mRNA_S-firma_F_contig1029.427.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1029.427.1
Unique NamemRNA_S-firma_F_contig1029.427.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: D7FPX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX2_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 2.060e-111
Identity = 190/301 (63.12%), Postives = 219/301 (72.76%), Query Frame = 1 
Query:  157 PCLHSS----HALAVSWCHR--PPGIRCPRQQQQTQRRRPRWLPVIQAEQQDELGDGMELIKPTLEQSLDAIDDVYMDRLPGEGRDKVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPDVSRITEPYDKKEMGKPKVVPWKKPEKENDFFYVEEGAGQAPGNDPVMLLVAVVGILGLSYVFL 1041
            P  H S    HA A +W  R  PP  R             R +P   ++ +   G GME  +P+LE+SLDAIDDV+MDRLPGEGR+KVK+FGAWLDAD+AGRKAGQGN+AAGLIAR   GEEL            + ++IFYEEAI++MRRR+CD +VALL+KAV LAG DSRRGGEFKLWAAQALQ   RN QAV VLKSLK HRD DVRKV AELLYIAQAP+LALN  DFV+FPD S IT+ YDKK++GKPK+ PWKK EKE D FYV E  G  PGNDPVM L A+VGILGLSY+FL
Sbjct:   13 PAFHQSNLQVHAAAAAWTRRRVPPTRR-------------RVVPAFMSDPRQGEG-GMEFTEPSLEESLDAIDDVFMDRLPGEGREKVKIFGAWLDADVAGRKAGQGNRAAGLIARMKNGEELTDQ---------EKAEIFYEEAIALMRRRDCDASVALLDKAVDLAGADSRRGGEFKLWAAQALQGVNRNNQAVEVLKSLKSHRDFDVRKVSAELLYIAQAPQLALNGEDFVDFPDTSGITDDYDKKDLGKPKIAPWKKSEKEEDMFYVGEDTGVRPGNDPVMFLAAIVGILGLSYMFL 290
[Close]
BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: A0A835ZHV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV4_9STRA)

HSP 1 Score: 171 bits (434), Expect = 8.230e-45
Identity = 114/244 (46.72%), Postives = 143/244 (58.61%), Query Frame = 1 
Query:  328 TLEQSLDAIDDVYMDRLPGEGRDKVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPD--VSRITEPYDK---KEMGKPKVVPWKKPEK-ENDFFYVEEGAGQAPGNDPVMLLVAVVGILGLSYVFL 1041
            TLE+  D +DD+ MDR   +GRD+VK++GAWLDADIAGR  G  NKAA L A+A  GE L         +  +  ++FYEEAI  M + E D A  LL +AVA  GEDSRRGGEFKLW AQALQ    N  AV +L+S++ H D DVR V  ELLYIA APKL L   D V F     + I + +D    +E+ +   VP+K  +  E    YV       P  +P  L VAV  ILG+S + L
Sbjct:   54 TLEEEFDELDDMVMDRPANKGRDQVKIWGAWLDADIAGRNVGSPNKAAALKAKAAAGEAL---------TDREKGEVFYEEAIIYMGKGEYDTAQELLRRAVAFVGEDSRRGGEFKLWLAQALQGVLDNDGAVTLLRSMRTHPDRDVRTVAKELLYIATAPKLDLEAADLVTFGAGLTAGIDDAFDASRYRELKRGPKVPYKDGQLLEKKPAYVVREYQPPPEANPAFLAVAVAVILGVSALVL 288
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BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: A0A6V1UNI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UNI6_HETAK)

HSP 1 Score: 160 bits (405), Expect = 1.550e-40
Identity = 96/192 (50.00%), Postives = 126/192 (65.62%), Query Frame = 1 
Query:  313 ELIKPT-LEQSLDAIDDVYMDRLPGEGRDKVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPDVSRITEPYDKK 885
            +L KP  LE+ LD IDD+ M R   E RD+VKV+GAWLDADIAGRKAG   K   + A+   GE LAP          +  +IF+EEA+  M R     +VAL+E+AV  AG +S RGG F+LW AQA+   GR + A   LK+L  H D ++R+V AELLYI +AP++ L ++DFVEFPD+S ITE +D+K
Sbjct:   75 DLSKPMDLEKELDLIDDITMGRSEME-RDQVKVYGAWLDADIAGRKAGDNRK---IKAKLASGERLAPE---------ERGEIFFEEAVKAMNRGRYAESVALIEQAVRYAGRESTRGGGFRLWLAQAVYAQGRREGAREGLKALGTHPDSNIRRVAAELLYIYEAPEIKLTKDDFVEFPDMSTITEKFDRK 253
[Close]
BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: A0A7S2V7T9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7T9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 7.690e-40
Identity = 100/235 (42.55%), Postives = 139/235 (59.15%), Query Frame = 1 
Query:  343 LDAIDDVYMDRLPGEGRD-KVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPDVSRITEPYDKKEMGK-PKVV---PWKKPEKENDFFYVEEGAGQAPGNDPVMLLVAVVGILGLSY 1032
            LD IDD+ M+R P +  D +V+V+GAWLD+DIAGRK     K   L ++ ++GE+L            + ++IF+EEA+  M   + D +V L+++AV  AG DSRRGG+F+LW AQ L   G+   A+ +L+ LK HRD DVR V AE+LYI +AP++ L + DFVEFPD S I E Y +    K PK+     WK+PEKE    YV    G  P  D     +A+     L+Y
Sbjct:   86 LDVIDDLSMNRSPNDDGDGRVRVYGAWLDSDIAGRKVASKTKE--LRSKMNKGEQL---------EDAEKAEIFFEEAVGYMNSGKYDVSVKLIQRAVEYAGWDSRRGGQFELWLAQGLYAEGQIPDAIKLLRGLKVHRDRDVRTVAAEILYIYEAPRMKLRKEDFVEFPDTSLIDEKYAETVWTKGPKIQVARKWKEPEKEE---YVIRSHGPPPKFDLTFGAIALALFAALTY 306
[Close]
BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: A0A7S2BT75_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BT75_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.670e-28
Identity = 89/245 (36.33%), Postives = 134/245 (54.69%), Query Frame = 1 
Query:  331 LEQSLDAIDDVYMDRLPGEGRDKVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAG-EDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPDVSRITEPYDKKEM-------GKPKVVPWKKPEKENDFFYVEEGAGQAPGN-DPVMLLVAVVGILGLSYVF 1038
            +E+ +D IDD+ M+R    GRDKVK++G WLDAD+ GRKAG+ N+AA L    D         D T      +++  +   ++ M+  E   A  L  +AV L G   SRRGGE  LW AQA+   G    A+ +LK L+ H D  V KV  E+ YI +APKL ++ ++ V+ PD+SR+ +   K++M       G P V  +KKP K++   +V+E   + P   DPV   + +   +G  ++F
Sbjct:   13 VEEEMDRIDDLSMNRPANIGRDKVKMWGVWLDADLVGRKAGK-NQAAFLTDEVD---------DDT------MAERIFSVGVTQMKLGEYAAAGGLFNRAVGLVGGSSSRRGGEIALWEAQAVHANGDVAAALRLLKGLEQHMDSSVGKVAGEIRYIFEAPKLEMDPDNMVKIPDLSRLDDWDSKRDMRFATQTTGGP-VREFKKPPKKHSLEWVKEQRNEPPAEIDPVQFCLLLSLAVGSIFLF 240
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BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: A0A2V3J3V9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3V9_9FLOR)

HSP 1 Score: 101 bits (252), Expect = 5.390e-20
Identity = 65/191 (34.03%), Postives = 98/191 (51.31%), Query Frame = 1 
Query:  295 ELGDGMELIKPTLEQSLDAIDDVYMDRLPGEGRDKVKVFGAWLDADIAGRKAGQG----NKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPDV 855
            E GD    +  +L   +D +DD+  DR P     +VK+FGAWLD  +AGRKA +     +KA     +AD   +      V+     + S   + + +++  +     + AL  +A  + G  SR GG+++LW AQ+L  AG  + A  +L+SL+ H D DVRKV  EL +I  AP L L    F E P +
Sbjct:   43 ENGDEEASMTASLPDDIDQMDDILFDRAPNNVN-QVKLFGAWLDDALAGRKARKNLTPTDKAVSGSDQADASVQSHKKASVSAEEAVEHSSAIFAKGMTMFNKGFYRQSTALFSEAAGIVGHGSRLGGQYQLWHAQSLDAAGDKRNAASLLESLRMHADPDVRKVSRELHFIITAPALELAPGTFFEVPSI 232
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BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: A0A7J7ICZ3_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICZ3_9RHOD)

HSP 1 Score: 89.7 bits (221), Expect = 1.200e-15
Identity = 65/177 (36.72%), Postives = 90/177 (50.85%), Query Frame = 1 
Query:  394 DKVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPDVSRITEPYDKKEMGKPKVVP-WKK 921
            D+ +VFGAWLD  +   +  QG       AR   G            S  K ++  + + +  +   +   A  L+ +A ALAG  +R GGE+ LW AQAL   G+N +A  VL+ L  HRD DVR+V   LLYI QAP+L L    FV+  DV  I +P      G+ + +P WKK
Sbjct:  127 DRSRVFGAWLDNQVLEFERIQG------AARQHPGR-----------SRQKQAENAFAQGVQELNAGQYAKATDLIFRASALAGHQTRLGGEYLLWLAQALDAQGKNTRAQEVLRRLHYHRDNDVRRVAENLLYILQAPRLRLGPESFVQI-DVEAICDP------GRARDIPGWKK 279
[Close]
BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: A0A7S1DL49_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DL49_HEMAN)

HSP 1 Score: 82.8 bits (203), Expect = 3.170e-13
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 1 
Query:  397 KVKVFGAWLDADIAGRKAGQGNKAAGLIARA---------DRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALA--GEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEF 846
            KVKVFG W+D ++AGR  G   K    + RA         +    LA  + V  I   +  Q  ++     MR  +   AV+    AVA    G  SR GG + +W AQAL   G   +A+ +LK+  GH D DVR+V   L +I  APKL L+EN+F  F
Sbjct:  153 KVKVFGGWVDTEVAGRD-GFKKKEDRKVERALMDKYMKNTNGNATLATELVVQHIRKLQEGQRCFDTGTRAMRAGQYKAAVSAFVAAVAAVPEGRASREGGFYSIWLAQALDAKGEKYEAIKMLKAAMGHSDRDVRRVAEGLEFIMMAPKLELDENNFAWF 312
[Close]
BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: R1EFV5_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EFV5_EMIHU)

HSP 1 Score: 79.7 bits (195), Expect = 9.930e-13
Identity = 56/150 (37.33%), Postives = 77/150 (51.33%), Query Frame = 1 
Query:  397 KVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALA--GEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFV 840
            K  VFGA LD  +AG           LI     G   AP        H +I    +   +  M+     +AV    +AVA A  G   R GG++ +W AQALQ AGR K+AVG+L++ + H D DVRK+   +LY+ +AP+L L E +FV
Sbjct:  119 KANVFGARLDPKVAGET---------LI-----GVNAAPEEP-----HEEI----FAAGVKAMKGGYYKDAVRYFTQAVAAAPGGLTGREGGQYSVWLAQALQAAGRTKEAVGLLQTCESHPDSDVRKISESVLYVLRAPELKLGEENFV 245
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BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Match: M1VAQ1_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VAQ1_CYAM1)

HSP 1 Score: 77.0 bits (188), Expect = 2.090e-11
Identity = 53/165 (32.12%), Postives = 77/165 (46.67%), Query Frame = 1 
Query:  346 DAIDDVYMDRLPGEGRDKVKVFGAWLDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEEAISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQAVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFV 840
            D  DD+  D       D+ +VFGAWLD  +                R DR +  A       +     ++  +   +  +       A   + +A AL G+ +R GGE+ LW AQAL   G+N +A  VL+ L+ H+D DVR+V   LL+I QAP+L L    FV
Sbjct:  122 DGYDDISSDSDVDPVLDRGRVFGAWLDNQVL---------------RLDRIQSAAMQAPGQTLQER--AERAFARGVQALTDGHYATASDAIFQASALPGQQTRLGGEYLLWLAQALDAQGKNARAQEVLRRLQYHKDRDVRQVAESLLFILQAPRLRLGPESFV 269
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1029.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FPX2_ECTSI2.060e-11163.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHV4_9STRA8.230e-4546.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1UNI6_HETAK1.550e-4050.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V7T9_9STRA7.690e-4042.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BT75_9STRA2.670e-2836.33Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A2V3J3V9_9FLOR5.390e-2034.03Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7J7ICZ3_9RHOD1.200e-1536.72Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S1DL49_HEMAN3.170e-1336.65Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
R1EFV5_EMIHU9.930e-1337.33Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
M1VAQ1_CYAM12.090e-1132.12Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1029contigS-firma_F_contig1029:16066..19767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog251229.Chro_4967
PFAMsDUF3153,TPR_19
Max annot lvl1117|Cyanobacteria
Evalue6.43e-13
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G6IQ@1117|Cyanobacteria,3VK1W@52604|Pleurocapsales
DescriptionSPTR Alr1246 protein
COG categoryS
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008350.1
Exons5
Model size2018
Cds size927
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.5122004-UTR-S-firma_F_contig1029:16065..161851622815559.5122004-UTR-S-firma_F_contig1029:16065..16185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1029 16066..16185 +
1696949415.4507384-UTR-S-firma_F_contig1029:16065..161851696949415.4507384-UTR-S-firma_F_contig1029:16065..16185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1029 16066..16185 +
1622815559.5750332-UTR-S-firma_F_contig1029:18796..197671622815559.5750332-UTR-S-firma_F_contig1029:18796..19767Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1029 18797..19767 +
1696949415.52021-UTR-S-firma_F_contig1029:18796..197671696949415.52021-UTR-S-firma_F_contig1029:18796..19767Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1029 18797..19767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.5261655-CDS-S-firma_F_contig1029:16185..164531622815559.5261655-CDS-S-firma_F_contig1029:16185..16453Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 16186..16453 +
1696949415.4622924-CDS-S-firma_F_contig1029:16185..164531696949415.4622924-CDS-S-firma_F_contig1029:16185..16453Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 16186..16453 +
1622815559.5357714-CDS-S-firma_F_contig1029:16743..168611622815559.5357714-CDS-S-firma_F_contig1029:16743..16861Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 16744..16861 +
1696949415.4726024-CDS-S-firma_F_contig1029:16743..168611696949415.4726024-CDS-S-firma_F_contig1029:16743..16861Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 16744..16861 +
1622815559.54499-CDS-S-firma_F_contig1029:17230..174981622815559.54499-CDS-S-firma_F_contig1029:17230..17498Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 17231..17498 +
1696949415.490983-CDS-S-firma_F_contig1029:17230..174981696949415.490983-CDS-S-firma_F_contig1029:17230..17498Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 17231..17498 +
1622815559.5541804-CDS-S-firma_F_contig1029:17651..177621622815559.5541804-CDS-S-firma_F_contig1029:17651..17762Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 17652..17762 +
1696949415.502035-CDS-S-firma_F_contig1029:17651..177621696949415.502035-CDS-S-firma_F_contig1029:17651..17762Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 17652..17762 +
1622815559.5647857-CDS-S-firma_F_contig1029:18634..187961622815559.5647857-CDS-S-firma_F_contig1029:18634..18796Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 18635..18796 +
1696949415.5108006-CDS-S-firma_F_contig1029:18634..187961696949415.5108006-CDS-S-firma_F_contig1029:18634..18796Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1029 18635..18796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1029.427.1prot_S-firma_F_contig1029.427.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1029 16186..18796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1029.427.1

>prot_S-firma_F_contig1029.427.1 ID=prot_S-firma_F_contig1029.427.1|Name=mRNA_S-firma_F_contig1029.427.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=309bp
MLSAVPAFLVQSPCLHSSHALAVSWCHRPPGIRCPRQQQQTQRRRPRWLP
VIQAEQQDELGDGMELIKPTLEQSLDAIDDVYMDRLPGEGRDKVKVFGAW
LDADIAGRKAGQGNKAAGLIARADRGEELAPPIDVTCISHGKISQIFYEE
AISVMRRRECDNAVALLEKAVALAGEDSRRGGEFKLWAAQALQEAGRNKQ
AVGVLKSLKGHRDLDVRKVGAELLYIAQAPKLALNENDFVEFPDVSRITE
PYDKKEMGKPKVVPWKKPEKENDFFYVEEGAGQAPGNDPVMLLVAVVGIL
GLSYVFLG*
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mRNA from alignment at S-firma_F_contig1029:16066..19767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1029.427.1 ID=mRNA_S-firma_F_contig1029.427.1|Name=mRNA_S-firma_F_contig1029.427.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3702bp|location=Sequence derived from alignment at S-firma_F_contig1029:16066..19767+ (Sphaerotrichia firma ET2_F female)
CCGTTTCTTCGTTTTGAAAGAACACACGTTTTCTTCCTTGCTCTCACATC
GTCCCCGAGTTGCCGGCGGTGGGCCGCTGTCTAGTGTGTGTCCACAGACA
GAGCCACACGCGCACTCACGATGCTGTCTGCTGTTCCAGCGTTCCTAGTT
CAAAGCCCTTGTCTGCACTCATCTCACGCGCTTGCAGTGTCATGGTGCCA
TCGCCCCCCCGGTATCAGATGTCCACGGCAACAGCAGCAGACGCAAAGGC
GAAGACCGAGATGGCTGCCCGTCATACAAGCGGAGCAGCAAGATGAGCTG
GGCGATGGGATGGAACTAATCAAACCTACGCTGGAGCAATCGCTAGATGC
CATTGACGATGTGTATATGGATAGGCTGCCAGGCGAGGGTGAGCCGAGCC
GGTCTGTACAAGCGTGTTTCATGTAGACTAAACCTTCCTGCGGGGGCCGA
GATGTGCGTCACCGGCAATGCACTTACTTGATGGAAATAATGCATCACGC
TCGGGCAGAACGAACCCCTATCGTTAGACGAGTCTGCTTCTGCGCGCTCT
ATATTACGCAACCGCTGTATTGTTGGCTTTGTGTTGCGCCCTACGCAATC
ACGGACTGCTAGACAACAGCAGCAGTCGTGGGATTGCTTTGTGACGGATA
GGTGACCTCGAGATCTTGTTGACAGCAGGACGAGACAAGGTCAAGGTGTT
CGGGGCATGGCTGGACGCAGACATTGCCGGCCGAAAGGCGGGGCAGGGAA
ACAAAGCGGCGGGTCTAATTGCTCGTGCCGATCGGGGAGAAGAGCTGTCA
GACCAGGATATGGCAGAGGTGCGCGCCCTAGCTTGTTTTGTGTCACGCAA
GAGAGGGAGCAGGGACACTTTCCTTGCCCAGAGTGTTCAACCAGAACGCA
GCGAGAGCATGTTTGGTTTTGATACTGCAGGGCAGCAAGTTCAAAGACAA
TGTTGGAAAACGAAAGAGACCCTACTTCCATGGTGAGGAAGAAGGTTGTC
AAGTGTACGTGTTGCGTTGGACAGGGTTGCCGTGTGGGCGGAACCATGGT
TTGTCATGGTATGTCCGGTCACATCCTGGGGATGGTCATATATTTGGATG
CTGGATGGGGTAAATTTATCGACAAGTTGTGTCTGGAGTTGCGTATCGGG
ACGCTTTCTTTAGAGCGCCCCCCCTATCGACGTGACATGCATATCCCATG
GCAAAATTTCACAGATTTTCTACGAGGAAGCGATCTCGGTGATGAGGCGC
CGCGAGTGCGACAATGCGGTGGCCCTGCTGGAGAAGGCGGTTGCGCTGGC
GGGGGAAGACTCGAGGAGAGGCGGCGAGTTCAAGCTGTGGGCAGCCCAGG
CGCTGCAGGAGGCGGGCAGGAACAAGCAGGCGGTGGGGGTTCTGAAGAGC
CTCAAGGGCCACAGAGACTTGGACGTTCGAAAGGTGCGCGTATGCATGCT
CTTTGTTTTATGTGGATGCGTATGACAGGGAGTACGCCAAGGTATTTTTT
TTCCAAAGAAACATGAACTCGCAGATGCACGATCGGCCACATAAGTAAAA
TTTGACACTGGGTTGGCGTTGTTTGCGGCCGAGCAGGTCGGCGCCGAGCT
TCTGTACATCGCCCAAGCCCCAAAGCTGGCGCTCAACGAGAACGACTTTG
TCGAGTTCCCAGACGTGTCCCGCATCACGGAACCGTACGACAAGAAGGTG
TGAGAGCAGGCCATGGTCGTCGGCATTGATTGGCTATATTGTTTTCTTCT
GGCGCGCGGTTTGGTGGGTTCAAGGTACACAGCCAAACAATACACGACGG
TGTGTTGTGGCAGTTGTTTTGCTTTATTGAGTACTTCGTCTTCCCATGGC
TTTGGCGGTGTTCGATCGTGCAAGTCGGTGGCTCGCTTGGGTACTACAAG
TGGAAATCTGCATGTATTCTTGAGCGTCTCCGCCAAGGCTAACCTTTCCA
CAGCAGGGATCGTGCGACGAAGACGGAACGATATATCATAGGTCGCCGTC
GCGTGTCACGTCCTTGCTGTTTGTGCGCTCGGGACTTGTGCTGGTTTCCA
TTTTCCGTACACTTCCGAGGTGGTGCTTTTGGGGTTGGCATCGCGGGAAA
CGTTAACGTTAGCAGATGTACTCGTCCGCCTTCGTAGACCAGTTGACACA
CAGGGAGTGTGGCTACAACATCGAGGAGAAGATATCGCACGGCAGCCTGA
AGGCTTGCTGTCTTGTCACTGTCGCTGTCGCCGTCGTTGTTTTTTTGCTG
CTTCTGGCGAATAGTTGCGCTCCCGAAAACACTCGCGTGTGGTTTCAGTG
CAGCACCGGGTGGTTTCGCGTACGGCCGATGAGGGCCGTTGCGTTTGTCG
TCATCCCGTAGTCCCTTCCGTTGACCTACATACTGCTGTTGTGATTTCCC
CCGACGGAACCGAATAGGCCAACTCGGACGCGGCAGATGGACAATAGTGA
GAGAACCGAAGCAACGCTTTCGCTTTCAGCGAGACGCTTGCCCCACTCGT
TGTGCATCTCAGTGCAGTGGATGAAGTTTCCCAATCTCGACCCCTTCTTG
CCCTCCCCGCCCCTGCCAGGAAATGGGAAAGCCTAAAGTGGTTCCGTGGA
AAAAGCCGGAGAAAGAGAACGATTTCTTTTATGTCGAAGAGGGCGCAGGT
CAAGCGCCGGGCAACGATCCTGTTATGCTCTTGGTTGCAGTCGTCGGGAT
CTTGGGCTTGTCTTACGTGTTCTTGGGGTGACGAGACCCGACCCGGCGAA
GCACCACAACAGCTGCAGGCAAATGCTTTATATGCAGCAGATGCCTCCTC
TTTGGTTTGCCTCTTTCGTCGGCTGTCGTGTGTTTCGTTAATGTTTTGTG
TGTTCATGTGATTCTTGTCTACGAGGCATTGTACAGCAGTTGGGAGGTTG
CGTGGAGAGCGAACGAGCGCTTTTTTTGCGGGGAGTTTTGCTCGAGCTTC
TCGCGTTGAAGGTGTATCAAGTTAGTTTGTGAGAGACCACTTTCGGATAT
GTTGGTCGGGGGGAGTTTCAGCAGTTCTCGCAAGACCTTCGTTGAAAGGT
TACACGGATCTTCATCCGCAAGGTTGCTCTCGAACAGTGTGTGTTTGCTG
TTACGCTATGCAGCCTTTACGTTCGGAGGAAGACGACACGAAGAAAGTGC
TTATGCAGCACATTTGCGTTCCGAGGAGAAGAGAAACCTCGTCCGTGCGG
CAATTGTGTGAGAAAGGTAGATACTATTTCAAACAACGTGCCTTCTGTGA
ATGGCACGACAACGGGATGTTAGAGTAGCTGTGGATCGTTCGCAAAGCGT
GGCTTATCTGGTAGGAATCTCGATGCCCGTCAATCGTTGGCTCACGCGAG
ACGCAGGGCCCCCTTTTGGCCAGGTAAAATTACTCCTCCGAAGACAGGAT
GTTTTTTAGTTTATTTACGCGTCCAAGTGAGGTGGAGCCGAACAGCAAAT
GACAGAAGTGTGTGTATTGGTCCCATTTATTCGGGCGTCTGTAGTCTACA
ACTTTTTGGTCACACAGGCGGGGGTGAACACTGAGGCTTTTTTCTTTTTG
CCCCACCTCCCTGCGGTGGTCTTGATTTTTATCGCGATACAGGAGAAGGG
TTCAGCCGTCCCGTTCCCTCGTCAACGGTGCTAATACGGTGCTAATGTCG
CAGTTTGTGTACTCACGAGCTTTTCCAGCTATTATGGCATCGTGTTCCAC
GG
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Coding sequence (CDS) from alignment at S-firma_F_contig1029:16066..19767+

>mRNA_S-firma_F_contig1029.427.1 ID=mRNA_S-firma_F_contig1029.427.1|Name=mRNA_S-firma_F_contig1029.427.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1854bp|location=Sequence derived from alignment at S-firma_F_contig1029:16066..19767+ (Sphaerotrichia firma ET2_F female)
ATGCTGTCTGCTGTTCCAGCGTTCCTAGTTCAAAGCCCTTGTCTGCACTC
ATCTCACGCGCTTGCAGTGTCATGGTGCCATCGCCCCCCCGGTATCAGAT
GTCCACGGCAACAGCAGCAGACGCAAAGGCGAAGACCGAGATGGCTGCCC
GTCATACAAGCGGAGCAGCAAGATGAGCTGGGCGATGGGATGGAACTAAT
CAAACCTACGCTGGAGCAATCGCTAGATGCCATTGACGATGTGTATATGG
ATAGGCTGCCAGGCGAGGATGCTGTCTGCTGTTCCAGCGTTCCTAGTTCA
AAGCCCTTGTCTGCACTCATCTCACGCGCTTGCAGTGTCATGGTGCCATC
GCCCCCCCGGTATCAGATGTCCACGGCAACAGCAGCAGACGCAAAGGCGA
AGACCGAGATGGCTGCCCGTCATACAAGCGGAGCAGCAAGATGAGCTGGG
CGATGGGATGGAACTAATCAAACCTACGCTGGAGCAATCGCTAGATGCCA
TTGACGATGTGTATATGGATAGGCTGCCAGGCGAGGGACGAGACAAGGTC
AAGGTGTTCGGGGCATGGCTGGACGCAGACATTGCCGGCCGAAAGGCGGG
GCAGGGAAACAAAGCGGCGGGTCTAATTGCTCGTGCCGATCGGGGAGAAG
AGCTGACGAGACAAGGTCAAGGTGTTCGGGGCATGGCTGGACGCAGACAT
TGCCGGCCGAAAGGCGGGGCAGGGAAACAAAGCGGCGGGTCTAATTGCTC
GTGCCGATCGGGGAGAAGAGCTCGCCCCCCCTATCGACGTGACATGCATA
TCCCATGGCAAAATTTCACAGATTTTCTACGAGGAAGCGATCTCGGTGAT
GAGGCGCCGCGAGTGCGACAATGCGGTGGCCCTGCTGGAGAAGGCGGTTG
CGCTGGCGGGGGAAGACTCGAGGAGAGGCGGCGAGTTCAAGCTGTGGGCA
GCCCAGGCGCTGCAGGAGGCGGGCAGGAACAAGCAGGCGGTGGGGGTTCT
GAAGAGCCTCAAGGGCCACAGAGACTTGGACGTTCGAAAGCGCCCCCCCT
ATCGACGTGACATGCATATCCCATGGCAAAATTTCACAGATTTTCTACGA
GGAAGCGATCTCGGTGATGAGGCGCCGCGAGTGCGACAATGCGGTGGCCC
TGCTGGAGAAGGCGGTTGCGCTGGCGGGGGAAGACTCGAGGAGAGGCGGC
GAGTTCAAGCTGTGGGCAGCCCAGGCGCTGCAGGAGGCGGGCAGGAACAA
GCAGGCGGTGGGGGTTCTGAAGAGCCTCAAGGGCCACAGAGACTTGGACG
TTCGAAAGGTCGGCGCCGAGCTTCTGTACATCGCCCAAGCCCCAAAGCTG
GCGCTCAACGAGAACGACTTTGTCGAGTTCCCAGACGTGTCCCGCATCAC
GGAACCGTACGACAAGAAGGTCGGCGCCGAGCTTCTGTACATCGCCCAAG
CCCCAAAGCTGGCGCTCAACGAGAACGACTTTGTCGAGTTCCCAGACGTG
TCCCGCATCACGGAACCGTACGACAAGAAGGAAATGGGAAAGCCTAAAGT
GGTTCCGTGGAAAAAGCCGGAGAAAGAGAACGATTTCTTTTATGTCGAAG
AGGGCGCAGGTCAAGCGCCGGGCAACGATCCTGTTATGCTCTTGGTTGCA
GTCGTCGGGATCTTGGGCTTGTCTTACGTGTTCTTGGGGTGAGAAATGGG
AAAGCCTAAAGTGGTTCCGTGGAAAAAGCCGGAGAAAGAGAACGATTTCT
TTTATGTCGAAGAGGGCGCAGGTCAAGCGCCGGGCAACGATCCTGTTATG
CTCTTGGTTGCAGTCGTCGGGATCTTGGGCTTGTCTTACGTGTTCTTGGG
GTGA
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