mRNA_S-firma_F_contig10257.390.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10257.390.1
Unique NamemRNA_S-firma_F_contig10257.390.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 1.970e-78
Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 1 
Query:   97 VDDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSG-VRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIHP 591
            VDDRLQRPMRKL+RE NG+RVLVGLLRYRRQV  ADAVRLRA LCLLGLAHDV IAQ+LEKMRITTTLSDTVR GPVV RNVE+YSQLREAAKQIIA+VAGRLSG V  SGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALA+EAGI P
Sbjct: 1116 VDDRLQRPMRKLIRESNGLRVLVGLLRYRRQVVAADAVRLRAALCLLGLAHDVHIAQMLEKMRITTTLSDTVRAGPVVGRNVETYSQLREAAKQIIARVAGRLSGTVGKSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALASEAGITP 1281
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 7.100e-76
Identity = 145/166 (87.35%), Postives = 153/166 (92.17%), Query Frame = 1 
Query:   97 VDDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSG-VRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIHP 591
            VDDRLQRPMRKL+RE NG+RVLVGLLRYRRQV  ADAVRLRA +CLLGLAHDV IAQ+LEKMRIT TLSDTVR GPVV RNVE+YS+LREAAKQIIA+VAGRLSG V  SGLMDPAVTGLERAAVVANTPITFR RELLGIIHEYLAANGLAGAAEALA+EAGI P
Sbjct: 1154 VDDRLQRPMRKLIRESNGLRVLVGLLRYRRQVVAADAVRLRAAMCLLGLAHDVHIAQMLEKMRITATLSDTVRAGPVVGRNVETYSKLREAAKQIIARVAGRLSGTVGKSGLMDPAVTGLERAAVVANTPITFRSRELLGIIHEYLAANGLAGAAEALASEAGITP 1319
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A5D6YBX6_9STRA (LisH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBX6_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.660e-35
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = 1 
Query:  100 DDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGI 585
            DD++ RP+RKL RERN I+V V LLRY+R V  ADA+RL AT  LLGL+ D QIAQ+LEKM+I   LSD +R  P+++ N + + + RE+A  +I++V  R     ++   DP V  +E+A++VA T I++   ELL +IH++L   GLA AA AL+ EAG+
Sbjct:  783 DDKMLRPVRKLARERNAIKVCVQLLRYKRSVQNADAIRLLATRALLGLSRDKQIAQILEKMQIGQLLSDLIRNEPILEENADLHVRFRESALDLISQVTHRAPNAVINEATDPTVRKIEKASIVAQTKISYDDNELLRLIHDHLVTKGLASAASALSEEAGL 944
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A8J5IYG7_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IYG7_9STRA)

HSP 1 Score: 147 bits (372), Expect = 8.370e-35
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = 1 
Query:  100 DDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIH 588
            DD++ RP+RKL RERN I+V V LLRY+R V  ADA+RL AT  LLGL+ D  I+Q+LEKM++   LSD +R  PV++ N + + + RE+A  +I+ V  R S V ++   DP V  +E+A++VANT I++   ELL +IH++L   GL  AA AL  EA IH
Sbjct:  636 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQILEKMQVGQLLSDMIRSDPVLEENADIHVRFRESALDLISHVTHRASNVVINEATDPTVRKIEKASIVANTKISYDENELLRLIHDHLVTKGLRHAASALVDEAKIH 798
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A662Y0Y0_9STRA (LisH domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0Y0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 9.040e-35
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 1 
Query:  100 DDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIH 588
            DD++ RP+RKL RERN I+V V LLRY+R V  ADA+RL AT  LLGL+ D  I+Q+LEKM+I   LSD +R  PV++ N + + + RE+A  +I+ V  R S V ++   DP V  +E+A++VANT IT+   ELL +IH++L   GL  AA AL  EA IH
Sbjct:  781 DDKVLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQILEKMQIGQLLSDMIRTEPVLEENADIHVRFRESALDLISHVTHRASNVVINEATDPTVRKIEKASIVANTKITYDENELLRLIHDHLVTKGLHHAASALVDEAKIH 943
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: G5A448_PHYSP (LisH domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A448_PHYSP)

HSP 1 Score: 147 bits (370), Expect = 1.620e-34
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = 1 
Query:  100 DDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIH 588
            DD++ RP+RKL RERN I+V V LLRY+R V  ADA+RL AT  LLGL+ D  I+Q+LEKM++   LSD +R  PV++ N + + + RE+A  +I+ V  R S V ++   DP V  +E+A++VA+T IT+   ELL +IH++L   GL  AA AL  EA IH
Sbjct:  790 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQILEKMQVGQLLSDMIRSDPVLEENADIHVRFRESALDLISHVTHRASNVVINEATDPTVRKIEKASIVASTKITYDENELLRLIHDHLVTKGLHHAASALVDEAKIH 952
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A225WHN8_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHN8_9STRA)

HSP 1 Score: 144 bits (364), Expect = 9.820e-34
Identity = 77/163 (47.24%), Postives = 109/163 (66.87%), Query Frame = 1 
Query:  100 DDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIH 588
            DD++ RP+RKL RERN I+V V LLRY+R V  AD +RL AT  LLGL+ D  I+Q+LEKM++   LSD +R  PV++ N + + + RE+A  +I+ V  R S V ++   DP V  +E+A++VANT I++   ELL +IH++L   GL  AA  LA E+ IH
Sbjct:  780 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADVIRLLATRALLGLSRDRHISQILEKMQVGQLLSDLIRSDPVLEENADIHVRFRESALDLISHVTHRASNVVINEATDPTVRKIEKASIVANTKISYDENELLRLIHDHLVTKGLHHAASVLADESKIH 942
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A484EBA6_BRELC (LisH domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBA6_BRELC)

HSP 1 Score: 143 bits (361), Expect = 2.450e-33
Identity = 77/162 (47.53%), Postives = 109/162 (67.28%), Query Frame = 1 
Query:  100 DDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGI 585
            DD++ RP+RKL RERN I+V V LLRY+R V  ADA+RL AT  LLGL+ D  I+Q++EKM++   LSD +R  PV++ N + + + RE+A  +I+ V  R S V ++   DP V  +E+A++VANT I++   ELL +IH++L   GL  AA AL  EA I
Sbjct:  785 DDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQIIEKMQVGQLLSDMIRSDPVLEENADIHVRFRESALDLISHVTHRASNVVINEATDPTVRKIEKASIVANTKISYDENELLRLIHDHLVTKGLHHAASALVNEAKI 946
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A6A3N5G8_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N5G8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.730e-33
Identity = 77/162 (47.53%), Postives = 108/162 (66.67%), Query Frame = 1 
Query:  100 DDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGI 585
            DD++ RP+RKL RERN I+V V LLRY+  V  AD++RL AT  LLGL+ D  I+Q+LEKM++   LSD +R  PV++ N + + + RE+A  +I+ V  R S V ++   DP V  +E+A++VANT IT+   ELL +IH++L   GL  AA AL  EA I
Sbjct:  789 DDKMLRPVRKLARERNAIKVCVYLLRYKSSVQNADSIRLLATRALLGLSRDRHISQILEKMQVGQLLSDMIRSDPVLEENADIHVRFRESALDLISHVTHRASNVVINEATDPTVRKIEKASIVANTKITYDENELLRLIHDHLVTKGLHHAASALVDEAKI 950
[Close]
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Match: A0A4D9D9Z0_9STRA (LisH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9Z0_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.150e-33
Identity = 86/184 (46.74%), Postives = 117/184 (63.59%), Query Frame = 1 
Query:   91 DRVDDRLQRPMRKLVRERNGIRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTLSDTVRGGPVVDR-NVESYSQLREAAKQIIAKVAGR-LSGVRLSGLMDPAVTGLERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIH---PHHPPPQTPDVGG 627
            D  +++ +  +R+ +R ++GI+VLV LLRYRR +  AD +R+ A   LLGLA +  I+Q+LEKMR+   LS+ VR GPV++R   E Y+ LR AA Q+IA+V GR  S V  S  MDPA   LE+AA+V  TPIT+ P +LL +IH++L A GL  AA  L  EAG+    P  P     D GG
Sbjct:  679 DPTEEKTRCAVRRDLRSKDGIKVLVSLLRYRRCIQAADEIRMLAARALLGLAQEPAISQILEKMRVGLLLSEVVRAGPVLERAGTEHYANLRSAALQLIARVTGRPASAVSHSDAMDPASWKLEKAAIVTRTPITYDPADLLHLIHDHLYAQGLHQAARVLEMEAGLRLPAPARPVEADGDTGG 862
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10257.390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHI0_ECTSI1.970e-7889.76LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDL7_9PHAE7.100e-7687.35LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5D6YBX6_9STRA3.660e-3548.15LisH domain-containing protein n=1 Tax=Pythium bra... [more]
A0A8J5IYG7_9STRA8.370e-3548.47LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A662Y0Y0_9STRA9.040e-3549.69LisH domain-containing protein n=2 Tax=Nothophytop... [more]
G5A448_PHYSP1.620e-3448.47LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A225WHN8_9STRA9.820e-3447.24LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A484EBA6_BRELC2.450e-3347.53LisH domain-containing protein n=1 Tax=Bremia lact... [more]
A0A6A3N5G8_9STRA5.730e-3347.53LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A4D9D9Z0_9STRA6.150e-3346.74LisH domain-containing protein n=2 Tax=Monodopsida... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10257contigS-firma_F_contig10257:888..2953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FHI0
Preferred nameVPRBP
PFAMsLisH
Max annot lvl2759|Eukaryota
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
Evalue3.23e-79
EggNOG OGsKOG1832@1|root,KOG1832@2759|Eukaryota
Descriptionhistone kinase activity (H2A-T120 specific)
COG categoryS
BRITEko00000,ko00001,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size1260
Cds size1260
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10257.390.1prot_S-firma_F_contig10257.390.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10257 888..2953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.675882-CDS-S-firma_F_contig10257:887..12221622815555.675882-CDS-S-firma_F_contig10257:887..1222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 888..1222 +
1696949412.71858-CDS-S-firma_F_contig10257:887..12221696949412.71858-CDS-S-firma_F_contig10257:887..1222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 888..1222 +
1622815555.6931076-CDS-S-firma_F_contig10257:1560..17381622815555.6931076-CDS-S-firma_F_contig10257:1560..1738Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 1561..1738 +
1696949412.731835-CDS-S-firma_F_contig10257:1560..17381696949412.731835-CDS-S-firma_F_contig10257:1560..1738Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 1561..1738 +
1622815555.7066655-CDS-S-firma_F_contig10257:2206..29531622815555.7066655-CDS-S-firma_F_contig10257:2206..2953Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 2207..2953 +
1696949412.743159-CDS-S-firma_F_contig10257:2206..29531696949412.743159-CDS-S-firma_F_contig10257:2206..2953Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10257 2207..2953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10257.390.1

>prot_S-firma_F_contig10257.390.1 ID=prot_S-firma_F_contig10257.390.1|Name=mRNA_S-firma_F_contig10257.390.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=420bp
HNVVGGGGPGGGNANSGFCRDDGGGGGGGGDRVDDRLQRPMRKLVRERNG
IRVLVGLLRYRRQVSMADAVRLRATLCLLGLAHDVQIAQVLEKMRITTTL
SDTVRGGPVVDRNVESYSQLREAAKQIIAKVAGRLSGVRLSGLMDPAVTG
LERAAVVANTPITFRPRELLGIIHEYLAANGLAGAAEALAAEAGIHPHHP
PPQTPDVGGGSRLLGPASREVAGLGMPPAAAAAAGPCRPGSLSRSSSVGG
GSSRRQDAGGAAGGGGGGGGAGHDGQDGVLSCPASTGGKRSTRGVKRLSF
SAAASGTSAAGGAKPRGSSSSSRAVSQAPSSSRAAATPLPSASERSPQEE
IEGGRERAAAKRPRLAMPGAASEPAAAVPNTNRDNTDAERKGDGSSESTE
VRADKANPLAGQARDHRSRK
back to top

mRNA from alignment at S-firma_F_contig10257:888..2953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10257.390.1 ID=mRNA_S-firma_F_contig10257.390.1|Name=mRNA_S-firma_F_contig10257.390.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2066bp|location=Sequence derived from alignment at S-firma_F_contig10257:888..2953+ (Sphaerotrichia firma ET2_F female)
CACAACGTCGTGGGCGGTGGTGGCCCCGGCGGCGGCAACGCTAACAGCGG
CTTCTGCCGTGATGACGGCGGCGGCGGCGGCGGCGGCGGCGATCGCGTGG
ACGACCGGCTGCAGCGCCCCATGCGCAAGCTCGTCCGGGAGCGCAACGGG
ATCCGGGTCTTGGTGGGGCTCCTGCGCTACCGGCGGCAGGTGTCCATGGC
GGACGCGGTGCGGCTGAGGGCGACCCTGTGCCTGCTGGGGCTGGCGCACG
ACGTCCAGATCGCGCAAGTCTTGGAGAAGATGCGCATCACCACGACGCTC
AGCGACACGGTCCGAGGGGGGCCCGTGGTTGACAGGTGGGCGGTTGAGTT
GGTTTCGTCCTGTTTTGGGGCCCCTCCAGTGGGGAGGTCGGGGGGGGGGG
GGAGGGTGTTTTGGTGGGTCCCGGCTCGCTCCGATTCGCGATAACTTGCT
GGGACTACACCTGAACAGCCATCGTGTGTGCTGTACCCCCGTGCCTACCA
CAGCTCACATGCCTTGTCGTGGCCCTTGAACAACGGCTCGGTGGGGAAAA
AATGTACAACAGGTAGCCGAAGCAAGAGTTTCCAGACCTCCTCACCCTAC
CGTTGCCATCACCAAACTCGCTCTTCACATCCCCGTCTTGTTTCCCTTCG
TCTTTACGTGGTGCGGTCGATAGAAACGTGGAGAGCTACTCGCAGCTGAG
AGAAGCGGCCAAGCAGATCATCGCGAAGGTGGCCGGCCGCCTGAGTGGGG
TGCGCCTGAGCGGCCTGATGGACCCCGCGGTGACCGGCCTCGAGCGAGCC
GCCGTTGTCGCCAACACGCCGATCACGTTTAGGCCGAGGGAGCTGCTGGG
GGTGAGTCCCGTCCTTTCCGTCGCTGCGTGCAGAGTCTGTTCCTTGTTCC
TGTGCGGGTGATTTTCCTGTTCTTTTGTTCCTCCCGCAGGCTGTGTGTGT
CTTCTACTGGCTGGGCGTGTCCTTTTCTGTCATAATCTCCACCTAAATAC
GTAGTCTCGTTTGTTTCGTGTTGGCTGCAAGTATCCCTAGATGCGTGCCC
TTCCGCTCGGGGTGATTGCGTTGTAGATCCTCGCGGGGAGACGTTTCCCT
CTTGCGTTGTCCTCAGCAGCGCCGTTTGGTCACTCCTCGCCCTTAGCCTC
GTCTCCGCGTTGTACAACTAGAGAACTCGTCATTCATCGTCTACGGCTAC
TCGACCCAGGAGTATACCTCTTGCGTGCGTGGGGTTTCCGAGCGTTTTTG
TTTGACGTGCGCGGCAGTACGACGCCTTTCGCTCTCTACCCCGTTCCGAA
TCAACCACCCGCCCTCCAGATAATCCACGAGTACCTCGCAGCCAACGGAC
TCGCCGGCGCCGCGGAGGCGCTGGCCGCCGAAGCGGGGATACACCCGCAC
CATCCCCCCCCCCAGACGCCTGACGTTGGTGGCGGGTCTCGACTCCTAGG
CCCGGCTAGCAGGGAGGTCGCCGGCTTGGGCATGCCCCCGGCGGCGGCAG
CGGCGGCTGGGCCGTGTCGACCGGGGTCGCTCTCTCGCTCCAGCTCCGTT
GGTGGCGGCAGTAGCAGAAGACAAGACGCGGGGGGGGCAGCCGGCGGCGG
CGGCGGCGGCGGCGGTGCAGGCCACGATGGCCAAGACGGGGTGTTGTCGT
GTCCCGCGTCTACGGGGGGCAAGAGGAGCACTCGAGGGGTCAAGAGGTTG
TCGTTTTCGGCTGCCGCGAGCGGCACGTCGGCGGCGGGTGGAGCAAAGCC
CAGAGGTAGTAGCAGCAGTAGCCGTGCTGTCTCGCAGGCGCCGTCGTCAT
CACGGGCGGCTGCTACCCCTCTCCCTAGTGCCTCGGAACGCTCCCCGCAG
GAGGAGATAGAGGGCGGGCGGGAGAGAGCCGCGGCAAAGCGCCCCAGGCT
TGCGATGCCCGGTGCGGCGAGCGAACCCGCCGCGGCGGTGCCGAACACCA
ACAGGGACAACACCGACGCCGAGAGGAAGGGTGACGGCAGCAGCGAGAGC
ACTGAGGTCAGGGCCGACAAGGCGAACCCGCTAGCGGGACAAGCGCGAGA
CCACCGGTCACGAAAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10257:888..2953+

>mRNA_S-firma_F_contig10257.390.1 ID=mRNA_S-firma_F_contig10257.390.1|Name=mRNA_S-firma_F_contig10257.390.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2520bp|location=Sequence derived from alignment at S-firma_F_contig10257:888..2953+ (Sphaerotrichia firma ET2_F female)
CACAACGTCGTGGGCGGTGGTGGCCCCGGCGGCGGCAACGCTAACAGCGG
CTTCTGCCGTGATGACGGCGGCGGCGGCGGCGGCGGCGGCGATCGCGTGG
ACGACCGGCTGCAGCGCCCCATGCGCAAGCTCGTCCGGGAGCGCAACGGG
ATCCGGGTCTTGGTGGGGCTCCTGCGCTACCGGCGGCAGGTGTCCATGGC
GGACGCGGTGCGGCTGAGGGCGACCCTGTGCCTGCTGGGGCTGGCGCACG
ACGTCCAGATCGCGCAAGTCTTGGAGAAGATGCGCATCACCACGACGCTC
AGCGACACGGTCCGAGGGGGGCCCGTGGTTGACAGCACAACGTCGTGGGC
GGTGGTGGCCCCGGCGGCGGCAACGCTAACAGCGGCTTCTGCCGTGATGA
CGGCGGCGGCGGCGGCGGCGGCGGCGATCGCGTGGACGACCGGCTGCAGC
GCCCCATGCGCAAGCTCGTCCGGGAGCGCAACGGGATCCGGGTCTTGGTG
GGGCTCCTGCGCTACCGGCGGCAGGTGTCCATGGCGGACGCGGTGCGGCT
GAGGGCGACCCTGTGCCTGCTGGGGCTGGCGCACGACGTCCAGATCGCGC
AAGTCTTGGAGAAGATGCGCATCACCACGACGCTCAGCGACACGGTCCGA
GGGGGGCCCGTGGTTGACAGAAACGTGGAGAGCTACTCGCAGCTGAGAGA
AGCGGCCAAGCAGATCATCGCGAAGGTGGCCGGCCGCCTGAGTGGGGTGC
GCCTGAGCGGCCTGATGGACCCCGCGGTGACCGGCCTCGAGCGAGCCGCC
GTTGTCGCCAACACGCCGATCACGTTTAGGCCGAGGGAGCTGCTGGGGAA
ACGTGGAGAGCTACTCGCAGCTGAGAGAAGCGGCCAAGCAGATCATCGCG
AAGGTGGCCGGCCGCCTGAGTGGGGTGCGCCTGAGCGGCCTGATGGACCC
CGCGGTGACCGGCCTCGAGCGAGCCGCCGTTGTCGCCAACACGCCGATCA
CGTTTAGGCCGAGGGAGCTGCTGGGGATAATCCACGAGTACCTCGCAGCC
AACGGACTCGCCGGCGCCGCGGAGGCGCTGGCCGCCGAAGCGGGGATACA
CCCGCACCATCCCCCCCCCCAGACGCCTGACGTTGGTGGCGGGTCTCGAC
TCCTAGGCCCGGCTAGCAGGGAGGTCGCCGGCTTGGGCATGCCCCCGGCG
GCGGCAGCGGCGGCTGGGCCGTGTCGACCGGGGTCGCTCTCTCGCTCCAG
CTCCGTTGGTGGCGGCAGTAGCAGAAGACAAGACGCGGGGGGGGCAGCCG
GCGGCGGCGGCGGCGGCGGCGGTGCAGGCCACGATGGCCAAGACGGGGTG
TTGTCGTGTCCCGCGTCTACGGGGGGCAAGAGGAGCACTCGAGGGGTCAA
GAGGTTGTCGTTTTCGGCTGCCGCGAGCGGCACGTCGGCGGCGGGTGGAG
CAAAGCCCAGAGGTAGTAGCAGCAGTAGCCGTGCTGTCTCGCAGGCGCCG
TCGTCATCACGGGCGGCTGCTACCCCTCTCCCTAGTGCCTCGGAACGCTC
CCCGCAGGAGGAGATAGAGGGCGGGCGGGAGAGAGCCGCGGCAAAGCGCC
CCAGGCTTGCGATGCCCGGTGCGGCGAGCGAACCCGCCGCGGCGGTGCCG
AACACCAACAGGGACAACACCGACGCCGAGAGGAAGGGTGACGGCAGCAG
CGAGAGCACTGAGGTCAGGGCCGACAAGGCGAACCCGCTAGCGGGACAAG
CGCGAGACCACCGGTCACGAAAGATAATCCACGAGTACCTCGCAGCCAAC
GGACTCGCCGGCGCCGCGGAGGCGCTGGCCGCCGAAGCGGGGATACACCC
GCACCATCCCCCCCCCCAGACGCCTGACGTTGGTGGCGGGTCTCGACTCC
TAGGCCCGGCTAGCAGGGAGGTCGCCGGCTTGGGCATGCCCCCGGCGGCG
GCAGCGGCGGCTGGGCCGTGTCGACCGGGGTCGCTCTCTCGCTCCAGCTC
CGTTGGTGGCGGCAGTAGCAGAAGACAAGACGCGGGGGGGGCAGCCGGCG
GCGGCGGCGGCGGCGGCGGTGCAGGCCACGATGGCCAAGACGGGGTGTTG
TCGTGTCCCGCGTCTACGGGGGGCAAGAGGAGCACTCGAGGGGTCAAGAG
GTTGTCGTTTTCGGCTGCCGCGAGCGGCACGTCGGCGGCGGGTGGAGCAA
AGCCCAGAGGTAGTAGCAGCAGTAGCCGTGCTGTCTCGCAGGCGCCGTCG
TCATCACGGGCGGCTGCTACCCCTCTCCCTAGTGCCTCGGAACGCTCCCC
GCAGGAGGAGATAGAGGGCGGGCGGGAGAGAGCCGCGGCAAAGCGCCCCA
GGCTTGCGATGCCCGGTGCGGCGAGCGAACCCGCCGCGGCGGTGCCGAAC
ACCAACAGGGACAACACCGACGCCGAGAGGAAGGGTGACGGCAGCAGCGA
GAGCACTGAGGTCAGGGCCGACAAGGCGAACCCGCTAGCGGGACAAGCGC
GAGACCACCGGTCACGAAAG
back to top