mRNA_S-firma_F_contig10289.422.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10289.422.1
Unique NamemRNA_S-firma_F_contig10289.422.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10289.422.1 vs. uniprot
Match: A0A7S2B5D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5D8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.310e-9
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:   34 GFLLGEEGRLSDAARAFQAAIALGGDHPALSQLWFNLGFTHHRGGDAPTALAAFKQSVATAASPSDAMQPLIKCAFISKQMGDLSATVGFLQRALEIAPGGGSLWGYLGETLNNLKRWNEAVAAYTKAV 420
            G  + + GR+  A+  F+ A  L    P  + + FN GF   +      AL   ++ V    +  +A    IKCA + +  GD +  V  L+ A+ + P   + + YLG+TLNNLKRWNEAV  Y  A+
Sbjct:   27 GIRMAQNGRVDQASEVFERAAVLA---PEDANVMFNAGFAMMQLQRPRDALRYMQKCVEINPNFREAH---IKCAQLLRDQGDPARVVNHLRAAIRLEPSKPNAYLYLGDTLNNLKRWNEAVGVYETAI 149
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BLAST of mRNA_S-firma_F_contig10289.422.1 vs. uniprot
Match: A0A543E7J5_9GAMM (Putative O-linked N-acetylglucosamine transferase (SPINDLY family) n=2 Tax=unclassified Pseudoxanthomonas TaxID=2645906 RepID=A0A543E7J5_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 1.100e-7
Identity = 48/135 (35.56%), Postives = 64/135 (47.41%), Query Frame = 1 
Query:   28 DLGFLLGEEGRLSDAARAFQAAIALGGDHPALSQLWFNLGFTHHRGGDAPTALAAFKQSVATAASPSDAMQPLIKCAFISKQMGDLSATVGFLQRALEIAPGGGSLWGYLGETLNNLKRWNEAVAAYTKAVDADP 432
            D   LL   G   DAA+       L    P  +Q+   L      GG    AL A  +  AT   P DAM  ++K + I  + G+       L+RAL +APG G  W YLGE+L+  +RW EA+ AYT+A    P
Sbjct:   39 DYALLLMHTGHARDAAKMLTDVRRLA---PGDAQVLLALAACLRAGGAIEDALQAADE--ATRRLPHDAMAWMLKGS-IDVRAGEYPRAETSLRRALSLAPGFGEAWHYLGESLHQQQRWEEAIHAYTRASAEQP 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10289.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2B5D8_9STRA5.310e-933.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A543E7J5_9GAMM1.100e-735.56Putative O-linked N-acetylglucosamine transferase ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10289contigS-firma_F_contig10289:91..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1197906.CAJQ02000003_gene3146
Preferred nameMA20_22060
PFAMsMethyltransf_11,Methyltransf_23,Methyltransf_25,TPR_16,TPR_19,TPR_2,TPR_8
Max annot lvl28211|Alphaproteobacteria
Evalue9.5e-05
EggNOG OGsCOG4976@1|root,COG4976@2|Bacteria,1RAIT@1224|Proteobacteria,2U5NY@28211|Alphaproteobacteria,3JQXQ@41294|Bradyrhizobiaceae
DescriptionMethyltransferase domain
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size471
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.131099-CDS-S-firma_F_contig10289:90..5611622815559.131099-CDS-S-firma_F_contig10289:90..561Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10289 91..561 -
1696949415.1646996-CDS-S-firma_F_contig10289:90..5611696949415.1646996-CDS-S-firma_F_contig10289:90..561Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10289 91..561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.1440215-UTR-S-firma_F_contig10289:561..5731622815559.1440215-UTR-S-firma_F_contig10289:561..573Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10289 562..573 -
1696949415.1795464-UTR-S-firma_F_contig10289:561..5731696949415.1795464-UTR-S-firma_F_contig10289:561..573Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10289 562..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10289.422.1prot_S-firma_F_contig10289.422.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10289 91..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10289.422.1

>prot_S-firma_F_contig10289.422.1 ID=prot_S-firma_F_contig10289.422.1|Name=mRNA_S-firma_F_contig10289.422.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=157bp
MFIHSDLGFLLGEEGRLSDAARAFQAAIALGGDHPALSQLWFNLGFTHHR
GGDAPTALAAFKQSVATAASPSDAMQPLIKCAFISKQMGDLSATVGFLQR
ALEIAPGGGSLWGYLGETLNNLKRWNEAVAAYTKAVDADPRNGELRLQLG
DTLMNM*
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mRNA from alignment at S-firma_F_contig10289:91..573-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10289.422.1 ID=mRNA_S-firma_F_contig10289.422.1|Name=mRNA_S-firma_F_contig10289.422.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=483bp|location=Sequence derived from alignment at S-firma_F_contig10289:91..573- (Sphaerotrichia firma ET2_F female)
CCCTTCCCTCAGATGTTCATCCACAGCGACCTGGGGTTCTTGTTGGGGGA
GGAGGGCCGCCTCAGCGACGCCGCCCGCGCGTTCCAGGCAGCAATCGCGC
TGGGGGGCGACCACCCGGCGCTTTCCCAGCTGTGGTTTAACCTGGGGTTC
ACACACCACAGGGGCGGGGATGCGCCTACCGCGCTGGCGGCGTTTAAGCA
GTCCGTGGCGACGGCGGCCAGCCCCAGCGACGCCATGCAGCCCCTCATCA
AATGCGCGTTCATCAGCAAGCAAATGGGGGACTTGTCCGCGACAGTGGGC
TTCCTGCAGCGGGCGCTGGAGATTGCGCCGGGGGGGGGCAGCCTGTGGGG
GTACCTCGGTGAGACCTTGAACAACTTGAAGCGGTGGAATGAGGCCGTGG
CCGCGTACACAAAGGCCGTCGATGCCGACCCTCGCAACGGCGAGCTCCGC
CTGCAGCTTGGCGACACGCTGATGAACATGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10289:91..573-

>mRNA_S-firma_F_contig10289.422.1 ID=mRNA_S-firma_F_contig10289.422.1|Name=mRNA_S-firma_F_contig10289.422.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=942bp|location=Sequence derived from alignment at S-firma_F_contig10289:91..573- (Sphaerotrichia firma ET2_F female)
ATGTTCATCCACAGCGACCTGGGGTTCTTGTTGGGGGAGGAGGGCCGCCT
CAGCGACGCCGCCCGCGCGTTCCAGGCAGCAATCGCGCTGGGGGGCGACC
ACCCGGCGCTTTCCCAGCTGTGGTTTAACCTGGGGTTCACACACCACAGG
GGCGGGGATGCGCCTACCGCGCTGGCGGCGTTTAAGCAGTCCGTGGCGAC
GGCGGCCAGCCCCAGCGACGCCATGCAGCCCCTCATCAAATGCGCGTTCA
TCAGCAAGCAAATGGGGGACTTGTCCGCGACAGTGGGCTTCCTGCAGCGG
GCGCTGGAGATTGCGCCGGGGGGGGGCAGCCTGTGGGGGTACCTCGGTGA
GACCTTGAACAACTTGAAGCGGTGGAATGAGGCCGTGGCCGCGTACACAA
AGGCCGTCGATGCCGACCCTCGCAACGGCGAGCTCCGCCTGCAGCTTGGC
GACACGCTGATGAACATGTAGATGTTCATCCACAGCGACCTGGGGTTCTT
GTTGGGGGAGGAGGGCCGCCTCAGCGACGCCGCCCGCGCGTTCCAGGCAG
CAATCGCGCTGGGGGGCGACCACCCGGCGCTTTCCCAGCTGTGGTTTAAC
CTGGGGTTCACACACCACAGGGGCGGGGATGCGCCTACCGCGCTGGCGGC
GTTTAAGCAGTCCGTGGCGACGGCGGCCAGCCCCAGCGACGCCATGCAGC
CCCTCATCAAATGCGCGTTCATCAGCAAGCAAATGGGGGACTTGTCCGCG
ACAGTGGGCTTCCTGCAGCGGGCGCTGGAGATTGCGCCGGGGGGGGGCAG
CCTGTGGGGGTACCTCGGTGAGACCTTGAACAACTTGAAGCGGTGGAATG
AGGCCGTGGCCGCGTACACAAAGGCCGTCGATGCCGACCCTCGCAACGGC
GAGCTCCGCCTGCAGCTTGGCGACACGCTGATGAACATGTAG
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