mRNA_S-firma_F_contig10264.398.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10264.398.1
Unique NamemRNA_S-firma_F_contig10264.398.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10264.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10264contigS-firma_F_contig10264:871..2688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1396
Cds size1395
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10264.398.1prot_S-firma_F_contig10264.398.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10264 871..2688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.6879587-CDS-S-firma_F_contig10264:870..10471622815556.6879587-CDS-S-firma_F_contig10264:870..1047Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 871..1047 -
1696949413.4684463-CDS-S-firma_F_contig10264:870..10471696949413.4684463-CDS-S-firma_F_contig10264:870..1047Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 871..1047 -
1622815556.7017078-CDS-S-firma_F_contig10264:1166..13101622815556.7017078-CDS-S-firma_F_contig10264:1166..1310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 1167..1310 -
1696949413.4780967-CDS-S-firma_F_contig10264:1166..13101696949413.4780967-CDS-S-firma_F_contig10264:1166..1310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 1167..1310 -
1622815556.7133641-CDS-S-firma_F_contig10264:1446..15301622815556.7133641-CDS-S-firma_F_contig10264:1446..1530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 1447..1530 -
1696949413.4861314-CDS-S-firma_F_contig10264:1446..15301696949413.4861314-CDS-S-firma_F_contig10264:1446..1530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 1447..1530 -
1622815556.725926-CDS-S-firma_F_contig10264:1698..26881622815556.725926-CDS-S-firma_F_contig10264:1698..2688Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 1699..2688 -
1696949413.4942746-CDS-S-firma_F_contig10264:1698..26881696949413.4942746-CDS-S-firma_F_contig10264:1698..2688Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10264 1699..2688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10264.398.1

>prot_S-firma_F_contig10264.398.1 ID=prot_S-firma_F_contig10264.398.1|Name=mRNA_S-firma_F_contig10264.398.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=465bp
CVSTLPLCYDSIYLCDTFAAVPRVIFIPGTVHAYNVCVFQHLCAPPTCMC
ILRVCLCILRLCVCVHPVTCASKHSYSVSTLAEISSLCAYPPLCQQPLIF
QYSKRAVQGLKKIVADRIVEHVTVGVATTTEELRHESRRGVATLQVERAR
FLGFDINEFSSGGREDRLANRRQTMLSEFENPLYTQYLNWGVYSSLLIMG
AAAEAINHIIVVWVAHPTDPSALTVHRAHVNHSGTLAIHAPKHPDGIIHL
RFYKSGDETNPDVATWAGGYGGHFELLRQPVLGWGGDLGPFTPLRGPDKT
KRGAKGPPVSPPLPGDGRGEPPRMKDSRTNGSNTDSERESAAKEAAEKAK
RVRATRAQAAKEKRQQRKIAAANAAAAKREKAAVTAADMEKALDEAGKAK
RAKLAEAGRIRRAKAKAKAEAKAEAEAKAEAEAEAASAGAKAKAGAAAMG
GLDRDKRKMLQVRL*
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mRNA from alignment at S-firma_F_contig10264:871..2688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10264.398.1 ID=mRNA_S-firma_F_contig10264.398.1|Name=mRNA_S-firma_F_contig10264.398.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1818bp|location=Sequence derived from alignment at S-firma_F_contig10264:871..2688- (Sphaerotrichia firma ET2_F female)
TGTGTGTCTACCCTGCCACTTTGCTATGACTCAATATACCTCTGTGACAC
TTTTGCTGCGGTACCTCGTGTGATCTTCATTCCCGGAACTGTTCACGCTT
ACAACGTGTGTGTTTTCCAACACCTGTGTGCTCCTCCGACGTGTATGTGC
ATTCTACGTGTGTGCCTGTGCATTCTACGTTTGTGCGTGTGTGTCCACCC
TGTAACATGTGCTTCAAAACACTCGTACTCTGTCTCAACACTCGCTGAAA
TCTCTTCCCTGTGCGCCTATCCACCTTTGTGTCAGCAGCCTCTCATCTTC
CAATATTCCAAGCGCGCCGTTCAAGGGCTTAAGAAGATCGTCGCTGATCG
CATCGTCGAACACGTCACCGTGGGTGTTGCTACCACGACTGAGGAGCTAC
GACACGAAAGCAGGAGAGGCGTTGCCACCTTGCAGGTGGAGCGAGCTCGT
TTCTTGGGCTTCGACATCAACGAGTTCTCGTCGGGGGGGCGCGAGGACAG
GCTCGCCAATAGGCGGCAAACGATGCTGTCGGAGTTCGAGAACCCCCTTT
ACACCCAGTACTTGAATTGGGGGGTTTACTCGTCTCTCCTCATCATGGGT
GCCGCTGCCGAGGCCATCAACCACATCATCGTCGTTTGGGTTGCTCACCC
GACAGATCCCTCCGCACTCACTGTGCACCGCGCCCACGTCAACCACTCTG
GGACCTTAGCCATTCACGCTCCCAAGCACCCGGACGGTATCATCCATCTG
CGATTCTACAAGTCAGGTGATGAGACAAACCCGGACGTCGCGACCTGGGC
TGGGGGTTATGGCGGCCACTTCGAACTGCTCCGTCAGCCTGTCCTGGGCT
GGGGGGGGGACCTAGGCCCTTTTACTCCGCTTCGAGGGCCCGACAAGACT
AAGCGAGGTGCCAAGGGACCTCCCGTCTCCCCTCCGCTTCCCGGTGACGG
ACGCGGGGAACCTCCTCGGATGAAAGACAGTCGCACGAATGTGAGTATGT
TTGCCCCGGGTTCTACGCCGATTAATCGAACGGACAGCAGGCGCCCCGGG
TTCCACAGGTCCTTTCTGGTCGGCTTCAGACGCACGTTCCGTCCTTGTCT
GATCCACCCTTTCCCTTTCCCTTTCCCATCATCATGCTCCGCCCGCAACT
TCTCCAAGGGGAGCAACACGGATTCGGAAAGGGAATCGGCCGCTAAGGAA
GCCGCGGAAAAGGCCAAACGCGTGAGGGCCACGCGTGCTCAGGTGGGCGG
GCGGTGGAATCCGTACGGGTTTCCGTATCGAACTACCAACGACCATCTGC
TCACCACCCTGTTGCTTATGCCTCGCTCGCTCTTTCCGCGCACTCACGTC
TTCTACCTTTCTTCTTCGCCCGAATCAGGCGGCCAAGGAAAAACGTCAAC
AGAGAAAGATCGCCGCCGCCAACGCCGCCGCTGCCAAGCGCGAAAAGGCG
GCCGTTACTGCCGCTGATATGGAGAAGGCACTGGACGAGGCCGGGAAGGC
GAAAAGGGCTAAGCTTGCAGAGGTACGGTTTAGCCTTGCAGGGCTCCAAC
GGACTTACTTCTCGTACCTTCAGTCCCTCGTCGTTCACAATTCGCATGGG
TCTTACTTGTCCGCATTAACGTGCCTCTTTCCTCCATCCAGGCGGGAAGG
ATACGGCGGGCGAAGGCCAAGGCCAAGGCCGAGGCCAAGGCCGAGGCCGA
GGCCAAGGCGGAGGCCGAGGCGGAGGCCGCGAGTGCGGGAGCCAAGGCGA
AGGCGGGCGCGGCTGCCATGGGAGGGTTAGACAGGGACAAACGAAAGATG
CTCCAGGTAAGGCTATAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10264:871..2688-

>mRNA_S-firma_F_contig10264.398.1 ID=mRNA_S-firma_F_contig10264.398.1|Name=mRNA_S-firma_F_contig10264.398.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2790bp|location=Sequence derived from alignment at S-firma_F_contig10264:871..2688- (Sphaerotrichia firma ET2_F female)
TGTGTGTCTACCCTGCCACTTTGCTATGACTCAATATACCTCTGTGACAC
TTTTGCTGCGGTACCTCGTGTGATCTTCATTCCCGGAACTGTTCACGCTT
ACAACGTGTGTGTTTTCCAACACCTGTGTGCTCCTCCGACGTGTATGTGC
ATTCTACGTGTGTGCCTGTGCATTCTACGTTTGTGCGTGTGTGTCCACCC
TGTAACATGTGCTTCAAAACACTCGTACTCTGTCTCAACACTCGCTGAAA
TCTCTTCCCTGTGCGCCTATCCACCTTTGTGTCAGCAGCCTCTCATCTTC
CAATATTCCAAGCGCGCCGTTCAAGGGCTTAAGAAGATCGTCGCTGATCG
CATCGTCGAACACGTCACCGTGGGTGTTGCTACCACGACTGAGGAGCTAC
GACACGAAAGCAGGAGAGGCGTTGCCACCTTGCAGGTGGAGCGAGCTCGT
TTCTTGGGCTTCGACATCAACGAGTTCTCGTCGGGGGGGCGCGAGGACAG
GCTCGCCAATAGGCGGCAAACGATGCTGTCGGAGTTCGAGAACCCCCTTT
ACACCCAGTACTTGAATTGGGGGGTTTACTCGTCTCTCCTCATCATGGGT
GCCGCTGCCGAGGCCATCAACCACATCATCGTCGTTTGGGTTGCTCACCC
GACAGATCCCTCCGCACTCACTGTGCACCGCGCCCACGTCAACCACTCTG
GGACCTTAGCCATTCACGCTCCCAAGCACCCGGACGGTATCATCCATCTG
CGATTCTACAAGTCAGGTGATGAGACAAACCCGGACGTCGCGACCTGGGC
TGGGGGTTATGGCGGCCACTTCGAACTGCTCCGTCAGCCTGTCCTGGGCT
GGGGGGGGGACCTAGGCCCTTTTACTCCGCTTCGAGGGCCCGACAAGACT
AAGCGAGGTGCCAAGGGACCTCCCGTCTCCCCTCCGCTTCCCGGTGACGG
ACGCGGGGAACCTCCTCGGATGAAAGACAGTCGCACGAATTGTGTGTCTA
CCCTGCCACTTTGCTATGACTCAATATACCTCTGTGACACTTTTGCTGCG
GTACCTCGTGTGATCTTCATTCCCGGAACTGTTCACGCTTACAACGTGTG
TGTTTTCCAACACCTGTGTGCTCCTCCGACGTGTATGTGCATTCTACGTG
TGTGCCTGTGCATTCTACGTTTGTGCGTGTGTGTCCACCCTGTAACATGT
GCTTCAAAACACTCGTACTCTGTCTCAACACTCGCTGAAATCTCTTCCCT
GTGCGCCTATCCACCTTTGTGTCAGCAGCCTCTCATCTTCCAATATTCCA
AGCGCGCCGTTCAAGGGCTTAAGAAGATCGTCGCTGATCGCATCGTCGAA
CACGTCACCGTGGGTGTTGCTACCACGACTGAGGAGCTACGACACGAAAG
CAGGAGAGGCGTTGCCACCTTGCAGGTGGAGCGAGCTCGTTTCTTGGGCT
TCGACATCAACGAGTTCTCGTCGGGGGGGCGCGAGGACAGGCTCGCCAAT
AGGCGGCAAACGATGCTGTCGGAGTTCGAGAACCCCCTTTACACCCAGTA
CTTGAATTGGGGGGTTTACTCGTCTCTCCTCATCATGGGTGCCGCTGCCG
AGGCCATCAACCACATCATCGTCGTTTGGGTTGCTCACCCGACAGATCCC
TCCGCACTCACTGTGCACCGCGCCCACGTCAACCACTCTGGGACCTTAGC
CATTCACGCTCCCAAGCACCCGGACGGTATCATCCATCTGCGATTCTACA
AGTCAGGTGATGAGACAAACCCGGACGTCGCGACCTGGGCTGGGGGTTAT
GGCGGCCACTTCGAACTGCTCCGTCAGCCTGTCCTGGGCTGGGGGGGGGA
CCTAGGCCCTTTTACTCCGCTTCGAGGGCCCGACAAGACTAAGCGAGGTG
CCAAGGGACCTCCCGTCTCCCCTCCGCTTCCCGGTGACGGACGCGGGGAA
CCTCCTCGGATGAAAGACAGTCGCACGAATGGGAGCAACACGGATTCGGA
AAGGGAATCGGCCGCTAAGGAAGCCGCGGAAAAGGCCAAACGCGTGAGGG
CCACGCGTGCTCAGGGGAGCAACACGGATTCGGAAAGGGAATCGGCCGCT
AAGGAAGCCGCGGAAAAGGCCAAACGCGTGAGGGCCACGCGTGCTCAGGC
GGCCAAGGAAAAACGTCAACAGAGAAAGATCGCCGCCGCCAACGCCGCCG
CTGCCAAGCGCGAAAAGGCGGCCGTTACTGCCGCTGATATGGAGAAGGCA
CTGGACGAGGCCGGGAAGGCGAAAAGGGCTAAGCTTGCAGAGGCGGCCAA
GGAAAAACGTCAACAGAGAAAGATCGCCGCCGCCAACGCCGCCGCTGCCA
AGCGCGAAAAGGCGGCCGTTACTGCCGCTGATATGGAGAAGGCACTGGAC
GAGGCCGGGAAGGCGAAAAGGGCTAAGCTTGCAGAGGCGGGAAGGATACG
GCGGGCGAAGGCCAAGGCCAAGGCCGAGGCCAAGGCCGAGGCCGAGGCCA
AGGCGGAGGCCGAGGCGGAGGCCGCGAGTGCGGGAGCCAAGGCGAAGGCG
GGCGCGGCTGCCATGGGAGGGTTAGACAGGGACAAACGAAAGATGCTCCA
GGTAAGGCTATAGGCGGGAAGGATACGGCGGGCGAAGGCCAAGGCCAAGG
CCGAGGCCAAGGCCGAGGCCGAGGCCAAGGCGGAGGCCGAGGCGGAGGCC
GCGAGTGCGGGAGCCAAGGCGAAGGCGGGCGCGGCTGCCATGGGAGGGTT
AGACAGGGACAAACGAAAGATGCTCCAGGTAAGGCTATAG
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