mRNA_S-firma_F_contig10275.411.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A6H5KRB1_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB1_9PHAE) HSP 1 Score: 131 bits (330), Expect = 8.480e-33 Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 3
Query: 159 PEGDPAPCG*AS-TIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
P P+ C + +GI+AVA EL+RRARVP+RRA+APLYFAFDH FSVRGQGTILTGTVLTG+ KVNQLVELP+LRLQKKVKSMQMFRKP
Sbjct: 246 PPRPPSSCSEETPAMGIEAVAGELTRRARVPSRRASAPLYFAFDHCFSVRGQGTILTGTVLTGEVKVNQLVELPSLRLQKKVKSMQMFRKP 336
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: F0YCG3_AURAN (Putative selenocysteine-specific elongation factor, selB n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCG3_AURAN) HSP 1 Score: 92.8 bits (229), Expect = 3.330e-19 Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 3
Query: 174 APCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
A G A ++G++ + L RRAR+P+R P +FA DH F +RGQGT++TGT L G VN +VELP + L+KKVKSMQMFRKP
Sbjct: 194 AALGTAPSLGLEGLVETLRRRARMPSRDVEGPFFFAIDHCFPIRGQGTVVTGTALRGACAVNDIVELPEVGLEKKVKSMQMFRKP 278
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A7S4E489_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E489_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 8.350e-19 Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 3
Query: 189 ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
+ +IG+D + A L +RARVP R P +FA DH F +RGQGT++TGT L G +V VELP L L+KKVKSMQMFR+P
Sbjct: 196 SESIGLDELVATLRKRARVPKRDTDGPFFFAIDHCFPIRGQGTVVTGTALRGQCRVGDSVELPALGLEKKVKSMQMFRRP 275
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A7S2G4D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4D0_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.390e-18 Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 3
Query: 198 IGIDAVAAELSRRARVPARRA-AAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
IG+D + + +P RR A P YF+ DH FS++GQGT++TGTVL+G ++N LVE+P LR++KKVKSMQMFR+P
Sbjct: 88 IGLDTLLEVIHNTVAIPERRCDAEPFYFSIDHCFSIKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKKVKSMQMFRRP 165
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: UPI0018D5C7FD (selenocysteine-specific elongation factor-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5C7FD) HSP 1 Score: 89.4 bits (220), Expect = 5.250e-18 Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = 3
Query: 201 GIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
G+DA+ EL R+A +P R A+ P+ +A DH FS+RGQGT++TGT+L+G VN VE+P L++ +KVKSMQMFR+P
Sbjct: 199 GVDALIEELKRQAYLPQRDASGPMLYAVDHCFSIRGQGTVMTGTMLSGKVVVNDTVEIPALKITRKVKSMQMFRQP 274
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: UPI0006B0DD3F (selenocysteine-specific elongation factor-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DD3F) HSP 1 Score: 87.8 bits (216), Expect = 1.800e-17 Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 3
Query: 156 PPEGDPAPCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
P G+ AP +GI + L ++A VP R++A PL F+ DH FS++GQGT++TGTV+ G VN +E+P+L++ KKVKSMQMF+KP
Sbjct: 180 PEAGEIAP------VGIQDLIENLIKQAYVPYRKSAGPLLFSVDHCFSIKGQGTVMTGTVIQGSVSVNDTIEMPSLKMTKKVKSMQMFKKP 264
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A813QA35_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A813QA35_ADIRI) HSP 1 Score: 87.4 bits (215), Expect = 2.430e-17 Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 3
Query: 147 STEPPEGDPAPCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
ST+ P+ PC +ST+ ++ V + L +P R P F+ DH FS+RGQGTI+TGTVL+G K+N +E+ TL+ +KVKSMQMFRKP
Sbjct: 157 STKFPQTPIIPCSASSTLNLNEVISTLQSYIYIPQRSPDGPFVFSVDHCFSIRGQGTIMTGTVLSGSVKINDSIEITTLKEIRKVKSMQMFRKP 250
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: Q55BS5_DICDI (Tr-type G domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55BS5_DICDI) HSP 1 Score: 87.4 bits (215), Expect = 2.450e-17 Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 3
Query: 198 IGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
IGID + EL +P R A L F FDH F ++GQGTILTGTVL G +VNQ++++P L ++KKVKSMQMF KP
Sbjct: 226 IGIDLLTKELLNFINIPKREAKGDLLFEFDHCFQIKGQGTILTGTVLRGSIEVNQIIQIPQLNIEKKVKSMQMFHKP 302
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: UPI001455074F (selenocysteine-specific elongation factor-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455074F) HSP 1 Score: 87.4 bits (215), Expect = 2.460e-17 Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 3
Query: 201 GIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
G+DA+ EL R++ +P+R ++ P+ +A DH FS+RGQGT++TGT+L G VN VE+P L++ +KVKSMQMFR+P
Sbjct: 185 GVDALIEELKRQSYLPSRDSSGPMLYAVDHCFSIRGQGTVMTGTLLRGQIAVNDTVEIPALKITRKVKSMQMFRQP 260
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: V5JUE4_AMBMU (Selenocysteine-specific elongation factor n=1 Tax=Amblyomma maculatum TaxID=34609 RepID=V5JUE4_AMBMU) HSP 1 Score: 87.0 bits (214), Expect = 3.270e-17 Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 3
Query: 165 GDPAPCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
G G A+ +G+D + L + AR+P R+ PL + DH F V+GQGT+LTGT+L G VN +VE+P+L++ KKVKS+QMFRKP
Sbjct: 174 GGAEDAGQAAALGLDGLVEALCQAARLPERQDKGPLVLSVDHCFLVKGQGTVLTGTILQGSVAVNDVVEIPSLKVTKKVKSIQMFRKP 261 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10275.411.1 >prot_S-firma_F_contig10275.411.1 ID=prot_S-firma_F_contig10275.411.1|Name=mRNA_S-firma_F_contig10275.411.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=143bp AGAHPHAPSQSSKGKTKKPPARPSSERSKGSAPGHEKDTASVRVGGGDEAback to top mRNA from alignment at S-firma_F_contig10275:2..558- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10275.411.1 ID=mRNA_S-firma_F_contig10275.411.1|Name=mRNA_S-firma_F_contig10275.411.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=557bp|location=Sequence derived from alignment at S-firma_F_contig10275:2..558- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10275:2..558- >mRNA_S-firma_F_contig10275.411.1 ID=mRNA_S-firma_F_contig10275.411.1|Name=mRNA_S-firma_F_contig10275.411.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=858bp|location=Sequence derived from alignment at S-firma_F_contig10275:2..558- (Sphaerotrichia firma ET2_F female)back to top |