mRNA_S-firma_F_contig10286.421.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A6H5L7N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N2_9PHAE) HSP 1 Score: 332 bits (850), Expect = 4.100e-105 Identity = 176/250 (70.40%), Postives = 193/250 (77.20%), Query Frame = 1
Query: 7 ETKEVTRKAAGLGGGGASGMGAGGPAGGTGPPHPLSRNNSMQRSSIMKGLEGGKLTAAVQHAAATAESRHLCFDQ------------MRRMEDVYAKRVTPGCVKEGYLFKKSSSKMLQHWNRRWFVLDGSKLYYLKDDPSRQKMLICDVMLCTVKDVHSADALYCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQLTGSTPLPGDGXXXXXXXXXXXXXXXXMGHFGGYTEDTSDEEGYRALSN 720
ET EVTR++A G +GMG GG P PLSR NS+QR+S+MKGLEGGKLTAAV+ AAA +ESRHLCF+Q +RRMEDVY +R TPGCVKEGYLFKKSSSKMLQHWNRRWFVLDGSKLYYLK+DPSRQKMLICDVMLCTVK+VHS+DALYCFEVFSANRRSYMLQAEGPDEL SWVTCIRRTIESQLTGSTPLPGD G Y +DTSDEEGYR+L+N
Sbjct: 307 ETLEVTRRSAVPG----AGMG-----GGAAAPSPLSRTNSLQRTSMMKGLEGGKLTAAVRQAAAASESRHLCFEQARWGYAEGTSLGIRRMEDVYTRRATPGCVKEGYLFKKSSSKMLQHWNRRWFVLDGSKLYYLKNDPSRQKMLICDVMLCTVKEVHSSDALYCFEVFSANRRSYMLQAEGPDELTSWVTCIRRTIESQLTGSTPLPGDDGGGGTPTGRLN-----SGAGTSYADDTSDEEGYRSLAN 542
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: D8LRY2_ECTSI (ArfGAP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY2_ECTSI) HSP 1 Score: 326 bits (835), Expect = 3.490e-103 Identity = 161/212 (75.94%), Postives = 177/212 (83.49%), Query Frame = 1
Query: 85 GGTGPPHPLSRNNSMQRSSIMKGLEGGKLTAAVQHAAATAESRHLCFDQMRRMEDVYAKRVTPGCVKEGYLFKKSSSKMLQHWNRRWFVLDGSKLYYLKDDPSRQKMLICDVMLCTVKDVHSADALYCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQLTGSTPLPGDGXXXXXXXXXXXXXXXXMGHFGGYTEDTSDEEGYRALSN 720
GGT P PLSR NS+QR+S+MKGLEGGKLTAAV+ AAA +ESRHLCF+Q+RRMEDVY +R TPGCVKEGYLFKKSSSKMLQHWNRRWFVLDGSKLYYLK+D SRQKM I DVMLCTVK+VHS+DALYCFEVFSANRRSYMLQAEGP+EL SWVTCIRRTIESQLTGSTPLPGD G Y +DTSDE+GYR+L+N
Sbjct: 264 GGTATPSPLSRTNSLQRTSMMKGLEGGKLTAAVRQAAAASESRHLCFEQIRRMEDVYTRRATPGCVKEGYLFKKSSSKMLQHWNRRWFVLDGSKLYYLKNDSSRQKMFIWDVMLCTVKEVHSSDALYCFEVFSANRRSYMLQAEGPEELTSWVTCIRRTIESQLTGSTPLPGDDGGGGTPTGRPN-----SGTGTSYADDTSDEDGYRSLAN 470
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A7S1TUP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUP7_9STRA) HSP 1 Score: 126 bits (316), Expect = 5.730e-32 Identity = 73/170 (42.94%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 166 KLTAAVQHA------AATAESRHLCFDQMRRMEDVYAK--RVTPGC--VKEGYLFKKSSSKMLQ-HWNRRWFVLDGSKLYYLKDDPSRQ-----------------KMLICDVMLCTVKDVHSADALYCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQLTGSTP 591
K TAA A +A AE + F+ + +++ A ++ P +KEG+LFK+SSS M+ HWNRRWF LDGS+LYYL+D +R+ ++L+CD +L TV+ V D +CFE+ SANRRSYMLQAEG DE+ SWV IR I QL P
Sbjct: 17 KNTAAADRAELVAKVSAEAEDKFGTFETAKSLKEFLAPLPQLNPNASYLKEGWLFKRSSSAMMSNHWNRRWFQLDGSRLYYLRDRINREAKDDEDVKGGDGGDKGDRVLVCDCLLATVRGVADPDMRHCFEILSANRRSYMLQAEGQDEMASWVDAIRNCIAQQLAVGVP 186
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A7R9UG56_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG56_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.990e-29 Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = 1
Query: 160 GGKLTAA----VQHAAATAESRHLCFDQMRRMEDVYA---KRVTPGCVKEGYLFKKSSSKMLQ-HWNRRWFVLDGSKLYYLKDDPSRQ------------------KMLICDVMLCTVKDVHSADAL-YCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQL-TGSTPLPG 600
GGK +A + +A AE F + ++++ +A + ++EG+L+KKSSS ++ HWNRRWF+LDGS+LYYL+D R+ ++L+CD +L TV++VH L +CFE+ SANRRSYMLQAEGPDEL +WV IR I QL TG + G
Sbjct: 423 GGKASAERAQLIAKHSAEAEEHFQTFARAKKLKTYFAPVPRSSDKKILREGWLYKKSSSSVMSNHWNRRWFLLDGSRLYYLRDKAGRETKEDEDSSGKHDEGEKGDRVLVCDCLLATVREVHQNPELRFCFEILSANRRSYMLQAEGPDELAAWVEAIRSCIARQLATGESETRG 597
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A7S1ZFW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZFW7_9STRA) HSP 1 Score: 108 bits (271), Expect = 4.490e-23 Identity = 65/180 (36.11%), Postives = 94/180 (52.22%), Query Frame = 1
Query: 163 GKLTAAVQHAAATAESRHLCFDQMRRMEDV------------------YAKRVTPGCVKEGYLFKKSSSKM-LQHWNRRWFVLDGSKLYYLK----DDPSR------QKMLICDVMLCTVKDV-------HSADALYCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQLT-GSTP 591
G + A+++ T + + DQ +E++ Y + TPG + EG+L+KKSSS+M + WN+RWF+LD +YYLK D SR +++ +CD++LCTV++ +S +CFE+ S N R YMLQA GP E R WV IR IE QL G P
Sbjct: 426 GIIADAIKNGQGTGLGQSMIEDQPTSLEEIEKIVRLWDLPRLLAESTLYRRDSTPGVLVEGWLYKKSSSRMSINTWNKRWFILDKGGVYYLKGGLLSDSSRGQNDSLERVKVCDIVLCTVREYVERLKNNNSGGLRFCFEIISPNSRPYMLQACGPQEFRIWVDSIRSAIEKQLVQGGVP 605
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A7S2PM48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PM48_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.480e-22 Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 250 VYAKRVTPGCVKEGYLFKKSSSKM-LQHWNRRWFVLDGSKLYYLK---------DDPSRQKMLICDVMLCTVKDVHSADAL---YCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQL 576
VY ++ G V EG+L+KKSS+++ + W+RRWF++D + +YYLK + S +++ +CD++LCTV+DV L +CFE+ SAN R ++LQA GP + WV IR+ IE L
Sbjct: 68 VYQRQPENGIVIEGWLYKKSSARISINTWSRRWFIVDETSIYYLKREGMMGGAFSNSSPERVKVCDIVLCTVRDVQPKGDLGNRFCFEIMSANNRPFLLQACGPQDQELWVNSIRKCIEKNL 189
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: K0TI75_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI75_THAOC) HSP 1 Score: 105 bits (261), Expect = 9.500e-22 Identity = 51/128 (39.84%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 250 VYAKRVTPGCVKEGYLFKKSSSKM-LQHWNRRWFVLDGSKLYYLK-----------DDPSR--QKMLICDVMLCTVKDVH-----SADALYCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQL 576
+Y ++ T G + EG+L+KKS++++ L W RRWF+LDG +YYLK D+P+ ++ +CD++LCTV++++ + + +CFE+ S N +SY+LQA GPD+ + WV IR IE QL
Sbjct: 503 LYQRKPTAGIIVEGWLYKKSTNRLSLNQWARRWFMLDGKGVYYLKGGSESKKGESKDNPNEWMDRIKVCDILLCTVREINMKAKGNPNLRFCFEIISPNSKSYLLQACGPDDYKMWVDGIRSCIEQQL 630
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A2R5GGS8_9STRA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGS8_9STRA) HSP 1 Score: 100 bits (248), Expect = 5.540e-20 Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 280 VKEGYLFKKSSSKMLQHWNRRWFVLDGSKLYYLKD-DPSRQKMLICDVMLCTVKDVHSA---DALYCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQLT 579
VKEGYL +K SSKM + W RRWFVL G KL+Y++D D Q + IC+ M TV++ +A D +CFE+ S NRR+Y++QAE +R W+ IR + E +T
Sbjct: 1064 VKEGYL-RKRSSKMRKSWKRRWFVLQGGKLFYIRDYDVCDQPVFICECMFATVREADAAVTNDMSFCFEILSPNRRTYVMQAENEISMREWIDTIRTSTERLIT 1166
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A7S1Z229_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z229_TRICV) HSP 1 Score: 99.4 bits (246), Expect = 5.640e-20 Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 1
Query: 250 VYAKRVTPGCVKEGYLFKKSSSKM-LQHWNRRWFVLDGSKLYYLK-----DDPSRQ------------KMLICDVMLCTVKDVHS----------ADALYCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQLT 579
++ + P + EG+L+KK+SS++ + WN+RWFVLD S YYLK ++ +RQ ++ +CDV+LCTV++V + +CFE+FS N SYMLQA GP E R WV IR +E QLT
Sbjct: 175 LFTRDPNPSVIAEGWLYKKASSRISMNSWNKRWFVLDRSCFYYLKGGVLGENGNRQSGSGGTSGGALERIKVCDVVLCTVREVSEKPGKGVGGGGSPVRFCFELFSPNSPSYMLQASGPAEYRMWVDGIRSCMERQLT 312
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Match: A0A4D9D8E4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8E4_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.200e-19 Identity = 59/165 (35.76%), Postives = 84/165 (50.91%), Query Frame = 1
Query: 205 ESRHLCFDQMRRMEDVYAKRVTPGCVKEGYLFKKSSSKMLQH------WNRRWFVLDGSKLYYLKD---DPSRQKM------LICDVMLCTVKDV----HSADAL---------------YCFEVFSANRRSYMLQAEGPDELRSWVTCIRRTIESQLTGSTPLP 597
+ R+ FD + +Y R PG E YL + +K L W RRWFVL+GS LYY+++ DP + M L+CDV+L ++++V H +L YC E+FSANR+ +LQAEGP ELR+W+ RR +E L G +P
Sbjct: 379 DRRYGVFDVQHSLRTLYQPRQAPGVHHESYLHMQVRAKGLASTTASHVWIRRWFVLEGSSLYYVRESSHDPVGESMEGSERSLVCDVVLSSIREVPLLGHGTKSLGAGNATEAQTSSAVPYCLEIFSANRKRLILQAEGPKELRAWLEAFRRRLERLLVGGGGIP 543 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10286.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10286.421.1 >prot_S-firma_F_contig10286.421.1 ID=prot_S-firma_F_contig10286.421.1|Name=mRNA_S-firma_F_contig10286.421.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=275bp MQETKEVTRKAAGLGGGGASGMGAGGPAGGTGPPHPLSRNNSMQRSSIMKback to top mRNA from alignment at S-firma_F_contig10286:605..5180+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10286.421.1 ID=mRNA_S-firma_F_contig10286.421.1|Name=mRNA_S-firma_F_contig10286.421.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4576bp|location=Sequence derived from alignment at S-firma_F_contig10286:605..5180+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10286:605..5180+ >mRNA_S-firma_F_contig10286.421.1 ID=mRNA_S-firma_F_contig10286.421.1|Name=mRNA_S-firma_F_contig10286.421.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1650bp|location=Sequence derived from alignment at S-firma_F_contig10286:605..5180+ (Sphaerotrichia firma ET2_F female)back to top |