mRNA_S-firma_F_contig10285.420.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10285.420.1
Unique NamemRNA_S-firma_F_contig10285.420.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10285.420.1 vs. uniprot
Match: D7G0G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G6_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 5.470e-45
Identity = 98/171 (57.31%), Postives = 115/171 (67.25%), Query Frame = 1 
Query:    1 MAAPSSTV-PGSAASNSGPNPTTTYADALKYAKEVVAEAATLLQEMPAEVVPIVGNVCKTFLAFKQLVEKAESNKGALSTLLQMCDIVVKHVLDARTDRPGLPKSGFTQLGEHVCKAEEVAKLCNGVRKRDRAKRFVLARKISQDIAAIREDVLAFCALNNIAVAVDTHVS 510
            MAAPSST  P        P+P+    DAL Y +EVVA AA LLQEMPAEVVPI+G VCKTFLAF+QL E A+SN+ ALS L  +C  VV  VLD+R +RP + K GF QL E V KA EVAKLCNG   R    R + ARKI  DIA IR DVLA+CA+ N+ +A D H +
Sbjct:    1 MAAPSSTATPAXXXXXXXPSPSKAIVDALVYVQEVVAGAAMLLQEMPAEVVPILGTVCKTFLAFEQLAETAKSNREALSMLQDLCKSVVNGVLDSRKERPSILKEGFAQLQEQVDKAVEVAKLCNGSCMR----RLLWARKIRNDIAGIRADVLAYCAVINLVLADDIHAN 167
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BLAST of mRNA_S-firma_F_contig10285.420.1 vs. uniprot
Match: A0A6H5KQS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS9_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 7.940e-37
Identity = 87/178 (48.88%), Postives = 112/178 (62.92%), Query Frame = 1 
Query:    1 MAAPSSTVPGSAASNSGPNPTTTYADALKYAKEVVAEAATLLQEMPA----------EVVPIVGNVCKTFLAFKQLVEKAESNKGALSTLLQMCDIVVKHVLDARTDRPGLPKSGFTQLGEHVCKAEEVAKLCNGVRKRDRAKRFVLARKISQDIAAIREDVLAFCALNNIAVAVDTH 504
            MAAPS+TV         P+PT   A    Y +EV+  AAT  +E+PA          E  P+VG VCKTFLAF+QLVE A SNK  L+TL ++C +VV  VLD R+DR GL K  F  L +HV KAEEVA+LCN      R KR VLAR+I +DI ++  +V+ FCA NN+A++ DT+
Sbjct:    1 MAAPSNTV-------RVPSPTNNEASFFTYLREVLLGAATFSEEVPAANASEAAHLLEEFPVVGTVCKTFLAFEQLVETARSNKDDLATLRELCCVVVAGVLDKRSDRSGLSKR-FEALEKHVNKAEEVAQLCNSS---GRVKRKVLARRICEDIVSVMNNVVEFCAANNVAISNDTN 167
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BLAST of mRNA_S-firma_F_contig10285.420.1 vs. uniprot
Match: D8LRZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ9_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.330e-36
Identity = 85/178 (47.75%), Postives = 110/178 (61.80%), Query Frame = 1 
Query:    1 MAAPSSTVPGSAASNSGPNPTTTYADALKYAKEVVAEAATLLQEMPAEVV----------PIVGNVCKTFLAFKQLVEKAESNKGALSTLLQMCDIVVKHVLDARTDRPGLPKSGFTQLGEHVCKAEEVAKLCNGVRKRDRAKRFVLARKISQDIAAIREDVLAFCALNNIAVAVDTH 504
            MAAPS+TVP        P+   +      Y +EV++ AAT  +E+P  V           P+VG VCKTFLAF+QL E A SNK  L+TL ++C +VV  VLD R+DR GL K GF  L +HV KAEEVA+LCN      R KR VLAR+I +DI ++  DV+ FCA NN+ ++ DTH
Sbjct:    1 MAAPSNTVP-------VPSQINSEVSFFAYLREVLSGAATSSEEVPVAVALEAAHLVEEFPVVGIVCKTFLAFEQLAETARSNKDDLATLRELCCVVVTEVLDKRSDRSGLSK-GFEALEKHVNKAEEVAQLCNSG---GRLKRQVLARRICEDIVSVMNDVVEFCAANNVPISNDTH 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10285.420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0G6_ECTSI5.470e-4557.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQS9_9PHAE7.940e-3748.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ9_ECTSI2.330e-3647.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10285contigS-firma_F_contig10285:283..792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003240.1
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.941776-CDS-S-firma_F_contig10285:282..7921622815558.941776-CDS-S-firma_F_contig10285:282..792Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10285 283..792 -
1696949415.0529132-CDS-S-firma_F_contig10285:282..7921696949415.0529132-CDS-S-firma_F_contig10285:282..792Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10285 283..792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10285.420.1prot_S-firma_F_contig10285.420.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10285 283..792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10285.420.1

>prot_S-firma_F_contig10285.420.1 ID=prot_S-firma_F_contig10285.420.1|Name=mRNA_S-firma_F_contig10285.420.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=170bp
MAAPSSTVPGSAASNSGPNPTTTYADALKYAKEVVAEAATLLQEMPAEVV
PIVGNVCKTFLAFKQLVEKAESNKGALSTLLQMCDIVVKHVLDARTDRPG
LPKSGFTQLGEHVCKAEEVAKLCNGVRKRDRAKRFVLARKISQDIAAIRE
DVLAFCALNNIAVAVDTHVS
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mRNA from alignment at S-firma_F_contig10285:283..792-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10285.420.1 ID=mRNA_S-firma_F_contig10285.420.1|Name=mRNA_S-firma_F_contig10285.420.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=510bp|location=Sequence derived from alignment at S-firma_F_contig10285:283..792- (Sphaerotrichia firma ET2_F female)
ATGGCGGCACCCTCGAGCACGGTACCGGGTTCTGCTGCTTCCAACTCGGG
GCCTAACCCAACCACGACCTACGCTGATGCCTTGAAATACGCGAAAGAGG
TGGTGGCAGAAGCGGCCACATTGCTGCAAGAGATGCCTGCGGAGGTTGTG
CCCATCGTGGGGAATGTGTGCAAGACGTTCTTGGCGTTCAAGCAGCTAGT
GGAAAAAGCCGAGAGCAACAAAGGGGCGCTCTCCACTTTGCTTCAAATGT
GCGACATTGTGGTCAAACATGTCCTGGACGCACGAACGGACCGCCCGGGC
CTTCCGAAATCTGGGTTTACGCAGCTGGGTGAGCACGTCTGCAAAGCGGA
GGAGGTCGCCAAGCTGTGCAACGGAGTCCGCAAGAGGGACCGGGCGAAAC
GGTTCGTCTTGGCTCGCAAGATCAGCCAAGACATCGCCGCTATCAGGGAG
GACGTCCTGGCGTTTTGCGCTTTAAACAACATCGCCGTTGCCGTTGACAC
CCATGTGAGT
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Coding sequence (CDS) from alignment at S-firma_F_contig10285:283..792-

>mRNA_S-firma_F_contig10285.420.1 ID=mRNA_S-firma_F_contig10285.420.1|Name=mRNA_S-firma_F_contig10285.420.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1020bp|location=Sequence derived from alignment at S-firma_F_contig10285:283..792- (Sphaerotrichia firma ET2_F female)
ATGGCGGCACCCTCGAGCACGGTACCGGGTTCTGCTGCTTCCAACTCGGG
GCCTAACCCAACCACGACCTACGCTGATGCCTTGAAATACGCGAAAGAGG
TGGTGGCAGAAGCGGCCACATTGCTGCAAGAGATGCCTGCGGAGGTTGTG
CCCATCGTGGGGAATGTGTGCAAGACGTTCTTGGCGTTCAAGCAGCTAGT
GGAAAAAGCCGAGAGCAACAAAGGGGCGCTCTCCACTTTGCTTCAAATGT
GCGACATTGTGGTCAAACATGTCCTGGACGCACGAACGGACCGCCCGGGC
CTTCCGAAATCTGGGTTTACGCAGCTGGGTGAGCACGTCTGCAAAGCGGA
GGAGGTCGCCAAGCTGTGCAACGGAGTCCGCAAGAGGGACCGGGCGAAAC
GGTTCGTCTTGGCTCGCAAGATCAGCCAAGACATCGCCGCTATCAGGGAG
GACGTCCTGGCGTTTTGCGCTTTAAACAACATCGCCGTTGCCGTTGACAC
CCATGTGAGTATGGCGGCACCCTCGAGCACGGTACCGGGTTCTGCTGCTT
CCAACTCGGGGCCTAACCCAACCACGACCTACGCTGATGCCTTGAAATAC
GCGAAAGAGGTGGTGGCAGAAGCGGCCACATTGCTGCAAGAGATGCCTGC
GGAGGTTGTGCCCATCGTGGGGAATGTGTGCAAGACGTTCTTGGCGTTCA
AGCAGCTAGTGGAAAAAGCCGAGAGCAACAAAGGGGCGCTCTCCACTTTG
CTTCAAATGTGCGACATTGTGGTCAAACATGTCCTGGACGCACGAACGGA
CCGCCCGGGCCTTCCGAAATCTGGGTTTACGCAGCTGGGTGAGCACGTCT
GCAAAGCGGAGGAGGTCGCCAAGCTGTGCAACGGAGTCCGCAAGAGGGAC
CGGGCGAAACGGTTCGTCTTGGCTCGCAAGATCAGCCAAGACATCGCCGC
TATCAGGGAGGACGTCCTGGCGTTTTGCGCTTTAAACAACATCGCCGTTG
CCGTTGACACCCATGTGAGT
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