mRNA_S-firma_F_contig10269.401.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10269.401.1
Unique NamemRNA_S-firma_F_contig10269.401.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.970e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ
Sbjct:  408 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 441
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: G3G4N4_9PHAE (T-complex protein 1 epsilon subunit (Fragment) n=22 Tax=Fucaceae TaxID=3010 RepID=G3G4N4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.360e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:   22 CSTPLISSAMRDTATLQLISAEPPPYTMRLSLIR 123
            CSTP ISSA+R+TATLQLISAEPPPYT+RLSLIR
Sbjct:   85 CSTPFISSAIRETATLQLISAEPPPYTIRLSLIR 118
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A7R9ZR80_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZR80_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.360e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            LIKD R+VYGGGSAE+SCS+AVS+ AD + GV+Q
Sbjct:   86 LIKDNRVVYGGGSAEVSCSLAVSKHADSVTGVDQ 119
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A7T8KAJ2_CALRO (Uncharacterized protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8KAJ2_CALRO)

HSP 1 Score: 53.5 bits (127), Expect = 7.710e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            L++D RIVYGGG+AEISCSVAV + AD+IK +EQ
Sbjct:   19 LVRDSRIVYGGGAAEISCSVAVGKEADKIKTIEQ 52
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A7S3PR08_9STRA (T-complex protein 1 subunit epsilon n=3 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR08_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            LI+D RIVYGGGSAEI+CS+AVS  ADE+ G+EQ
Sbjct:  408 LIRDNRIVYGGGSAEIACSIAVSDYADEVGGIEQ 441
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A7S1GCY1_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCY1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            LIKD RIVYGGGSAEI+C++AVS MAD + G+EQ
Sbjct:  408 LIKDNRIVYGGGSAEIACAIAVSEMADTVGGMEQ 441
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A0N4UE63_DRAME (T-complex protein 1 subunit epsilon n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UE63_DRAME)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-8
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            LIKD RIVYGGG+AEISCS+AV+  AD+I+GVEQ
Sbjct:  407 LIKDNRIVYGGGAAEISCSLAVANEADKIEGVEQ 440
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A7R9VLE3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLE3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 8.990e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            LI+D R+VYGGGSAEI+CSVAVS+ AD + GV+Q
Sbjct:   49 LIRDNRVVYGGGSAEIACSVAVSKYADTVAGVDQ 82
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BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A238BLE4_9BILA (T-complex protein 1 subunit epsilon n=3 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A238BLE4_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-7
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            LIKD RIVYGGG+AEISCS+AV+  AD+I+G+EQ
Sbjct:  384 LIKDNRIVYGGGAAEISCSLAVAEEADKIEGIEQ 417
[Close]
BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Match: A0A163JTF7_ABSGL (T-complex protein 1 subunit epsilon n=18 Tax=Mucorales TaxID=4827 RepID=A0A163JTF7_ABSGL)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-7
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = -2 
Query:   21 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 122
            L++D R+VYGGG+AEISCS+AVS++ADEI  +EQ
Sbjct:  417 LVRDNRVVYGGGAAEISCSLAVSKVADEISSIEQ 450
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10269.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI32_ECTSI1.970e-12100.00T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
G3G4N4_9PHAE4.360e-1188.24T-complex protein 1 epsilon subunit (Fragment) n=2... [more]
A0A7R9ZR80_9STRA7.360e-870.59Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7T8KAJ2_CALRO7.710e-870.59Uncharacterized protein n=1 Tax=Caligus rogercress... [more]
A0A7S3PR08_9STRA8.120e-873.53T-complex protein 1 subunit epsilon n=3 Tax=Aplano... [more]
A0A7S1GCY1_9STRA8.120e-873.53T-complex protein 1 subunit epsilon n=1 Tax=Bicoso... [more]
A0A0N4UE63_DRAME8.120e-876.47T-complex protein 1 subunit epsilon n=1 Tax=Dracun... [more]
A0A7R9VLE3_9STRA8.990e-870.59Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A238BLE4_9BILA1.110e-773.53T-complex protein 1 subunit epsilon n=3 Tax=Onchoc... [more]
A0A163JTF7_ABSGL1.110e-767.65T-complex protein 1 subunit epsilon n=18 Tax=Mucor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10269contigS-firma_F_contig10269:5000..5122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.8747113-CDS-S-firma_F_contig10269:4999..51221622815556.8747113-CDS-S-firma_F_contig10269:4999..5122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 5000..5122 +
1696949413.5409126-CDS-S-firma_F_contig10269:4999..51221696949413.5409126-CDS-S-firma_F_contig10269:4999..5122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 5000..5122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10269.401.1prot_S-firma_F_contig10269.401.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10269 5000..5122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10269.401.1

>prot_S-firma_F_contig10269.401.1 ID=prot_S-firma_F_contig10269.401.1|Name=mRNA_S-firma_F_contig10269.401.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=41bp
HRKITRTCSTPLISSAMRDTATLQLISAEPPPYTMRLSLIR
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mRNA from alignment at S-firma_F_contig10269:5000..5122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10269.401.1 ID=mRNA_S-firma_F_contig10269.401.1|Name=mRNA_S-firma_F_contig10269.401.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=123bp|location=Sequence derived from alignment at S-firma_F_contig10269:5000..5122+ (Sphaerotrichia firma ET2_F female)
CACCGCAAAATAACACGCACCTGCTCCACCCCCTTGATCTCGTCCGCCAT
GCGGGACACAGCCACGCTGCAGCTAATCTCCGCGGAACCCCCACCGTACA
CGATGCGCTTGTCCTTGATCAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10269:5000..5122+

>mRNA_S-firma_F_contig10269.401.1 ID=mRNA_S-firma_F_contig10269.401.1|Name=mRNA_S-firma_F_contig10269.401.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=246bp|location=Sequence derived from alignment at S-firma_F_contig10269:5000..5122+ (Sphaerotrichia firma ET2_F female)
CACCGCAAAATAACACGCACCTGCTCCACCCCCTTGATCTCGTCCGCCAT
GCGGGACACAGCCACGCTGCAGCTAATCTCCGCGGAACCCCCACCGTACA
CGATGCGCTTGTCCTTGATCAGGCACCGCAAAATAACACGCACCTGCTCC
ACCCCCTTGATCTCGTCCGCCATGCGGGACACAGCCACGCTGCAGCTAAT
CTCCGCGGAACCCCCACCGTACACGATGCGCTTGTCCTTGATCAGG
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