mRNA_S-firma_F_contig1029.426.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: D7FPX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX3_ECTSI) HSP 1 Score: 654 bits (1686), Expect = 1.100e-221 Identity = 360/675 (53.33%), Postives = 424/675 (62.81%), Query Frame = 1
Query: 499 DDGNPELRVSIEESNRGP--PREVEAAEDI------DPGVLIEEMEENWTKQALTPAAPGAVLKNVRSAHAEISDEILTRWGPEYGDSLLFSGGMKFSDGGTVIENKFLNAVVEQQGFLAAFTGVSTTAGHDCLFEQSYPVLLNQTLGRLLATAGVKFEAINVAMGNTRVAPYSWCVDAHAGLDADIISWDMTMMLASNQCGRAATGVELFIRSASVLPKRPAVLLTDASPDQDLCTNGHLRQIEKQDQGLKGDCIPSRDLFLVYRDFGLHQISPRSLVPEVTCGDDVFARGRLYNNTEKDYQHPVGWHAGPAGHLLVSDMLFMHYAEVFLSAMERLDAARPGITAAGLQHLDALSSGGRHSLRKALGLR---------EVYGNRSGSDSSSXXXXXXXXXAAPWMGGGRGGILPPPAWCKGWRFCDWAGNYRCADTYFPLAGKEGSRLVDMVSERTPAVLNRNHSEYFAEPSRGRWVVTLNEESQKIKDYLEMPPPEGFHHPIDMKWVLVGDKDSGPIEFEFETLGVPSGRRTRQRRASVVAGEGNXXXXXXXXXXXXXXXXXDAATRET--------------TGQVAQFDSRVTVCKPDFIDRVAFNESSHVRFSVDGVDVSTVEVDQQYGLYPGSCVLLDAEVGVGRHTVRVEPLEAGEPFVAISHVLYPA 2430
D+ PEL S EE+ + P P E DP IE M+E+WT+ A PGAVL+N RS ++EIS +ILTRWG +Y ++ LFSGGMKFSDGG V+ENK LNAVVEQ+GFLAAFTGVSTTAGHDCLFEQSYPVLLN+T GRL+A GVKFEAINVAMGNTRVAPYS+CV+AHAGL+AD+ISWDMT+M+ASN+CG+AA G+ELF+RSA+VLPKRP VLL DA+P+QD+CTNGHLRQI+K D G WHAGP GHLLV+DMLFM YAEVFL A+ERL+ +PGITAAGL+ L+ALS+ GR +L ++LGL +++G + +DS S +MGGGRG ILPPP+WCKG+RFC AG+YR SEYF EPS+G W VTLNEE+Q IKDYL++ PP GFHHPID KWVLVGD +GPIEFEFETLG+P R R+RRA V GE A E T FDSRVTVCKPDFIDRV FNE+S VRFSVDG+ V T Q GL+ SC LLD VGVGRHTV+VEPL+ GEP+VAISHVLYPA
Sbjct: 105 DNNAPELHGSWEETQQDPVLPEEXXXXXXXXXXXGNDPIAEIEGMDEHWTQHASVAQPPGAVLENARSVYSEISSDILTRWGYKYANTPLFSGGMKFSDGGKVVENKMLNAVVEQEGFLAAFTGVSTTAGHDCLFEQSYPVLLNETFGRLMAATGVKFEAINVAMGNTRVAPYSYCVEAHAGLEADLISWDMTLMVASNECGKAAAGIELFVRSATVLPKRPVVLLMDATPNQDVCTNGHLRQIKKLDDG---------------------------------------------------------WHAGPTGHLLVADMLFMAYAEVFLRALERLNGVKPGITAAGLRQLNALSANGRLNLWESLGLDGGGATDARPDLHGEATAADSQSGSNNYPA-----FMGGGRGDILPPPSWCKGYRFCQGAGSYR--------------------------------SEYFVEPSQGHWAVTLNEEAQSIKDYLKVSPPRGFHHPIDYKWVLVGDAAAGPIEFEFETLGIPPAGRHRRRRAKVEEGEEEDAHTFSSSAGREEPAPESAGANEEFSNSAGIDAEKTRPTEDATDFDSRVTVCKPDFIDRVQFNETSGVRFSVDGIQVETTVELVQVGLHVQSCALLDVAVGVGRHTVKVEPLKVGEPYVAISHVLYPA 685
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: D8LSB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB3_ECTSI) HSP 1 Score: 377 bits (967), Expect = 2.410e-118 Identity = 218/420 (51.90%), Postives = 270/420 (64.29%), Query Frame = 1
Query: 1264 VYRDFGLHQISPRSLVPEVTCGDDVFARGRLYNNTEKDYQHPVGWHAGPAGHLLVSDMLFMHYAEVFLSAMERLDAARPGITAAGLQHL-------DALSSGG----RHSLRKALGLREVYGN--RSGSDSSSXXXXXXXXXAAPWMGGGRGGILPPPAWCKGWRFCDWAGNYRCADTYFPLAGKEGSRLVDMVSERTPAVLNRNHSEYFAEPSRGRWVVTLNEESQKIKDYLEMPPPEGFHHPIDMKWVLVGDKDSGPIEFEFETLGVPSGRR-------------TRQRRASVVAGEGNXXXXXXXXXXXXXXXXXDAATRETTGQVAQF-----DSRVTVCKPDFIDRVAFNESSHVRFSVDGVDVSTVEVDQQYGLYPGSCVLLDAEVGVGRHTVRVEPLEAGEPFVAISHVLYPA 2430
VYR+FGLH+++P SLVPE TCG++VF RLYN + KD P WHAGP GH LV+DMLFMHYAEVFL A+ RL+ PG+TA L+ DA S R S+R LRE G + D+ + +MGGGRG ILPPPAWC GWRFC AG+YRCA+TYFP A +G+RLV MVS ++PA+LN +H E AEP+ G W +TLNEES+++ DYL+ PPEGFHHPID+K VLVGD SG IEFEFET+GVP+G RA + +GNXXXXXXXXXXX + R Q+ Q DSRV +CKPDFI RV F +S+ V F VDGV E++Q + + GSCV+L+ +VGVGRHTV VEPL +G P+VA+SH+LYPA
Sbjct: 3 VYREFGLHRMTPSSLVPENTCGNEVFDYHRLYNASLKDIPRPSSWHAGPPGHQLVADMLFMHYAEVFLKAVGRLEDVAPGVTARQLRDSGGEIIPGDAAVSSSERETRESIRDLTSLRETLGLVVEAVDDNDNV-----------YMGGGRGDILPPPAWCAGWRFCLGAGSYRCANTYFPQAAGKGARLVGMVSAKSPAILNLDHKEMIAEPTSGHWAMTLNEESERLLDYLKTFPPEGFHHPIDLKLVLVGDAASGAIEFEFETIGVPAGTEGWLSEEXXXXXXXXXDDRAEELV-DGNXXXXXXXXXXXDEKQEEAGSHRAMQDQLQQMNSMSQDSRVVICKPDFITRVDFTDSTQVTFRVDGVVAIAEELEQGF-MTQGSCVILETDVGVGRHTVSVEPLHSGAPYVAVSHLLYPA 409
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: A0A6H5JNP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP8_9PHAE) HSP 1 Score: 329 bits (844), Expect = 1.410e-98 Identity = 237/546 (43.41%), Postives = 291/546 (53.30%), Query Frame = 1
Query: 1054 MMLASNQCGRAATGVELFIRSASVLPKRPAVLLTDASPDQDLCTNGHLRQIEKQDQGLKGDCI-PSRDLFLVYRDFGLHQISPRSLVPEVTCGDDVFARGRLYNNTEKDYQHPVGWHAGPAGHLLVSDMLFMHYAEVFLSAMERLDAARPGITAAGL-----------------QHLDALSSG----GRHSLRKALGLREVYGN----------RSGSDSSSXXXXXXXXXAAPWMGGGRG-GILPPPAWCKGWRFCDWAGNYRCADTYFPLAGKEGSRLVDMVSERTPA----------------VLNRNHSEYFAEPSRGRWVVTLNEESQKIKDYL-EMPPPEGFHHPIDMKWVLVGDKDSGPIEFEFETLGVPSGRR-----TRQRR------------ASVVAG-EGNXXXXXXXXXXXXXXXXXDAATRETTGQVAQF-------------------DSRVTVCKPDFIDRVAFNESSHVRFSVDGVDVSTVEVDQQYGLYPGSCVLLDAEVGVGRHTVRVEPLEAGEPFVAISHVLYPA 2430
M +A+ C +AA VELFIRS+ VLP+RPA+L+ DA DQ G L+ ++ +++ G C P +L YRDFG+H I SL+ E GD+ FA LY K Y P+ WH PAGH LV+DMLFMHY ++FL A++ L+ A PG+TAA L +H + SS +LR+A+GL N R G +MGGGRG G+LP WC G C AGNYRCA+TY+PL G +GSRL+DMV + + NR+ + A PS GRW VTLNE S+ DY+ PEG+H PID+KWVLVGD DSGPIEFEF T GVP + TR A+ V G EG XXXXXXXXXXXXXX A GQV DSRV VCKPDFIDRV F + V FS+DGV+ S V ++ GL SC LL AEVG GRH ++V PL GEPFVAISHV+YPA
Sbjct: 1 MEIATLACEKAAAAVELFIRSSLVLPRRPAILVLDAQADQG--AKGRLKLLKHRNRRFLGYCGGPKPNLMDAYRDFGVHNIFASSLILEYAAGDERFAHEVLYA-AGKHYPRPMKWHPAPAGHELVADMLFMHYGKLFLEAIDLLEQASPGLTAAELREKKEQQGQQPQQERSREHDGSGSSDHGTISMKALREAVGLAGDNPNVFVRRPDDKARRGGGEGEESPIRPPPTECSYMGGGRGRGVLPLAEWCSG-AHCQGAGNYRCANTYYPLEGNQGSRLLDMVVSDSDGEGEGGGENGDPGNPVGLFNRDEEKLRASPSEGRWAVTLNEVSRPAIDYMMNGRAPEGYHKPIDVKWVLVGDADSGPIEFEFFTGGVPLDKAIDKVTTRSEAXXXXXXXXXXXVATGVQGVEGAAIHXXXXXXXXXXXXXXXTAVAPVGGQVGVLPLGPVEAAAAAALAGTKVVDSRVVVCKPDFIDRVDFADPGGVVFSIDGVETSVVPAEED-GLMTKSCSLLAAEVGPGRHRLKVVPLRRGEPFVAISHVIYPA 541
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: D7FUH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH4_ECTSI) HSP 1 Score: 275 bits (704), Expect = 4.370e-80 Identity = 165/377 (43.77%), Postives = 209/377 (55.44%), Query Frame = 1
Query: 913 LGRLLATAGVKFEAINVAMGNTRVAPYSWCVDAHAGLDADIISWDMTMMLASNQCGRAATGVELFIRSASVLPKRPAVLLTDASPDQDLCTNGHLRQIEKQDQGLKGDCI-PSRDLFLVYRDFGLHQISPRSLVPEVTCGDDVFARGRLYNNTEKDYQHPVGWHAGPAGHLLVSDMLFMHYAEVFLSAMERLDAARPGITAAGL-----------QHLDALSSGGRHS----------LRKALGLREVYGN----------RSGSDSSSXXXXXXXXXAAPWMGGGRG-GILPPPAWCKGWRFCDWAGNYRCADTYFPLAGKEGSRLVDMVSERTPA----------------VLNRNHSEYFAEPSRGRWVVTLNE 1896
+GRL+A AGV + AINVAMGNTR APYS+CVDAHAGLDADI+SW M +A+ C AA VELF+RS+ VLP+RPA+L+ DA DQ G L ++ +++ G C P R+L YRDFG+H I SL+ E GD+ FA LY K Y P+ WH PAGH LV+DMLFMHY ++FL A++ L+ A PG+TAA L Q + + GR S LR+A+GL N R G +M GGRG G+LPP WC G C AGNYRCA+TY+PL G +GSRL+DMV + + +R+ + A PS GRW VTLNE
Sbjct: 1 MGRLMAAAGVGYTAINVAMGNTRAAPYSYCVDAHAGLDADIVSWSFGMEIATLPCEEAAAAVELFVRSSLVLPRRPAILVLDAQADQG--AKGRLELLKHRNRRFLGYCNGPKRNLMEAYRDFGVHNIFASSLILEHAAGDERFAHEILYA-AGKHYPRPMKWHPAPAGHELVADMLFMHYGKLFLEAIDLLEQASPGLTAAELRDKNEQPGQQPQQEGSRENDGRGSSDHGTISMEALREAVGLARDNPNVFVRRPDGKPRRGGGEGEEPPIRPPPTECSYMAGGRGRGVLPPAEWCSG-AHCQGAGNYRCANTYYPLEGNQGSRLLDMVVSDSDGEGEGGGENGDPGNPVGLFSRDEEKLRASPSEGRWAVTLNE 373
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: A0A835YN73_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN73_9STRA) HSP 1 Score: 225 bits (573), Expect = 5.100e-61 Identity = 147/444 (33.11%), Postives = 215/444 (48.42%), Query Frame = 1
Query: 769 DGGTVIENKFLNAVVEQQGFLAAFTGVSTTAGHDCLFEQSYPVLLNQTLGRLLATAGVKFEAINVAMGNTRVAPYSWCVDAHAGLDADIISWDMTMMLASNQCGRAATGVELFIRSASVLPKRPAVLLTDASPDQDLCTNGHLRQ--IEKQDQGLKGDCIPSR--------DLFLVYRDFGLHQISPRSLVPEVTCGDDVFARGRLYNNTEKDYQHPVGWHAGPAGHLLVSDMLFMHYAEVFLSAMERLDAARPGITAAGLQHLDALSSGGRHSLRKALGLREVYGNRSGSDSSSXXXXXXXXXAAPWMGGGRGGILPPPAW-----CKGWRF---CDWAGNYRCADTYFPLAGKEGSRLVDM-VSERTPAVLNRNHSEYFAEPSRGRWVVTLNEESQKIKDYLEMPPPEGFHHPIDMKWVLVGDKDSGPIEFEFETLGVPSGR 2043
DGG ++ + L AVV Q+ F AFTG+S TAGHD LF QSYP++L + L +L AGV+ +N AMGNT PYS+CV+AHAG D++SW+M+M + + C R A VE +IR+A LP RP LL + D+ C + + G C+ + DL Y+D+G+H ++ +L+ TCG F + RLY + WH GP H L++++L +Y + A+ LDAA PG+T LQ L A + LR+ + L P W C RF C +G+YRC TY+P ++ S +D V++ T LNR + + W V +NE + I + + P+ P+D KWVL G +GP+ F+FE +P+GR
Sbjct: 11 DGGAAVKQRLLRAVVGQRNFTMAFTGISNTAGHDNLFAQSYPMVLERLLKPVLQLAGVELRVLNGAMGNTDFLPYSYCVEAHAGAHPDVVSWEMSMQIGNTPCTRTAELVETWIRTALALPSRPVPLLLNCQADRGRCARDREAPPTLSHTMEKAVGRCVGAERTRGTLQHDLMSWYKDYGIHSLNLETLMAAHTCGYPAFEKKRLYGG-KVGTPRTKSWHPGPGAHRLMAEVLAANYLGLLRGALSELDAAAPGVT---LQELQA----------RERRLRQCAVH-----------------------------LVPQLWQSHAPCCHRRFVLLCARSGSYRCLTTYYP--NQDASTQLDRYVTDNT--TLNRKPHFKYLPTNTSEWQVIVNEPMRGITGF-QFDNPQW---PVDRKWVLAGAASAGPLNFKFEVTELPAGR 403
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: A0A6H5JJ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ65_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.850e-11 Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 922 LLATAGVKFEAINVAMGNTRVAPYSWCVDAHAGLDADIISW 1044
++ A V + AINVAMGNTR APYS+CVDAHAGLDADI+SW
Sbjct: 8 VMPVAEVTYTAINVAMGNTRAAPYSYCVDAHAGLDADIVSW 48
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: A0A7S3ZR32_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR32_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 4.790e-9 Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 1
Query: 826 FLAAFTGVSTTAGHDCLFEQSYPVLLNQTLGRLLATAGVKFEAINVAMGNTRVAPYSWCVDAHAGLDADIIS-----WDMTMML-ASNQCGRAATGVELFIRSASVLPKRPAVLLTDASPDQDLCTNGHLRQIEKQDQGLKG 1233
F+ A G S TAGHD ++P +L + L + LA G++ E N A+G P S CV AG D D++ W + L A G +E+F+R+A +LP +PAVL + P NG R+ ++ +KG
Sbjct: 98 FVVAAFGSSVTAGHDGFGHTAWPAVLGRRLAKELAPLGIEVEVRNQAVGGAEPFPRSLCVGPIAGSDVDLVIREWEYWGFSDGLEAPGAHGGEDGAIEIFLRTAFLLPNKPAVLFLNMEP------NGEGRKTQQVRAAMKG 233
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Match: A0A7S0DVP4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DVP4_9EUKA) HSP 1 Score: 68.2 bits (165), Expect = 6.220e-8 Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 1
Query: 655 AVLKNVRSAHAEISDEILTRWGPEYGDSLLFSGGMKFSDGGTVIENKFLNAV---VEQQGFLAAFTGVSTTAGHDCLFEQSYPVLLNQTLGRLLATAGVKFEAINVAMGNTRV-APYSWCVDAHAGLDADIISWDMTMMLASNQCGRAATGVELFIRSASVLPKRPAVL 1149
AV+ N + + + + W P + +F G T+++ + L+ + VE Q F+ TG ST+AGHDC F+ SYPV + + L + + V + N AMG + ++C++ A DAD++ W+ A C + E+F R+A L +RP+V+
Sbjct: 173 AVVDNTLNEIEKTRQRLCSLW-PNNTNCEIFKKGDTSDIDNTLLQTRMLHRILNEVEAQ-FVLYVTGSSTSAGHDCHFDYSYPVQMERYLKPIFGSVDVNLKVYNEAMGGWDYRSGANYCMNNIAAKDADVVFWEWGCF-APTSCSQ-----EVFARAALSLEQRPSVV 333 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1029.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1029.426.1 >prot_S-firma_F_contig1029.426.1 ID=prot_S-firma_F_contig1029.426.1|Name=mRNA_S-firma_F_contig1029.426.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=706bp MWGEIAALWVGSVCFFSGRCVATTGRSHRDELAIARRRHAPLAEARHNSEback to top mRNA from alignment at S-firma_F_contig1029:10918..16003- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1029.426.1 ID=mRNA_S-firma_F_contig1029.426.1|Name=mRNA_S-firma_F_contig1029.426.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5086bp|location=Sequence derived from alignment at S-firma_F_contig1029:10918..16003- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1029:10918..16003- >mRNA_S-firma_F_contig1029.426.1 ID=mRNA_S-firma_F_contig1029.426.1|Name=mRNA_S-firma_F_contig1029.426.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4236bp|location=Sequence derived from alignment at S-firma_F_contig1029:10918..16003- (Sphaerotrichia firma ET2_F female)back to top |