mRNA_S-firma_F_contig103.444.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig103.444.1
Unique NamemRNA_S-firma_F_contig103.444.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig103.444.1 vs. uniprot
Match: D8LDQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.030e-18
Identity = 80/149 (53.69%), Postives = 92/149 (61.74%), Query Frame = 1 
Query:    1 GGPGIGSASGADVSMAQAAAAGRDALYAEDVDMGEAMPWSFSPTSSGFSG-APERAPRA---GAAAATARSNPTG--AAILASSXXXXXXXXXXXXXXXXXXXXXXXXSN------SAPAWGMDSPXXXXXXXXXXXSSSPFAPEKWMA 411
            GG  +G  +G D SM QAAAAG DALYAEDVDMGEAMPWSF+P S+GF+G A   AP A    A A  +RS PTG  A+++ S+  XXXXXXX        XXXXXXX        +APAWGMDSP             SPF+PEKW A
Sbjct:    6 GGASMGGDNGGDASMGQAAAAGLDALYAEDVDMGEAMPWSFAPDSNGFAGGAASNAPSAQDLSAPATASRSTPTGPVASLVLSAPAXXXXXXXATAESNDAXXXXXXXXXXXXXXXTAPAWGMDSP-------------SPFSPEKWTA 141
[Close]
BLAST of mRNA_S-firma_F_contig103.444.1 vs. uniprot
Match: A0A6H5L6G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.610e-12
Identity = 63/146 (43.15%), Postives = 72/146 (49.32%), Query Frame = 1 
Query:   13 IGSASGADVSMAQAAAA--GRDALYAEDVDMGEAMPWSFSPTSSGFS-GAPERAPRA---GAAAATARSNPTG-------AAILASSXXXXXXXXXXXXXXXXXXXXXXXXSNSAPAWGMDSPXXXXXXXXXXXSSSPFAPEKWMA 411
            +G  +G D SM QAAAA  G DALYAEDVDMGEAMPWSF+P SSGF+ GA   AP A    A     RS PTG       +A  A++                        S +APAWGMDSP             S F+ EKW A
Sbjct:  869 MGGDNGGDASMGQAAAAAAGLDALYAEDVDMGEAMPWSFAPDSSGFAVGAASNAPSAQDLSAPIMALRSAPTGPVASLVLSAPAAAAGATPATGEPNDASPNTGASASTQSSGTAPAWGMDSP-------------SLFSAEKWTA 1001
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig103.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDQ7_ECTSI3.030e-1853.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6G4_9PHAE2.610e-1243.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig103contigS-firma_F_contig103:55931..57185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001570.1
Exons3
Model size459
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig103.444.1prot_S-firma_F_contig103.444.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig103 55973..57140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.4935942-UTR-S-firma_F_contig103:55930..559721622815560.4935942-UTR-S-firma_F_contig103:55930..55972Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig103 55931..55972 +
1696949416.1551988-UTR-S-firma_F_contig103:55930..559721696949416.1551988-UTR-S-firma_F_contig103:55930..55972Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig103 55931..55972 +
1622815560.5502105-UTR-S-firma_F_contig103:57140..571851622815560.5502105-UTR-S-firma_F_contig103:57140..57185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig103 57141..57185 +
1696949416.186797-UTR-S-firma_F_contig103:57140..571851696949416.186797-UTR-S-firma_F_contig103:57140..57185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig103 57141..57185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.5106027-CDS-S-firma_F_contig103:55972..559761622815560.5106027-CDS-S-firma_F_contig103:55972..55976Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig103 55973..55976 +
1696949416.1632833-CDS-S-firma_F_contig103:55972..559761696949416.1632833-CDS-S-firma_F_contig103:55972..55976Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig103 55973..55976 +
1622815560.522871-CDS-S-firma_F_contig103:56319..564481622815560.522871-CDS-S-firma_F_contig103:56319..56448Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig103 56320..56448 +
1696949416.1709197-CDS-S-firma_F_contig103:56319..564481696949416.1709197-CDS-S-firma_F_contig103:56319..56448Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig103 56320..56448 +
1622815560.5365465-CDS-S-firma_F_contig103:56901..571401622815560.5365465-CDS-S-firma_F_contig103:56901..57140Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig103 56902..57140 +
1696949416.178884-CDS-S-firma_F_contig103:56901..571401696949416.178884-CDS-S-firma_F_contig103:56901..57140Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig103 56902..57140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig103.444.1

>prot_S-firma_F_contig103.444.1 ID=prot_S-firma_F_contig103.444.1|Name=mRNA_S-firma_F_contig103.444.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=124bp
MAQAAAAGRDALYAEDVDMGEAMPWSFSPTSSGFSGAPERAPRAGAAAAT
ARSNPTGAAILASSSADSDPSNPAAAAASAASAASAGSSNSAPAWGMDSP
AGSAVSASSTPSSSPFAPEKWMA*
back to top

mRNA from alignment at S-firma_F_contig103:55931..57185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig103.444.1 ID=mRNA_S-firma_F_contig103.444.1|Name=mRNA_S-firma_F_contig103.444.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1255bp|location=Sequence derived from alignment at S-firma_F_contig103:55931..57185+ (Sphaerotrichia firma ET2_F female)
GGTGGCCCTGGGATCGGCAGCGCCAGCGGCGCTGATGTCTCGATGGGTGA
GTTTTTTTCCCCCGCAAGCTTTGCGGCCACCGCCTCTGCCGCCGTCAGGC
TGGGTGTTGTGCATGCTGTTGTGCGGAAATTCGCGGCGCGTGTGCGGAAT
CACGACGATGTGGTCAGGAAGTAGGCTTGCGGTTCACATGCCGCATGGCC
TTCTTGGTTCCCGATTCTTGTAAAGTACAGGCGTCAACTATGATAGGAGA
AGCTTGCTGCCTTTTGTCGATGCCGTCCGCAGAGCATGTCGCGCTCAAGG
AGACCCCCCCCCCCGCCGCCGCGCGCGCGCGTCTCGTTTGTGTTGTGTTG
TGTTGTGTTGTGTTGTGTTGTCATCGCGACGCCGAGCAGCACAAGCCGCC
GCCGCCGGTCGAGACGCGCTCTACGCGGAAGACGTAGACATGGGCGAGGC
CATGCCGTGGTCTTTCTCGCCTACCTCCAGCGGCTTCTCAGGTGCGCCAG
AAAGGGCACCGCGGGCTGGTGTTGGGGGGGGAGGGGGGGGTGTTTTTTTA
CTCGCTGCCTTCGCCGTCTTCTGTTTGTGAGGGAATCAAGGGTGGAAGTT
CACATCGATCGGCGTGGCATTTGTGCTAATTGATTTTTTTGTTGCACTTA
TTTATGCTTTTTTATTTTGTTTGTTGCACTTATTCTTAAGATTGACTGCG
TTGTTCTTCGGGGGCTGTTCCCGTTTCTTGCGTTGGTTGTGGGTTGCCCA
AGCTCTCCGTTGACCGTGGTCCTTCTCGAACAGATTGGCGAGGATGAGGC
TCCAACTCCGGGGCCTTTTTTCCCTTGGTAAACCACCGTCGCATGCATGC
CCTCCTTCACTCTATAAGTCAATACGTGCCGAACTCGCCGCATCCAAATG
AGCTCTTCTTTCCGTCGTTTCGATACCACCAATCGACCTCACACACACGC
AAAAAAAAAAAAAAAAAACAGGTGCGGCGGCCGCCACCGCTCGCTCAAAT
CCCACCGGAGCAGCAATCCTCGCGTCGTCGTCCGCGGACAGCGATCCTTC
TAACCCCGCGGCGGCTGCAGCGTCGGCGGCGTCGGCGGCGTCGGCGGGAT
CGTCCAACTCGGCCCCCGCGTGGGGCATGGACTCTCCGGCGGGTTCGGCG
GTGTCGGCCTCAAGCACCCCGTCGTCGTCGCCGTTCGCGCCGGAGAAGTG
GATGGCGTAGTACAGCAGTCAGTGGTGCCTGCCTGGGTGAAACGGAAGGC
CGTGT
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig103:55931..57185+

>mRNA_S-firma_F_contig103.444.1 ID=mRNA_S-firma_F_contig103.444.1|Name=mRNA_S-firma_F_contig103.444.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=744bp|location=Sequence derived from alignment at S-firma_F_contig103:55931..57185+ (Sphaerotrichia firma ET2_F female)
ATGGATGGCACAAGCCGCCGCCGCCGGTCGAGACGCGCTCTACGCGGAAG
ACGTAGACATGGGCGAGGCCATGCCGTGGTCTTTCTCGCCTACCTCCAGC
GGCTTCTCAGGTGCGCCAGAAAGGGCACCGCGGGCTGCACAAGCCGCCGC
CGCCGGTCGAGACGCGCTCTACGCGGAAGACGTAGACATGGGCGAGGCCA
TGCCGTGGTCTTTCTCGCCTACCTCCAGCGGCTTCTCAGGTGCGCCAGAA
AGGGCACCGCGGGCTGGTGCGGCGGCCGCCACCGCTCGCTCAAATCCCAC
CGGAGCAGCAATCCTCGCGTCGTCGTCCGCGGACAGCGATCCTTCTAACC
CCGCGGCGGCTGCAGCGTCGGCGGCGTCGGCGGCGTCGGCGGGATCGTCC
AACTCGGCCCCCGCGTGGGGCATGGACTCTCCGGCGGGTTCGGCGGTGTC
GGCCTCAAGCACCCCGTCGTCGTCGCCGTTCGCGCCGGAGAAGTGGATGG
CGTAGGTGCGGCGGCCGCCACCGCTCGCTCAAATCCCACCGGAGCAGCAA
TCCTCGCGTCGTCGTCCGCGGACAGCGATCCTTCTAACCCCGCGGCGGCT
GCAGCGTCGGCGGCGTCGGCGGCGTCGGCGGGATCGTCCAACTCGGCCCC
CGCGTGGGGCATGGACTCTCCGGCGGGTTCGGCGGTGTCGGCCTCAAGCA
CCCCGTCGTCGTCGCCGTTCGCGCCGGAGAAGTGGATGGCGTAG
back to top