mRNA_S-firma_F_contig10294.431.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10294.431.1
Unique NamemRNA_S-firma_F_contig10294.431.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10294.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10294contigS-firma_F_contig10294:460..1401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size943
Cds size942
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.8353846-CDS-S-firma_F_contig10294:459..14011622815559.8353846-CDS-S-firma_F_contig10294:459..1401Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10294 460..1401 +
1696949415.663751-CDS-S-firma_F_contig10294:459..14011696949415.663751-CDS-S-firma_F_contig10294:459..1401Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10294 460..1401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10294.431.1prot_S-firma_F_contig10294.431.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10294 460..1401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10294.431.1

>prot_S-firma_F_contig10294.431.1 ID=prot_S-firma_F_contig10294.431.1|Name=mRNA_S-firma_F_contig10294.431.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=314bp
SREVAISQSDGGGDGAVGYGTLRVDAFGSGRVGDGGEISRREQARAVGYA
AMAAPRQAARDVSPVVVSRGDNPPPPPPREQPARSAADADTAAAAPIGGG
GGVSSLQVAGDTGASTTRADGLPPLGSGYQHPGATSDGWGMGLPQQGGYQ
ASSMVQAPTVGVPAATAGHQQPGAAPGGWEMGQPLQGGYPVAGVPGAAAV
SSMVQTPTVGVTAATAGYTWSTAGGRSGGRFQGAGVAGSAWPTNGTAGED
TRLQPRQRQGAPAPGWHQQQQQHGWTGEWGSQTNAVGCGQQGQGPQEWPS
QQQQLTPQQQYIWG
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mRNA from alignment at S-firma_F_contig10294:460..1401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10294.431.1 ID=mRNA_S-firma_F_contig10294.431.1|Name=mRNA_S-firma_F_contig10294.431.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=942bp|location=Sequence derived from alignment at S-firma_F_contig10294:460..1401+ (Sphaerotrichia firma ET2_F female)
TCACGTGAGGTTGCCATTTCGCAATCGGACGGGGGGGGTGATGGGGCGGT
CGGGTATGGTACGTTGAGGGTGGATGCGTTCGGCAGCGGTCGTGTGGGAG
ATGGCGGTGAAATTTCTAGAAGGGAGCAGGCCCGCGCCGTAGGGTATGCG
GCAATGGCGGCACCTCGCCAGGCGGCGCGCGATGTTTCACCGGTGGTGGT
ATCCCGCGGCGACAACCCCCCTCCCCCACCCCCCAGAGAACAGCCGGCGC
GGTCGGCAGCAGACGCGGACACAGCAGCGGCCGCCCCGATCGGAGGGGGG
GGGGGCGTGAGTAGCCTGCAAGTGGCGGGAGACACGGGCGCGAGCACCAC
GCGTGCGGATGGCCTGCCGCCGCTGGGGAGCGGGTACCAGCACCCTGGAG
CGACCTCTGACGGATGGGGGATGGGACTACCGCAACAGGGGGGCTACCAG
GCGTCTAGTATGGTGCAAGCGCCGACGGTCGGAGTACCCGCGGCCACGGC
CGGGCACCAACAACCTGGAGCAGCGCCCGGCGGATGGGAGATGGGACAAC
CACTCCAAGGGGGCTACCCGGTGGCAGGGGTGCCGGGGGCCGCAGCCGTG
TCCAGTATGGTGCAAACGCCGACCGTCGGAGTAACGGCGGCCACAGCGGG
ATATACATGGTCAACGGCTGGAGGAAGGTCGGGAGGACGGTTCCAAGGCG
CGGGGGTGGCGGGGTCGGCGTGGCCGACCAACGGCACGGCAGGGGAAGAT
ACTCGGCTGCAGCCGCGGCAGCGCCAGGGGGCGCCGGCGCCCGGGTGGCA
CCAACAACAGCAGCAGCACGGATGGACGGGGGAGTGGGGGTCGCAGACGA
ACGCCGTGGGATGTGGCCAACAAGGACAAGGGCCGCAGGAGTGGCCCTCG
CAACAGCAGCAACTGACGCCGCAGCAGCAGTACATATGGGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10294:460..1401+

>mRNA_S-firma_F_contig10294.431.1 ID=mRNA_S-firma_F_contig10294.431.1|Name=mRNA_S-firma_F_contig10294.431.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1884bp|location=Sequence derived from alignment at S-firma_F_contig10294:460..1401+ (Sphaerotrichia firma ET2_F female)
TCACGTGAGGTTGCCATTTCGCAATCGGACGGGGGGGGTGATGGGGCGGT
CGGGTATGGTACGTTGAGGGTGGATGCGTTCGGCAGCGGTCGTGTGGGAG
ATGGCGGTGAAATTTCTAGAAGGGAGCAGGCCCGCGCCGTAGGGTATGCG
GCAATGGCGGCACCTCGCCAGGCGGCGCGCGATGTTTCACCGGTGGTGGT
ATCCCGCGGCGACAACCCCCCTCCCCCACCCCCCAGAGAACAGCCGGCGC
GGTCGGCAGCAGACGCGGACACAGCAGCGGCCGCCCCGATCGGAGGGGGG
GGGGGCGTGAGTAGCCTGCAAGTGGCGGGAGACACGGGCGCGAGCACCAC
GCGTGCGGATGGCCTGCCGCCGCTGGGGAGCGGGTACCAGCACCCTGGAG
CGACCTCTGACGGATGGGGGATGGGACTACCGCAACAGGGGGGCTACCAG
GCGTCTAGTATGGTGCAAGCGCCGACGGTCGGAGTACCCGCGGCCACGGC
CGGGCACCAACAACCTGGAGCAGCGCCCGGCGGATGGGAGATGGGACAAC
CACTCCAAGGGGGCTACCCGGTGGCAGGGGTGCCGGGGGCCGCAGCCGTG
TCCAGTATGGTGCAAACGCCGACCGTCGGAGTAACGGCGGCCACAGCGGG
ATATACATGGTCAACGGCTGGAGGAAGGTCGGGAGGACGGTTCCAAGGCG
CGGGGGTGGCGGGGTCGGCGTGGCCGACCAACGGCACGGCAGGGGAAGAT
ACTCGGCTGCAGCCGCGGCAGCGCCAGGGGGCGCCGGCGCCCGGGTGGCA
CCAACAACAGCAGCAGCACGGATGGACGGGGGAGTGGGGGTCGCAGACGA
ACGCCGTGGGATGTGGCCAACAAGGACAAGGGCCGCAGGAGTGGCCCTCG
CAACAGCAGCAACTGACGCCGCAGCAGCAGTACATATGGGGGTCACGTGA
GGTTGCCATTTCGCAATCGGACGGGGGGGGTGATGGGGCGGTCGGGTATG
GTACGTTGAGGGTGGATGCGTTCGGCAGCGGTCGTGTGGGAGATGGCGGT
GAAATTTCTAGAAGGGAGCAGGCCCGCGCCGTAGGGTATGCGGCAATGGC
GGCACCTCGCCAGGCGGCGCGCGATGTTTCACCGGTGGTGGTATCCCGCG
GCGACAACCCCCCTCCCCCACCCCCCAGAGAACAGCCGGCGCGGTCGGCA
GCAGACGCGGACACAGCAGCGGCCGCCCCGATCGGAGGGGGGGGGGGCGT
GAGTAGCCTGCAAGTGGCGGGAGACACGGGCGCGAGCACCACGCGTGCGG
ATGGCCTGCCGCCGCTGGGGAGCGGGTACCAGCACCCTGGAGCGACCTCT
GACGGATGGGGGATGGGACTACCGCAACAGGGGGGCTACCAGGCGTCTAG
TATGGTGCAAGCGCCGACGGTCGGAGTACCCGCGGCCACGGCCGGGCACC
AACAACCTGGAGCAGCGCCCGGCGGATGGGAGATGGGACAACCACTCCAA
GGGGGCTACCCGGTGGCAGGGGTGCCGGGGGCCGCAGCCGTGTCCAGTAT
GGTGCAAACGCCGACCGTCGGAGTAACGGCGGCCACAGCGGGATATACAT
GGTCAACGGCTGGAGGAAGGTCGGGAGGACGGTTCCAAGGCGCGGGGGTG
GCGGGGTCGGCGTGGCCGACCAACGGCACGGCAGGGGAAGATACTCGGCT
GCAGCCGCGGCAGCGCCAGGGGGCGCCGGCGCCCGGGTGGCACCAACAAC
AGCAGCAGCACGGATGGACGGGGGAGTGGGGGTCGCAGACGAACGCCGTG
GGATGTGGCCAACAAGGACAAGGGCCGCAGGAGTGGCCCTCGCAACAGCA
GCAACTGACGCCGCAGCAGCAGTACATATGGGGG
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