mRNA_S-firma_F_contig10269.400.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10269.400.1
Unique NamemRNA_S-firma_F_contig10269.400.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.590e-33
Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            AVRSFADALDDVPMALAEN+GLSPITELSAVKSRQIAEGI++LGIDCNQV      MK QGIFETLIGKQQQLLLATQVVKMIL
Sbjct:  443 AVRSFADALDDVPMALAENSGLSPITELSAVKSRQIAEGITSLGIDCNQVGTC--DMKEQGIFETLIGKQQQLLLATQVVKMIL 524          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: G3G4N4_9PHAE (T-complex protein 1 epsilon subunit (Fragment) n=22 Tax=Fucaceae TaxID=3010 RepID=G3G4N4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 9.470e-30
Identity = 62/83 (74.70%), Postives = 65/83 (78.31%), Query Frame = 2
Query:    2 RIILTTCVAKRSCCCFPMRVSKIP*TFIERRACFTWLQSIPSVLMPSAICLDLTADSSVMGDSPAFSARAMGTSSKASAKLRT 250
            RII TT VA RSCCC PM VSK+P  FI      TWLQS+P VL PSAICLD TADSSVMG+ PAFSARAMG SSKASAKLRT
Sbjct:    2 RIIFTTWVANRSCCCLPMSVSKMPCFFISHVP--TWLQSMPRVLTPSAICLDFTADSSVMGERPAFSARAMGMSSKASAKLRT 82          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S2BNY0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNY0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.660e-28
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            A+R+FADAL+D+PMALAEN+GLSPIT+LSAVKSRQ+ EG   LGIDC +       MK Q +FETLIGKQQQLLLATQVVKMIL
Sbjct:   63 ALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA--GTNDMKDQLVFETLIGKQQQLLLATQVVKMIL 144          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A835ZI55_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.040e-28
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            AVR+FADALDDVPMALAEN+GLSPI+ELSAVK+ Q+ +G S LGIDCNQ  +    MK Q IFETLIGKQQQLLLATQVVKMIL
Sbjct:  450 AVRAFADALDDVPMALAENSGLSPISELSAVKAAQVKDGNSHLGIDCNQ--EGTADMKTQRIFETLIGKQQQLLLATQVVKMIL 531          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A3R7AVZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AVZ3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.050e-27
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            A+RSFA+AL+D+PMALAENAGLSPI  LSAV+++QIA+    LGIDCNQ       MK Q +FETLIGKQQQ+ LATQVV+MIL
Sbjct:   45 AIRSFAEALEDIPMALAENAGLSPIDSLSAVRAQQIADNNPRLGIDCNQTGTFGTYMKEQHVFETLIGKQQQIQLATQVVRMIL 128          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A2G2X4S9_CAPBA (T-complex protein 1 subunit epsilon n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X4S9_CAPBA)

HSP 1 Score: 102 bits (253), Expect = 5.280e-26
Identity = 58/84 (69.05%), Postives = 65/84 (77.38%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            A+R+FADALD VPMALAEN+GL PI  LSAVK++QI E     GIDCN V      M+ Q +FETLIGKQQQLLLATQVVKMIL
Sbjct:   45 AIRAFADALDSVPMALAENSGLQPIETLSAVKAQQIKENNPCCGIDCNDV--GTNDMREQNVFETLIGKQQQLLLATQVVKMIL 126          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A6A6LQ33_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LQ33_HEVBR)

HSP 1 Score: 100 bits (250), Expect = 5.320e-26
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            A+R+FADALD +PMALAEN+GL PI  LSAVKS+QI E     GIDCN +      M  Q +FETLIGKQQQ+LLATQVVKMIL
Sbjct:    8 AIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKENNPRCGIDCNDI--GTNDMSEQNVFETLIGKQQQILLATQVVKMIL 89          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S2BNZ2_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNZ2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.930e-26
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            A+R+FADAL+D+PMALAEN+GLSPIT+LSAVKSRQ+ EG   LGIDC +       MK Q +FETLIGKQQQLLLATQVVKMIL
Sbjct:  443 ALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA--GTNDMKDQLVFETLIGKQQQLLLATQVVKMIL 524          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S3HCP3_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCP3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.540e-25
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = -1
Query:    1 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQVVKMIL 252
            A+R+FADALDD+PMALAENAGLSPITE++++K+RQ+AEG   LG+DCNQ+      MK   +FETLIGK QQL LATQVVKMIL
Sbjct:  443 AIRAFADALDDLPMALAENAGLSPITEVTSIKARQLAEGNPRLGVDCNQI--GSNDMKDHLVFETLIGKMQQLQLATQVVKMIL 524          
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Match: A0A7S0LFB7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LFB7_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 2.220e-25
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = -1
Query:   19 AVRSFADALDDVPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVKQARRSMKVQGIFETLIGKQQQLLLATQ 252
            A+R+FADALDD+PMALAENAGLSPITE++++K+RQ+AE    LG+DCNQ+      MK   +FETLIGKQQQL LATQ
Sbjct:   26 AIRAFADALDDLPMALAENAGLSPITEVTSIKARQLAENNPRLGVDCNQI--GSNDMKDHLVFETLIGKQQQLQLATQ 101          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10269.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI32_ECTSI1.590e-3388.10T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
G3G4N4_9PHAE9.470e-3074.70T-complex protein 1 epsilon subunit (Fragment) n=2... [more]
A0A7S2BNY0_9STRA1.660e-2872.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZI55_9STRA5.040e-2877.38T-complex protein 1 subunit epsilon n=1 Tax=Tribon... [more]
A0A3R7AVZ3_9STRA7.050e-2767.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2G2X4S9_CAPBA5.280e-2669.05T-complex protein 1 subunit epsilon n=1 Tax=Capsic... [more]
A0A6A6LQ33_HEVBR5.320e-2666.67Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
A0A7S2BNZ2_9STRA5.930e-2672.62T-complex protein 1 subunit epsilon n=1 Tax=Floren... [more]
A0A7S3HCP3_9STRA1.540e-2569.05T-complex protein 1 subunit epsilon n=1 Tax=Spumel... [more]
A0A7S0LFB7_9EUKA2.220e-2566.67Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10269contigS-firma_F_contig10269:3508..4184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.7661138-CDS-S-firma_F_contig10269:3507..35911622815556.7661138-CDS-S-firma_F_contig10269:3507..3591Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 3508..3591 +
1696949413.50462-CDS-S-firma_F_contig10269:3507..35911696949413.50462-CDS-S-firma_F_contig10269:3507..3591Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 3508..3591 +
1622815556.7789364-CDS-S-firma_F_contig10269:4016..41841622815556.7789364-CDS-S-firma_F_contig10269:4016..4184Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 4017..4184 +
1696949413.5181391-CDS-S-firma_F_contig10269:4016..41841696949413.5181391-CDS-S-firma_F_contig10269:4016..4184Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 4017..4184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10269.400.1prot_S-firma_F_contig10269.400.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10269 3508..4184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10269.400.1

>prot_S-firma_F_contig10269.400.1 ID=prot_S-firma_F_contig10269.400.1|Name=mRNA_S-firma_F_contig10269.400.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=84bp
EDHLDDLRCQEELLLLPDESLEDSLNLHRTAGLLHLVAVDPQRADALGDL
PGLDGRQFGDGRQPGVFGQGHGDVVQSVCEAPDG
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mRNA from alignment at S-firma_F_contig10269:3508..4184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10269.400.1 ID=mRNA_S-firma_F_contig10269.400.1|Name=mRNA_S-firma_F_contig10269.400.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=677bp|location=Sequence derived from alignment at S-firma_F_contig10269:3508..4184+ (Sphaerotrichia firma ET2_F female)
GAGGATCATCTTGACGACCTGCGTTGCCAAGAGGAGCTGCTGCTGCTTCC CGATGAGAGTCTCGAAGATTCCCTGAACCTTCATGTCGCACGTGCCCGCC TGACTCGCAGAGCACAAAACAAAACAAAAAACGCACCACAAAAAGCAGGA GTCAAGTCAACGAACTGTAGAGAAGCGCCGTCAGTGGTGAAAAGACGCGC CAAATTTGAGCACAGGTACGAGGGAACTGGAATGGCGGAGATACTGGGTG CATTCGACGCGGTATTCGTACGGACACAACAAACACGACGAAGTCGTCGG CGTGCTAAACTTATCGTCACACAAAGGCGAGACCCCTCGAAGCACCCACG TCCCTCTGCAACCCCCCCAAGCTTGGAGACTCCCTAAGAACGCGACGCGA GGTACTACGAAATAAACGTCAACTAGGGCGCTCCAAGACGAAACTTTGAC ATCGGTGTAGCACCGAAAGTCCCAGAAAAAACAACAACGCCAAACAACAA GAAGTAAAGCGAACGGCGGGCCTGCTTCACCTGGTTGCAGTCGATCCCCA GCGTGCTGATGCCCTCGGCGATCTGCCTGGACTTGACGGCCGACAGTTCG GTGATGGGCGACAGCCCGGCGTTTTCGGCCAGGGCCATGGGGACGTCGTC CAAAGCGTCTGCGAAGCTCCGGACGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10269:3508..4184+

>mRNA_S-firma_F_contig10269.400.1 ID=mRNA_S-firma_F_contig10269.400.1|Name=mRNA_S-firma_F_contig10269.400.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=504bp|location=Sequence derived from alignment at S-firma_F_contig10269:3508..4184+ (Sphaerotrichia firma ET2_F female)
GAGGATCATCTTGACGACCTGCGTTGCCAAGAGGAGCTGCTGCTGCTTCC
CGATGAGAGTCTCGAAGATTCCCTGAACCTTCATGAGGATCATCTTGACG
ACCTGCGTTGCCAAGAGGAGCTGCTGCTGCTTCCCGATGAGAGTCTCGAA
GATTCCCTGAACCTTCATCGAACGGCGGGCCTGCTTCACCTGGTTGCAGT
CGATCCCCAGCGTGCTGATGCCCTCGGCGATCTGCCTGGACTTGACGGCC
GACAGTTCGGTGATGGGCGACAGCCCGGCGTTTTCGGCCAGGGCCATGGG
GACGTCGTCCAAAGCGTCTGCGAAGCTCCGGACGGCCGAACGGCGGGCCT
GCTTCACCTGGTTGCAGTCGATCCCCAGCGTGCTGATGCCCTCGGCGATC
TGCCTGGACTTGACGGCCGACAGTTCGGTGATGGGCGACAGCCCGGCGTT
TTCGGCCAGGGCCATGGGGACGTCGTCCAAAGCGTCTGCGAAGCTCCGGA
CGGC
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