mRNA_S-firma_F_contig10281.417.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10281.417.1
Unique NamemRNA_S-firma_F_contig10281.417.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10281.417.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 4.700e-58
Identity = 101/156 (64.74%), Postives = 112/156 (71.79%), Query Frame = 1 
Query:    1 AALGRAGWVSGGXXXXXXXXXXXXXXXXXRSSSRARCHPLNQTAHSFFTDELECCWRCKGCGQFTRSCACSKGIEEYVRRHHGRANT-FESFACRNSRCIYCNPPGLPIYMAEWAVCSPRFKLKSGHPPPNLHGKVKKQALPPRWEREAISSGSAT 465
            AA  RAGW  G                   +S R+RCHPLN+TAHSFFTDELEC WRCKGC Q+TRSC CSKGI EY+RR   RA T FESFACRNS CIYC PPGLP+YMAEWAV S RFKLK G PPP L G+++KQA+PPRWEREAI  G A+
Sbjct:  365 AASARAGWYPGARGRDGGRGGSGADS----TSPRSRCHPLNRTAHSFFTDELECPWRCKGCRQYTRSCNCSKGIAEYIRRQGERATTRFESFACRNSHCIYCKPPGLPLYMAEWAVSSARFKLKGGQPPPTL-GRIQKQAVPPRWEREAIPDGRAS 515
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BLAST of mRNA_S-firma_F_contig10281.417.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 8.720e-58
Identity = 100/156 (64.10%), Postives = 111/156 (71.15%), Query Frame = 1 
Query:    1 AALGRAGWVSGGXXXXXXXXXXXXXXXXXRSSSRARCHPLNQTAHSFFTDELECCWRCKGCGQFTRSCACSKGIEEYVRRHHGRANT-FESFACRNSRCIYCNPPGLPIYMAEWAVCSPRFKLKSGHPPPNLHGKVKKQALPPRWEREAISSGSAT 465
            AA  RAGW  G                   +S R+RCHPLN+TAHSFFTDELEC WRCKGC Q+TRSC CSKGI EY+RR   R  T FESFACRNS CIYC PPGLP+YMAEWAV S RFKLK G PPP L G+++KQA+PPRWEREAI  G A+
Sbjct:  727 AASARAGWYPGARGRDGGRAGSGADS----ASPRSRCHPLNRTAHSFFTDELECPWRCKGCSQYTRSCNCSKGIAEYIRRQGERVTTRFESFACRNSHCIYCKPPGLPLYMAEWAVSSARFKLKGGQPPPTL-GRIQKQAVPPRWEREAIPDGRAS 877
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10281.417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6J0_ECTSI4.700e-5864.74CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LAU8_9PHAE8.720e-5864.10CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10281contigS-firma_F_contig10281:2601..5293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G6J0
PFAMsAnk,Hist_deacetyl
Max annot lvl2759|Eukaryota
Evalue7.7e-59
EggNOG OGsCOG0123@1|root,KOG1343@2759|Eukaryota
DescriptionNAD-dependent histone deacetylase activity (H3-K14 specific)
COG categoryK
Hectar predicted targeting categoryother localisation
Exons5
Model size504
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10281.417.1prot_S-firma_F_contig10281.417.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10281 2602..5293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.772959-CDS-S-firma_F_contig10281:2601..26641622815558.772959-CDS-S-firma_F_contig10281:2601..2664Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 2602..2664 -
1696949414.9561195-CDS-S-firma_F_contig10281:2601..26641696949414.9561195-CDS-S-firma_F_contig10281:2601..2664Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 2602..2664 -
1622815558.7844777-CDS-S-firma_F_contig10281:3197..32791622815558.7844777-CDS-S-firma_F_contig10281:3197..3279Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 3198..3279 -
1696949414.9667091-CDS-S-firma_F_contig10281:3197..32791696949414.9667091-CDS-S-firma_F_contig10281:3197..3279Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 3198..3279 -
1622815558.7964826-CDS-S-firma_F_contig10281:3926..40221622815558.7964826-CDS-S-firma_F_contig10281:3926..4022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 3927..4022 -
1696949414.97571-CDS-S-firma_F_contig10281:3926..40221696949414.97571-CDS-S-firma_F_contig10281:3926..4022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 3927..4022 -
1622815558.8104784-CDS-S-firma_F_contig10281:4325..44841622815558.8104784-CDS-S-firma_F_contig10281:4325..4484Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 4326..4484 -
1696949414.986309-CDS-S-firma_F_contig10281:4325..44841696949414.986309-CDS-S-firma_F_contig10281:4325..4484Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 4326..4484 -
1622815558.8228645-CDS-S-firma_F_contig10281:5192..52931622815558.8228645-CDS-S-firma_F_contig10281:5192..5293Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 5193..5293 -
1696949414.9996357-CDS-S-firma_F_contig10281:5192..52931696949414.9996357-CDS-S-firma_F_contig10281:5192..5293Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 5193..5293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10281.417.1

>prot_S-firma_F_contig10281.417.1 ID=prot_S-firma_F_contig10281.417.1|Name=mRNA_S-firma_F_contig10281.417.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
AALGRAGWVSGGGWGGGGGVRGGAGGYGGRSSSRARCHPLNQTAHSFFTD
ELECCWRCKGCGQFTRSCACSKGIEEYVRRHHGRANTFESFACRNSRCIY
CNPPGLPIYMAEWAVCSPRFKLKSGHPPPNLHGKVKKQALPPRWEREAIS
SGSATGRGATRHDEGAA
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mRNA from alignment at S-firma_F_contig10281:2601..5293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10281.417.1 ID=mRNA_S-firma_F_contig10281.417.1|Name=mRNA_S-firma_F_contig10281.417.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2693bp|location=Sequence derived from alignment at S-firma_F_contig10281:2601..5293- (Sphaerotrichia firma ET2_F female)
GCGGCGCTCGGGAGGGCGGGGTGGGTGTCTGGGGGGGGGTGGGGCGGAGG
TGGCGGAGTAAGAGGCGGAGCGGGCGGCTACGGCGGCCGTTCGAGCTCGA
GGTGTGTGTGTGTGTGTGTGTATGTGTGTTTGTGTTTCGCGGTCTGTCTG
TCTGTCTGTCTGTCCTGAGTGGTTTTTCGTCGGTTTTGTGAGGGGGAGGG
GAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGGGAGGGCGGTGGTC
CCGCAAGTAGATATATACACGTGCGCAGCATACACGAGGCTGCTTGTGTC
GTGTTTTTTTTGCGTTGGAGTGCACACCAGCAGGCTTTTCATCGTGTGCA
TCATCCAAACCGTGACAGACGTCTCTGTGTGCAGGGGGAGGGGACTGTGT
CGGGAAGGCGAGGCGAGGGAGGGGGCGTCGTGTTTCGAGCTTGAGTCGTG
TCGTGCGCGCTGTTGTCTTCATTGCACGTGGGTGATTGTCTTTTTCGCGG
GCGATGGATGCATTCACAGCAGTACCGATCTCTTAAGCCGAGGTCGAAAG
CCGCGGAGCGGAAGCTTTTGGTTTTGTTTGGTTGGACTCTTGGTAGGCGA
CGCCGTGGCAACGGTATAAGTAACACCGTGAAACCCGTGCGGTGCGACCA
AGCGCCATCAATGCCCCCCCCCCCCTATGCGTCACAGCACATATTGTAAT
CGCAACCGACAACAAGACCGGGTTCGGTAGCCTGAAAACCGAAAACCTCA
CCGCCCGCGCGCCGCACGTCAACAATGCCCCCCCCCCGGCCCACCGCCTT
TTGACGCAGGGCGCGCTGCCACCCCCTGAACCAGACGGCGCACTCGTTCT
TCACGGACGAGCTGGAGTGCTGCTGGAGGTGCAAGGGCTGCGGCCAGTTC
ACGCGGAGCTGCGCGTGCTCCAAGGGGATCGAGGAGTACGTCCGGAGGCA
CCACGGGCGCGCCAACACGCGGAAGGCGCTGTGGTCACGGTAAATTTAGG
CACCAGCTGTACATGTGGCTCTGCCGTGTTTGTTTTGACTGTGGAGTTTT
TTTGTGCCGCGCCCCAACGCTGTTGTAGGTACGGCCGCGGGTACCTCGGT
AACACACCTGGGATGTCTCCGTAGTGGGAAAATATTGGTGTAGTATTCTA
AAATCCTTCACCTCGTTCTGCCCGATTTTTTGGTTCTGCCTAGCGTTTTT
TGATTGGTTGCCTTTGCTTTTCGATCGACTCTCGTGCACCCTTCCCTTCC
CTTCCCTTCCGTTCCTTTCAGATTCGAGAGCTTTGCCTGCCGAAACTCTC
GCTGCATCTACTGCAACCCGCCAGGGCTTCCGATCTACATGGCGGAGTGG
GCGGTGTGTTCGCCGAGGCGAGTCGCGGAGCCCCCCGTGTGTTTGGTGTC
GTGTGGAGTAGTTCACATCCGCCGTTAGGATCGACGGCAGTCCCTTTGGA
TTCAGCTGCTCTCTCTCTCTGCTCCTGATTGACGCGGCCCGCCTCGTGCT
TCGCGGTTTTATGTTCGGGGCGAGAAGTGTTTGTATGAAGCTCAAAACGT
AATTCTACCGGCGGTCAGCACTATTTATACGTCCGCATGGGAAGAGGTCG
TTCCGTGGAGACTTGACTGTTGTCGTCTACCTCTGTGAAGGCATCGCCGA
ACCGACGGGGTGAAAAACGACGAGCTCGCCGACGCAGCGCCTCACACACC
GCACCACTTAAATCTTGTTTCCTCCGTGCGGGCGAGCAGCTTCGTTCCGC
TCAACACACGGCTTCCGTGTACCATGTGCAGCAGCCAGTACTGTAATGCC
AAATTCTTTGGTACGGTAGCTGACAGTAGTTGTGCGTGTACGTGCACCCG
GTAGTCTCCTTAACCAGGTGTGCACGTGTGCTGAATGAAGTGTAGTAGCT
CGTATGCATGCAGTGCCTTCGCCCTTGTTCCTTTTTTTTAGTTTTGTTAC
TCTTTTAACTTTTAATTTTGTTCCTCTTTTTACTTTTGTTCCTCTTCCCC
GGATAAAAACGCAGGTTCAAGCTTAAGAGCGGGCACCCGCCGCCGAATCT
GCACGGGAAGGTTAAGAAGCAGGCTCTTCCTCCTCGATGGGAAAGGGTGA
GTTACATGTCGTCGTCATCTTTGTCGTTGTTGATGATTGTGTGGTGGTGG
TGGGGGGTGGGGGTGATACTGATGTCCGTGTGGGTCCGTGCGGATTCTGC
ACGTTTGAATCTTTTCGTCCGCGCTGTGAGTGTCGCGAATTCCCACGCAT
ATCCATCAATGTTGTGGCAGCTACTTTCTCTCCGCCTCCGCTTCAGGCGG
GCCAGAGCGTCCCCCAGGCGGCGAGGGTTTAGCTTAGAGAACCTGAGACA
AAAAAACGGCCGCTTTTTTTTGTGCTTCGTTTGCCACGCACCCGGGTCTG
CTCCTCGACCCCAACCACACCATCCACTGCTCTCGTACAAGGCCATCTGT
CTCCACCTTGAGCTTGCTCTACCCACCGCGCGCGCCCGCTTTCGACCTCA
ACCACCTCTACCGCACCGGTATTGTCGGAGGCCATCTCCACTGCGGGCCG
TTAAAACCCACGCGCGCACCCAAACCACACATCCATGTCTGTGTGCCTTT
CTGGTGGTGTTGTGACCTATGATGTGTAGGAGGCCATCTCCAGCGGTAGC
GCCACCGGTCGCGGGGCCACGCGGCACGACGAAGGAGCTGCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10281:2601..5293-

>mRNA_S-firma_F_contig10281.417.1 ID=mRNA_S-firma_F_contig10281.417.1|Name=mRNA_S-firma_F_contig10281.417.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_F_contig10281:2601..5293- (Sphaerotrichia firma ET2_F female)
GCGGCGCTCGGGAGGGCGGGGTGGGTGTCTGGGGGGGGGTGGGGCGGAGG
TGGCGGAGTAAGAGGCGGAGCGGGCGGCTACGGCGGCCGTTCGAGCTCGA
GGCGGCGCTCGGGAGGGCGGGGTGGGTGTCTGGGGGGGGGTGGGGCGGAG
GTGGCGGAGTAAGAGGCGGAGCGGGCGGCTACGGCGGCCGTTCGAGCTCG
AGGGCGCGCTGCCACCCCCTGAACCAGACGGCGCACTCGTTCTTCACGGA
CGAGCTGGAGTGCTGCTGGAGGTGCAAGGGCTGCGGCCAGTTCACGCGGA
GCTGCGCGTGCTCCAAGGGGATCGAGGAGTACGTCCGGAGGCACCACGGG
CGCGCCAACACGGCGCGCTGCCACCCCCTGAACCAGACGGCGCACTCGTT
CTTCACGGACGAGCTGGAGTGCTGCTGGAGGTGCAAGGGCTGCGGCCAGT
TCACGCGGAGCTGCGCGTGCTCCAAGGGGATCGAGGAGTACGTCCGGAGG
CACCACGGGCGCGCCAACACATTCGAGAGCTTTGCCTGCCGAAACTCTCG
CTGCATCTACTGCAACCCGCCAGGGCTTCCGATCTACATGGCGGAGTGGG
CGGTGTGTTCGCCGAGATTCGAGAGCTTTGCCTGCCGAAACTCTCGCTGC
ATCTACTGCAACCCGCCAGGGCTTCCGATCTACATGGCGGAGTGGGCGGT
GTGTTCGCCGAGGTTCAAGCTTAAGAGCGGGCACCCGCCGCCGAATCTGC
ACGGGAAGGTTAAGAAGCAGGCTCTTCCTCCTCGATGGGAAAGGGTTCAA
GCTTAAGAGCGGGCACCCGCCGCCGAATCTGCACGGGAAGGTTAAGAAGC
AGGCTCTTCCTCCTCGATGGGAAAGGGAGGCCATCTCCAGCGGTAGCGCC
ACCGGTCGCGGGGCCACGCGGCACGACGAAGGAGCTGCCGAGGCCATCTC
CAGCGGTAGCGCCACCGGTCGCGGGGCCACGCGGCACGACGAAGGAGCTG
CC
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