mRNA_S-firma_F_contig10299.437.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10299.437.1
Unique NamemRNA_S-firma_F_contig10299.437.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10299.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10299contigS-firma_F_contig10299:2..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size548
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.268893-UTR-S-firma_F_contig10299:1..1861622815560.268893-UTR-S-firma_F_contig10299:1..186Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10299 2..186 +
1696949415.966038-UTR-S-firma_F_contig10299:1..1861696949415.966038-UTR-S-firma_F_contig10299:1..186Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10299 2..186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.2825441-CDS-S-firma_F_contig10299:186..5491622815560.2825441-CDS-S-firma_F_contig10299:186..549Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10299 187..549 +
1696949415.978915-CDS-S-firma_F_contig10299:186..5491696949415.978915-CDS-S-firma_F_contig10299:186..549Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10299 187..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10299.437.1prot_S-firma_F_contig10299.437.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10299 187..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10299.437.1

>prot_S-firma_F_contig10299.437.1 ID=prot_S-firma_F_contig10299.437.1|Name=mRNA_S-firma_F_contig10299.437.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=121bp
MVDERANGLAERLYLCGVPGIEDEVQQSFAFASQCFSRRGFVFLGLRLSI
SSKHVWRWPLPLCDCQRGIERPNKSKEGVADADLALRGVGGWVVGGCGTQ
WNSVSLAVSQSRRLLQPLLQ*
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mRNA from alignment at S-firma_F_contig10299:2..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10299.437.1 ID=mRNA_S-firma_F_contig10299.437.1|Name=mRNA_S-firma_F_contig10299.437.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=548bp|location=Sequence derived from alignment at S-firma_F_contig10299:2..549+ (Sphaerotrichia firma ET2_F female)
ATCGCTCTCTCGGAGCCTATCTCCATTGGCGAAGCCAGTAAGTTACGAAG
ACAGATACAATCAGACAAAGCTGTGTACCGTCCCCTTCACCTTTCACTGC
TCGGTTTCAGGGTACTTTCGTGGCGGACGATGTGACCACCGTCCTTGTAC
CAGAATAATGACGACATCATTGATTTGCGCAGGTCATGGTAGACGAACGC
GCCAATGGTTTGGCGGAACGCTTGTACCTCTGCGGTGTACCTGGTATCGA
AGATGAGGTCCAGCAGTCGTTCGCCTTCGCCTCGCAGTGCTTCTCTCGCC
GCGGATTTGTGTTTCTTGGCCTTCGGCTGTCCATCTCCTCGAAGCATGTT
TGGAGGTGGCCCCTTCCTCTGTGTGATTGTCAAAGAGGGATAGAGAGGCC
CAACAAAAGCAAAGAAGGTGTTGCGGATGCCGACTTGGCGCTTCGTGGCG
TTGGAGGTTGGGTGGTTGGAGGATGTGGAACGCAGTGGAACTCCGTCAGT
CTCGCAGTCTCGCAGTCTCGCCGCTTGCTTCAACCACTCCTACAGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10299:2..549+

>mRNA_S-firma_F_contig10299.437.1 ID=mRNA_S-firma_F_contig10299.437.1|Name=mRNA_S-firma_F_contig10299.437.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=726bp|location=Sequence derived from alignment at S-firma_F_contig10299:2..549+ (Sphaerotrichia firma ET2_F female)
ATGGTAGACGAACGCGCCAATGGTTTGGCGGAACGCTTGTACCTCTGCGG
TGTACCTGGTATCGAAGATGAGGTCCAGCAGTCGTTCGCCTTCGCCTCGC
AGTGCTTCTCTCGCCGCGGATTTGTGTTTCTTGGCCTTCGGCTGTCCATC
TCCTCGAAGCATGTTTGGAGGTGGCCCCTTCCTCTGTGTGATTGTCAAAG
AGGGATAGAGAGGCCCAACAAAAGCAAAGAAGGTGTTGCGGATGCCGACT
TGGCGCTTCGTGGCGTTGGAGGTTGGGTGGTTGGAGGATGTGGAACGCAG
TGGAACTCCGTCAGTCTCGCAGTCTCGCAGTCTCGCCGCTTGCTTCAACC
ACTCCTACAGTAGATGGTAGACGAACGCGCCAATGGTTTGGCGGAACGCT
TGTACCTCTGCGGTGTACCTGGTATCGAAGATGAGGTCCAGCAGTCGTTC
GCCTTCGCCTCGCAGTGCTTCTCTCGCCGCGGATTTGTGTTTCTTGGCCT
TCGGCTGTCCATCTCCTCGAAGCATGTTTGGAGGTGGCCCCTTCCTCTGT
GTGATTGTCAAAGAGGGATAGAGAGGCCCAACAAAAGCAAAGAAGGTGTT
GCGGATGCCGACTTGGCGCTTCGTGGCGTTGGAGGTTGGGTGGTTGGAGG
ATGTGGAACGCAGTGGAACTCCGTCAGTCTCGCAGTCTCGCAGTCTCGCC
GCTTGCTTCAACCACTCCTACAGTAG
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