mRNA_S-firma_F_contig10281.416.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10281.416.1
Unique NamemRNA_S-firma_F_contig10281.416.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10281.416.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.100e-54
Identity = 97/130 (74.62%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:    1 NELSRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVERWCRTKAAQRDADKAEKGRRRKQAF---GGGAGTKRSLESSGEDYEGDYG----FADGGSKRFSRRAVK 369
            N   R RSTEGAV G+HRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSG RNQPCV+RWCRTKAAQR++DK +K  RRK+A    G G GTKR LESSGEDYEGDYG    +AD   KRF RR  K
Sbjct:  902 NGTPRVRSTEGAVEGFHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLESSGEDYEGDYGGGDVYAD---KRFRRRTTK 1028
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BLAST of mRNA_S-firma_F_contig10281.416.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.910e-52
Identity = 97/139 (69.78%), Postives = 105/139 (75.54%), Query Frame = 1 
Query:    1 NELSRARSTEGAVLGYHR---------RLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVERWCRTKAAQRDADKAEKGRRRKQAF---GGGAGTKRSLESSGEDYEGDYG----FADGGSKRFSRRAVK 369
            NE  R RSTEGAV G+HR         RLGANERCNQCTGCLLPNCGKCWGCQHR+EYGGSG RNQPCV+RWCRTKAAQR++DK +K  RRK+A    G G GTKR LE+SGEDYEGDYG    FAD   KRF RR  K
Sbjct:  540 NEPPRVRSTEGAVEGFHRNPRQTAPRRRLGANERCNQCTGCLLPNCGKCWGCQHRIEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLEASGEDYEGDYGGGDVFAD---KRFRRRTPK 675
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10281.416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.100e-5474.62CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI2.910e-5269.78CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10281contigS-firma_F_contig10281:2..2138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G6J0
PFAMsAnk,Hist_deacetyl
Max annot lvl2759|Eukaryota
Evalue4.77e-53
EggNOG OGsCOG0123@1|root,KOG1343@2759|Eukaryota
DescriptionNAD-dependent histone deacetylase activity (H3-K14 specific)
COG categoryK
Hectar predicted targeting categoryother localisation
Exons4
Model size409
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10281.416.1prot_S-firma_F_contig10281.416.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10281 3..2138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.7082043-CDS-S-firma_F_contig10281:2..1141622815558.7082043-CDS-S-firma_F_contig10281:2..114Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 3..114 -
1696949414.910312-CDS-S-firma_F_contig10281:2..1141696949414.910312-CDS-S-firma_F_contig10281:2..114Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 3..114 -
1622815558.720671-CDS-S-firma_F_contig10281:760..9341622815558.720671-CDS-S-firma_F_contig10281:760..934Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 761..934 -
1696949414.9295514-CDS-S-firma_F_contig10281:760..9341696949414.9295514-CDS-S-firma_F_contig10281:760..934Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 761..934 -
1622815558.730327-CDS-S-firma_F_contig10281:1570..16391622815558.730327-CDS-S-firma_F_contig10281:1570..1639Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 1571..1639 -
1696949414.9381154-CDS-S-firma_F_contig10281:1570..16391696949414.9381154-CDS-S-firma_F_contig10281:1570..1639Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 1571..1639 -
1622815558.7399924-CDS-S-firma_F_contig10281:2085..21381622815558.7399924-CDS-S-firma_F_contig10281:2085..2138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 2086..2138 -
1696949414.946452-CDS-S-firma_F_contig10281:2085..21381696949414.946452-CDS-S-firma_F_contig10281:2085..2138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10281 2086..2138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10281.416.1

>prot_S-firma_F_contig10281.416.1 ID=prot_S-firma_F_contig10281.416.1|Name=mRNA_S-firma_F_contig10281.416.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=136bp
NELSRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYG
GSGHRNQPCVERWCRTKAAQRDADKAEKGRRRKQAFGGGAGTKRSLESSG
EDYEGDYGFADGGSKRFSRRAVKAGGAGAGAPGRGS
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mRNA from alignment at S-firma_F_contig10281:2..2138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10281.416.1 ID=mRNA_S-firma_F_contig10281.416.1|Name=mRNA_S-firma_F_contig10281.416.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2137bp|location=Sequence derived from alignment at S-firma_F_contig10281:2..2138- (Sphaerotrichia firma ET2_F female)
AACGAGCTTTCGAGGGCTCGGTCTACCGAAGGGGCCGTGCTGGGCTACCA
CCGGTGAGCGTTGTTGCTGCTGTTGTTGTGAAGAATGGGCGTAAAGCGAG
CTGGTGATGTCGTGTTTTGTGTGATTAACAACGGCAGTTACCGTCCGTAT
GATGTAGCTCTCTCGCCTTTGGCTCTCCAAGCATATTCAGGATGCAAGAT
TTCAAGCAGCAGTTTGACCGTTTGTGTTGTAATGTACCCGTCGATATCTC
TTGCGATGAGAAACCGACGCATTTCGCGTGTCAAAATCTCTTTGATGCGT
TCGTGCTAGTGCTGTATGGGACAAGACATACATACATGCATACATACATA
CATGCGCAGGCCGGGCTCCCCCGGAAAGCTTCGTCGCCCAAGCCCGGAAC
TAAACGATTGCTCTTCCTTTTCCCTCGCTCGCTTCTTCTTTTGTGCCCTT
TTTTCCCGGTTGTCTTACTGTTTCTCCGTCTCGTGTGCGGCGCATGCAGC
CGACTTGGCGCCAACGAGCGGTGCAACCAGTGCACGGGGTGTCTGCTCCC
CAACTGCGGAAAGTGCTGGTAAGCCTTTATTTACTTTGTCCCTCTTTGTC
CTTGGGGGCACTCTTGAGGACTTCGATGTGCTCTCTTTTTCGAAGCGGCA
GCATGGCCTCGACGACTCCAACAACGCTTGCTGCTGTGACAGCCACACCC
ACAACGACAACAACAACAACAACCACGGCAACGCCGACTGCCGTTCCCCC
CGCCGAGGGAGAGAAACCGAACATGGGGCACCCGCGGACTGGGCTCAGTC
CCCTCCCCCCCCCCTCTTTACATGCACCCGTTCCGCCCGCCGAAGCTTCC
CCTACCCCCTAGCAGCAACAACACCCACACACAACGTGCATAAACGTTTG
TGACCACCGCAGCCTCGGGCCGTGATTTTGCTGCAATTTGGCTTGCGATT
ATAGCTTGTGTGCGGGAGAATCGAATCACAATCGTCGACAATCAGCCCCG
GCGATCTCTCCATTCCTCGACAAAAACCGACTCGACTGATGACTCACTCT
CTGCGGCGTATCGTCTCCGTCGAAAACACGGGCCGCCCCCGCACCTTGGC
GTCGCCGTTTTCTCGACAAGCTGACCTGACGGTCTGTCTCCCTGATGCAT
GATATGTACGCACGAAGTATAATTTATGTGTGTCGGTCGCATCGAACATC
GCAGGGGCTGCCAGCACCGCGTGGAGTACGGGGGCTCGGGGCACAGGAAC
CAGCCGTGCGTCGAGCGGTGGTGCCGCACCAAGGCCGCGCAGAGGGACGC
CGATAAGGCCGAGAAGGGCAGGAGGAGGAAGCAGGCCTTCGGCGGCGGCG
CGGGCACCAAGCGCTCTTTGGAGTCGAGGTCAGTTCAGGCGGGGTGTGCA
ATTGAGAGAGACAGAGAGGGAGGAGGGGGGAGGGGGGGGAGGTAAAAGAC
AGAGACCGAGAGACAGACGGAGAGAGAGAGCGGTGGGGCAGGGGTAGACA
GAGAGACAGAGAGACAGAGAAACAGAGGGCGAGTGGGGGCGGACGCACCT
GCTGGGGAGCCCCGACAAGAGGGACCGAAAAACGTAGTGGGCGATGGGAA
AAGAAGGTACATGGAGTTTTTTCGTAGGGCAGGTATGTACAAGATTGGGT
TGGTTTTTGGTCTTTGGAGTGCGACGAGCAGCGAGTTTTTTTATGGAAAA
GAGTATTGCGTGTGTGTGTGTGTTTTGTGACACCGTCTTTGAAGGGGGTG
CAGGCGCTGTTGGCTCTGCCCACGACGCTGCGGGGGGCGTACCGAGGTCC
TACTCAGCGGCCCATGGCTGCGGACGGTAGTAGTACTTGCCCACGAACAC
GCATGATTTAGCGTAACCCCCGCCGCGCGCATCGAACAACAAACACCCAA
ACACCCAAACCAACGCGACACACACACACACACGCATCTCACTCTACCCT
CGCGTGCGTACCGCGCTTGCTTACCGTGCCTCGACCGGTTGGCTTCGATT
CACCGCCGTGACAACGACCATCAGCGGCGAAGACTACGAAGGCGACTATG
GCTTCGCGGACGGCGGCAGCAAGCGCTTCAGCCGCCGGGCCGTTAAGGCG
GGAGGGGCGGGGGCGGGGGCGCCGGGGAGGGGATCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10281:2..2138-

>mRNA_S-firma_F_contig10281.416.1 ID=mRNA_S-firma_F_contig10281.416.1|Name=mRNA_S-firma_F_contig10281.416.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=816bp|location=Sequence derived from alignment at S-firma_F_contig10281:2..2138- (Sphaerotrichia firma ET2_F female)
AACGAGCTTTCGAGGGCTCGGTCTACCGAAGGGGCCGTGCTGGGCTACCA
CCGAACGAGCTTTCGAGGGCTCGGTCTACCGAAGGGGCCGTGCTGGGCTA
CCACCGCCGACTTGGCGCCAACGAGCGGTGCAACCAGTGCACGGGGTGTC
TGCTCCCCAACTGCGGAAAGTGCTGCCGACTTGGCGCCAACGAGCGGTGC
AACCAGTGCACGGGGTGTCTGCTCCCCAACTGCGGAAAGTGCTGGGGCTG
CCAGCACCGCGTGGAGTACGGGGGCTCGGGGCACAGGAACCAGCCGTGCG
TCGAGCGGTGGTGCCGCACCAAGGCCGCGCAGAGGGACGCCGATAAGGCC
GAGAAGGGCAGGAGGAGGAAGCAGGCCTTCGGCGGCGGCGCGGGCACCAA
GCGCTCTTTGGAGTCGAGGGGCTGCCAGCACCGCGTGGAGTACGGGGGCT
CGGGGCACAGGAACCAGCCGTGCGTCGAGCGGTGGTGCCGCACCAAGGCC
GCGCAGAGGGACGCCGATAAGGCCGAGAAGGGCAGGAGGAGGAAGCAGGC
CTTCGGCGGCGGCGCGGGCACCAAGCGCTCTTTGGAGTCGAGCGGCGAAG
ACTACGAAGGCGACTATGGCTTCGCGGACGGCGGCAGCAAGCGCTTCAGC
CGCCGGGCCGTTAAGGCGGGAGGGGCGGGGGCGGGGGCGCCGGGGAGGGG
ATCCCGGCGAAGACTACGAAGGCGACTATGGCTTCGCGGACGGCGGCAGC
AAGCGCTTCAGCCGCCGGGCCGTTAAGGCGGGAGGGGCGGGGGCGGGGGC
GCCGGGGAGGGGATCC
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