mRNA_S-firma_F_contig10269.400.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI) HSP 1 Score: 129 bits (325), Expect = 1.590e-33 Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
AVRSFADALDDVPMALAEN+GLSPITELSAVKSRQIAEGI++LGIDCNQV MK QGIFETLIGKQQQLLLATQVVKMIL
Sbjct: 443 AVRSFADALDDVPMALAENSGLSPITELSAVKSRQIAEGITSLGIDCNQVGTC--DMKEQGIFETLIGKQQQLLLATQVVKMIL 524
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: G3G4N4_9PHAE (T-complex protein 1 epsilon subunit (Fragment) n=22 Tax=Fucaceae TaxID=3010 RepID=G3G4N4_9PHAE) HSP 1 Score: 110 bits (276), Expect = 9.470e-30 Identity = 62/83 (74.70%), Postives = 65/83 (78.31%), Query Frame = 2
Query: 2 RIILTTCVAKRSCCCFPMRVSKIP*TFIERRACFTWLQSIPSVLMPSAICLDLTADSSVMGDSPAFSARAMGTSSKASAKLRT 250
RII TT VA RSCCC PM VSK+P FI TWLQS+P VL PSAICLD TADSSVMG+ PAFSARAMG SSKASAKLRT
Sbjct: 2 RIIFTTWVANRSCCCLPMSVSKMPCFFISHVP--TWLQSMPRVLTPSAICLDFTADSSVMGERPAFSARAMGMSSKASAKLRT 82
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S2BNY0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNY0_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.660e-28 Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
A+R+FADAL+D+PMALAEN+GLSPIT+LSAVKSRQ+ EG LGIDC + MK Q +FETLIGKQQQLLLATQVVKMIL
Sbjct: 63 ALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA--GTNDMKDQLVFETLIGKQQQLLLATQVVKMIL 144
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A835ZI55_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA) HSP 1 Score: 114 bits (286), Expect = 5.040e-28 Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
AVR+FADALDDVPMALAEN+GLSPI+ELSAVK+ Q+ +G S LGIDCNQ + MK Q IFETLIGKQQQLLLATQVVKMIL
Sbjct: 450 AVRAFADALDDVPMALAENSGLSPISELSAVKAAQVKDGNSHLGIDCNQ--EGTADMKTQRIFETLIGKQQQLLLATQVVKMIL 531
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A3R7AVZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AVZ3_9STRA) HSP 1 Score: 104 bits (259), Expect = 7.050e-27 Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
A+RSFA+AL+D+PMALAENAGLSPI LSAV+++QIA+ LGIDCNQ MK Q +FETLIGKQQQ+ LATQVV+MIL
Sbjct: 45 AIRSFAEALEDIPMALAENAGLSPIDSLSAVRAQQIADNNPRLGIDCNQTGTFGTYMKEQHVFETLIGKQQQIQLATQVVRMIL 128
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A2G2X4S9_CAPBA (T-complex protein 1 subunit epsilon n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X4S9_CAPBA) HSP 1 Score: 102 bits (253), Expect = 5.280e-26 Identity = 58/84 (69.05%), Postives = 65/84 (77.38%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
A+R+FADALD VPMALAEN+GL PI LSAVK++QI E GIDCN V M+ Q +FETLIGKQQQLLLATQVVKMIL
Sbjct: 45 AIRAFADALDSVPMALAENSGLQPIETLSAVKAQQIKENNPCCGIDCNDV--GTNDMREQNVFETLIGKQQQLLLATQVVKMIL 126
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A6A6LQ33_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LQ33_HEVBR) HSP 1 Score: 100 bits (250), Expect = 5.320e-26 Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
A+R+FADALD +PMALAEN+GL PI LSAVKS+QI E GIDCN + M Q +FETLIGKQQQ+LLATQVVKMIL
Sbjct: 8 AIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKENNPRCGIDCNDI--GTNDMSEQNVFETLIGKQQQILLATQVVKMIL 89
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S2BNZ2_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNZ2_9STRA) HSP 1 Score: 108 bits (271), Expect = 5.930e-26 Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
A+R+FADAL+D+PMALAEN+GLSPIT+LSAVKSRQ+ EG LGIDC + MK Q +FETLIGKQQQLLLATQVVKMIL
Sbjct: 443 ALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA--GTNDMKDQLVFETLIGKQQQLLLATQVVKMIL 524
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S3HCP3_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCP3_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.540e-25 Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = -1
Query: 1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
A+R+FADALDD+PMALAENAGLSPITE++++K+RQ+AEG LG+DCNQ+ MK +FETLIGK QQL LATQVVKMIL
Sbjct: 443 AIRAFADALDDLPMALAENAGLSPITEVTSIKARQLAEGNPRLGVDCNQI--GSNDMKDHLVFETLIGKMQQLQLATQVVKMIL 524
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S0LFB7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LFB7_9EUKA) HSP 1 Score: 99.4 bits (246), Expect = 2.220e-25 Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = -1
Query: 19 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQ 252
A+R+FADALDD+PMALAENAGLSPITE++++K+RQ+AE LG+DCNQ+ MK +FETLIGKQQQL LATQ
Sbjct: 26 AIRAFADALDDLPMALAENAGLSPITEVTSIKARQLAENNPRLGVDCNQI--GSNDMKDHLVFETLIGKQQQLQLATQ 101 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10269.400.1 >prot_S-firma_F_contig10269.400.1 ID=prot_S-firma_F_contig10269.400.1|Name=mRNA_S-firma_F_contig10269.400.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=84bp EDHLDDLRCQEELLLLPDESLEDSLNLHRTAGLLHLVAVDPQRADALGDLback to top mRNA from alignment at S-firma_F_contig10269:3508..4184+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10269.400.1 ID=mRNA_S-firma_F_contig10269.400.1|Name=mRNA_S-firma_F_contig10269.400.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=677bp|location=Sequence derived from alignment at S-firma_F_contig10269:3508..4184+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10269:3508..4184+ >mRNA_S-firma_F_contig10269.400.1 ID=mRNA_S-firma_F_contig10269.400.1|Name=mRNA_S-firma_F_contig10269.400.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=504bp|location=Sequence derived from alignment at S-firma_F_contig10269:3508..4184+ (Sphaerotrichia firma ET2_F female)back to top |