     G +TR RTC+NPAP+ GGADCVGPAEDT+AC
Sbjct:  287 WSDWGAWSDCSVTCGVGTQTRDKTCTNPAPANGGADCVGPAEDTQQCDTGV-SCPVDGGWSDWGAWSDCSVTC--GV-----GTQTRDRTCTNPAPANGGADCVGPAEDTQAC 391          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: A0A7S1GCK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCK9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.350e-20
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTAAG----ACA----GLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADCV 306
            + EW+ ++ C VSCG GT TR R C++ A       C     G+GP++E   CNT+ C VV+DG+Y+ WS +GEC   C G   G   G R R R C+NPAPS  GA CV
Sbjct:  662 YTEWTEWTDCDVSCGGGTQTRERSCTNPAPANGGVECDDEDDGIGPSSEERACNTDACVVVVDGDYTQWSEWGECDATC-GATWGVAVGARRRLRACTNPAPSRDGATCV 770          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: UPI000C038B79 (uncharacterized protein LOC111334195 isoform X1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C038B79)

HSP 1 Score: 92.8 bits (229), Expect = 1.190e-19
Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTA----AGACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADC--VGPAEDTEAC 333
            + EWS FSPC+VSCGNGTM RTR CS  +    A  C+ +G + E   C  + C   ++G YS WS FG C   C GG+       + R+RTCSNP P  GG +C  +G A + E C
Sbjct:  245 YSEWSDFSPCSVSCGNGTMKRTRNCSQPSPINRALNCSSIGHSEEAKSCFLQECP--LNGGYSQWSVFGNCSKTCGGGI-------KKRNRTCSNPEPELGGRNCTSLGLAIEVEEC 352          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: A0A2B4S1V9_STYPI (Hemicentin-1 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S1V9_STYPI)

HSP 1 Score: 92.8 bits (229), Expect = 1.190e-19
Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTA----AGACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADC--VGPAEDTEAC 333
            + EWS FSPC+VSCGNGTM RTR CS  +    A  C+ +G + E   C  + C   ++G YS WS FG C   C GG+       + R+RTCSNP P  GG +C  +G A + E C
Sbjct:  125 YSEWSDFSPCSVSCGNGTMKRTRNCSQPSPINRALNCSSIGHSEEAKSCFLQECP--LNGGYSQWSVFGNCSKTCGGGI-------KKRNRTCSNPEPELGGRNCTSLGLAIEVEEC 232          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: A0A1S3ILR9_LINUN (coadhesin-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3ILR9_LINUN)

HSP 1 Score: 88.6 bits (218), Expect = 2.660e-19
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSSTA----AGACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADCVGPAEDTEAC 333
            + +WS +  C+ +CG G+ TRTR C++         C+GLGP +ET  CNT+ C   I+G ++ WS++G C   C GG        ++R+RTC+NP P  GGADCVG   + + C
Sbjct:   98 YSQWSTWGTCSSTCGGGSQTRTRTCTNPTPAFNGNDCSGLGPNSETQQCNTQGCP--INGGFTNWSSWGTCNVTCGGGS-------QSRTRTCTNPVPQNGGADCVGIILELQQC 203          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: UPI0009E39337 (coadhesin-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E39337)

HSP 1 Score: 91.7 bits (226), Expect = 2.740e-19
Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 FGEWSPFSPCTVSCGNGTMTRTRECSST----AAGACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADC--VGPAEDTEAC 333
            + EWS +S C+V+CG G   R+R C++         C  LGPA+E++ CN +PC   IDGNY+ WSA+ EC   C GG+       +TR+R C+NP P  GG DC  +GP   T+ C
Sbjct:  260 YTEWSKWSDCSVTCGGGKRKRSRTCTNPHPKHGGKNCDDLGPASESLECNPDPCP--IDGNYTEWSAWSECNVTCDGGL-------QTRTRQCTNPPPQYGGKDCEELGPTNATQEC 367          
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Match: UPI00148A60C1 (uncharacterized protein LOC105341114 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A60C1)

HSP 1 Score: 91.7 bits (226), Expect = 2.890e-19
Identity = 55/115 (47.83%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    4 GEWSPF---SPCTVSCGNGTMTRTRECSSTAA--GACAGLGPATETVFCNTEPCTVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGADCVGPAEDTEAC 333
            G WS F   + C+VSCG G  TR+R CS+ A   G     G +T+T  CNT PC V  DG +SAW A+G C   C GG        R R RTC+NPAPS GGA+C+G    TE+C
Sbjct:  455 GGWSHFGHYAACSVSCGGGATTRSRTCSNPAPKWGGDDCSGSSTQTSSCNTNPCPV--DGLWSAWGAWGHCSKTCGGGT-------RERHRTCTNPAPSHGGANCIGSLTVTESC 560          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10306.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A8DVA6_NEMVE3.310e-2145.13Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A6P4ZEF7_BRABE8.600e-2148.67coadhesin-like n=1 Tax=Branchiostoma belcheri TaxI... [more]
A0A1S3JLN6_LINUN2.560e-2044.35uncharacterized protein LOC106174328 isoform X1 n=... [more]
UPI001604472F6.160e-2046.02uncharacterized protein LOC118410979 n=1 Tax=Branc... [more]
A0A7S1GCK9_9STRA6.350e-2045.45Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI000C038B791.190e-1944.44uncharacterized protein LOC111334195 isoform X1 n=... [more]
A0A2B4S1V9_STYPI1.190e-1944.44Hemicentin-1 n=1 Tax=Stylophora pistillata TaxID=5... [more]
A0A1S3ILR9_LINUN2.660e-1940.00coadhesin-like n=1 Tax=Lingula unguis TaxID=7574 R... [more]
UPI0009E393372.740e-1942.74coadhesin-like n=1 Tax=Orbicella faveolata TaxID=4... [more]
UPI00148A60C12.890e-1947.83uncharacterized protein LOC105341114 n=1 Tax=Crass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10306contigS-firma_F_contig10306:1922..2257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog27923.ML460822a-PA
PFAMsTSP_1
Max annot lvl2759|Eukaryota
Evalue1.78e-23
EggNOG OGsKOG4475@1|root,KOG4475@2759|Eukaryota
Descriptioncoreceptor activity involved in Wnt signaling pathway, planar cell polarity pathway
COG categoryU
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.4259894-CDS-S-firma_F_contig10306:1921..22571622815562.4259894-CDS-S-firma_F_contig10306:1921..2257Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10306 1922..2257 -
1696949417.6747146-CDS-S-firma_F_contig10306:1921..22571696949417.6747146-CDS-S-firma_F_contig10306:1921..2257Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10306 1922..2257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10306.454.1prot_S-firma_F_contig10306.454.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10306 1922..2257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10306.454.1

>prot_S-firma_F_contig10306.454.1 ID=prot_S-firma_F_contig10306.454.1|Name=mRNA_S-firma_F_contig10306.454.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
FGEWSPFSPCTVSCGNGTMTRTRECSSTAAGACAGLGPATETVFCNTEPC
TVVIDGNYSAWSAFGECVPDCSGGVVGEQAGVRTRSRTCSNPAPSAGGAD
CVGPAEDTEACV
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mRNA from alignment at S-firma_F_contig10306:1922..2257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10306.454.1 ID=mRNA_S-firma_F_contig10306.454.1|Name=mRNA_S-firma_F_contig10306.454.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10306:1922..2257- (Sphaerotrichia firma ET2_F female)
TTTGGAGAATGGTCTCCGTTCTCGCCGTGCACCGTGTCCTGCGGCAACGG CACCATGACGCGGACCCGGGAGTGCTCGTCGACGGCGGCGGGCGCGTGTG CCGGCCTGGGGCCGGCCACGGAGACGGTGTTTTGCAACACGGAGCCGTGC ACGGTCGTCATTGACGGCAACTACTCCGCGTGGTCGGCGTTTGGGGAGTG CGTGCCGGATTGCTCAGGTGGTGTGGTTGGGGAGCAGGCCGGCGTCCGCA CCCGTTCCCGGACGTGCTCCAACCCGGCCCCCAGCGCCGGTGGCGCAGAC TGCGTGGGGCCCGCGGAGGACACGGAGGCGTGCGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10306:1922..2257-

>mRNA_S-firma_F_contig10306.454.1 ID=mRNA_S-firma_F_contig10306.454.1|Name=mRNA_S-firma_F_contig10306.454.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10306:1922..2257- (Sphaerotrichia firma ET2_F female)
TTTGGAGAATGGTCTCCGTTCTCGCCGTGCACCGTGTCCTGCGGCAACGG
CACCATGACGCGGACCCGGGAGTGCTCGTCGACGGCGGCGGGCGCGTGTG
CCGGCCTGGGGCCGGCCACGGAGACGGTGTTTTGCAACACGGAGCCGTGC
ACGGTCGTCATTGACGGCAACTACTCCGCGTGGTCGGCGTTTGGGGAGTG
CGTGCCGGATTGCTCAGGTGGTGTGGTTGGGGAGCAGGCCGGCGTCCGCA
CCCGTTCCCGGACGTGCTCCAACCCGGCCCCCAGCGCCGGTGGCGCAGAC
TGCGTGGGGCCCGCGGAGGACACGGAGGCGTGCGTGTTTGGAGAATGGTC
TCCGTTCTCGCCGTGCACCGTGTCCTGCGGCAACGGCACCATGACGCGGA
CCCGGGAGTGCTCGTCGACGGCGGCGGGCGCGTGTGCCGGCCTGGGGCCG
GCCACGGAGACGGTGTTTTGCAACACGGAGCCGTGCACGGTCGTCATTGA
CGGCAACTACTCCGCGTGGTCGGCGTTTGGGGAGTGCGTGCCGGATTGCT
CAGGTGGTGTGGTTGGGGAGCAGGCCGGCGTCCGCACCCGTTCCCGGACG
TGCTCCAACCCGGCCCCCAGCGCCGGTGGCGCAGACTGCGTGGGGCCCGC
GGAGGACACGGAGGCGTGCGTG
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