mRNA_S-firma_F_contig10263.397.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10263.397.1
Unique NamemRNA_S-firma_F_contig10263.397.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10263.397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10263contigS-firma_F_contig10263:4051..4429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.624054-CDS-S-firma_F_contig10263:4050..43831622815556.624054-CDS-S-firma_F_contig10263:4050..4383Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10263 4051..4383 +
1696949413.4430842-CDS-S-firma_F_contig10263:4050..43831696949413.4430842-CDS-S-firma_F_contig10263:4050..4383Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10263 4051..4383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.6402023-UTR-S-firma_F_contig10263:4383..44291622815556.6402023-UTR-S-firma_F_contig10263:4383..4429Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10263 4384..4429 +
1696949413.4516973-UTR-S-firma_F_contig10263:4383..44291696949413.4516973-UTR-S-firma_F_contig10263:4383..4429Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10263 4384..4429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10263.397.1prot_S-firma_F_contig10263.397.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10263 4051..4383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10263.397.1

>prot_S-firma_F_contig10263.397.1 ID=prot_S-firma_F_contig10263.397.1|Name=mRNA_S-firma_F_contig10263.397.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=111bp
LLSPHDHVRVCAPPLQSLGRRSSRRSWRLETEQNLCAWHRAENTQQRPNI
FLSHPLRCSISLHGPSLTRITLLLRLLPQPSPSELATPARCSVVPRGRSG
ACCVPPPFCS*
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mRNA from alignment at S-firma_F_contig10263:4051..4429+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10263.397.1 ID=mRNA_S-firma_F_contig10263.397.1|Name=mRNA_S-firma_F_contig10263.397.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=379bp|location=Sequence derived from alignment at S-firma_F_contig10263:4051..4429+ (Sphaerotrichia firma ET2_F female)
CTGTTGTCTCCCCACGACCATGTTCGGGTGTGTGCTCCACCTCTCCAGAG
CCTCGGTCGCCGCAGCAGCAGGCGTTCATGGCGTCTTGAGACAGAACAAA
ACCTGTGTGCTTGGCATCGAGCAGAAAACACACAGCAGAGACCGAACATT
TTTCTCTCCCACCCTCTCCGTTGTTCCATCTCTCTTCATGGTCCATCACT
CACTCGCATCACCCTGCTGCTGCGGTTGTTGCCACAACCCTCGCCGAGCG
AGCTAGCCACACCAGCTCGATGTAGTGTAGTGCCGAGGGGGCGTAGCGGA
GCTTGCTGTGTCCCTCCTCCTTTCTGTTCTTAAGTTGGAACACGCGTCGA
TTCGTGATTCATTTTTCCTAGTCTAGATC
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Coding sequence (CDS) from alignment at S-firma_F_contig10263:4051..4429+

>mRNA_S-firma_F_contig10263.397.1 ID=mRNA_S-firma_F_contig10263.397.1|Name=mRNA_S-firma_F_contig10263.397.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=666bp|location=Sequence derived from alignment at S-firma_F_contig10263:4051..4429+ (Sphaerotrichia firma ET2_F female)
CTGTTGTCTCCCCACGACCATGTTCGGGTGTGTGCTCCACCTCTCCAGAG
CCTCGGTCGCCGCAGCAGCAGGCGTTCATGGCGTCTTGAGACAGAACAAA
ACCTGTGTGCTTGGCATCGAGCAGAAAACACACAGCAGAGACCGAACATT
TTTCTCTCCCACCCTCTCCGTTGTTCCATCTCTCTTCATGGTCCATCACT
CACTCGCATCACCCTGCTGCTGCGGTTGTTGCCACAACCCTCGCCGAGCG
AGCTAGCCACACCAGCTCGATGTAGTGTAGTGCCGAGGGGGCGTAGCGGA
GCTTGCTGTGTCCCTCCTCCTTTCTGTTCTTAACTGTTGTCTCCCCACGA
CCATGTTCGGGTGTGTGCTCCACCTCTCCAGAGCCTCGGTCGCCGCAGCA
GCAGGCGTTCATGGCGTCTTGAGACAGAACAAAACCTGTGTGCTTGGCAT
CGAGCAGAAAACACACAGCAGAGACCGAACATTTTTCTCTCCCACCCTCT
CCGTTGTTCCATCTCTCTTCATGGTCCATCACTCACTCGCATCACCCTGC
TGCTGCGGTTGTTGCCACAACCCTCGCCGAGCGAGCTAGCCACACCAGCT
CGATGTAGTGTAGTGCCGAGGGGGCGTAGCGGAGCTTGCTGTGTCCCTCC
TCCTTTCTGTTCTTAA
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