mRNA_S-firma_F_contig1025.382.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1025.382.1
Unique NamemRNA_S-firma_F_contig1025.382.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: D7G5S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S6_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 4.740e-139
Identity = 198/216 (91.67%), Postives = 204/216 (94.44%), Query Frame = 3 
Query:  273 MMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTLSIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHLSLPQS 920
            M+DGGS YISIGDMYKGNKIILPDRWKGKG SVP +PKNAENGNFSRLEY+SEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEK IMEKHRDP KDQA+AQ+YEKD AE R FP+GLKEIEHLYDVGR QVTEFDPKNSRDRFYTLSI QEKRRGPYRTMAQDIG GAWGH YQSPEHGPIHHVKFFYDKSHLSLPQS
Sbjct:    1 MVDGGS-YISIGDMYKGNKIILPDRWKGKGLSVPQLPKNAENGNFSRLEYRSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEKHRDPAKDQAAAQKYEKDCAEHRAFPDGLKEIEHLYDVGRSQVTEFDPKNSRDRFYTLSIGQEKRRGPYRTMAQDIGSGAWGHTYQSPEHGPIHHVKFFYDKSHLSLPQS 215
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: A0A836CAI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI9_9STRA)

HSP 1 Score: 285 bits (729), Expect = 6.800e-91
Identity = 144/223 (64.57%), Postives = 172/223 (77.13%), Query Frame = 3 
Query:  243 MYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTLSIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHLSL 911
            MY+TKR+N  + +G   YIS+GD Y+G K  LP RWKGKGF V  +P NAENGNFS+LEYKS  + +ME++SKTQP   RK GFGTKDAFR GEFTATIRTEQYRD LR E+TIM K  DP +D    +R E+     RTF EGL E +HLYDVGR QVT+FDPK+SRDRFYT  I++E+R G +RTMAQDIGDGAW HKY+SPE GPIHH K F+D+SHL++
Sbjct:    1 MYSTKRVNDKIAEG---YISVGDPYRGTKDTLPGRWKGKGFKVLQVPVNAENGNFSKLEYKSCAFQEMERYSKTQP--DRKKGFGTKDAFRRGEFTATIRTEQYRDQLRKEQTIMAKFCDPVRDSEIIRRAEEKQRSTRTFCEGLPETDHLYDVGRTQVTKFDPKHSRDRFYTPDINRERRMGGFRTMAQDIGDGAWSHKYKSPEFGPIHHTKLFWDRSHLTV 218
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: D7FNL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL0_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 3.110e-72
Identity = 119/223 (53.36%), Postives = 156/223 (69.96%), Query Frame = 3 
Query:  243 MYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTLSIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHLSL 911
            MY+TKR+NKN+++G + +IS+GD YK  +  LP RWKGK F     P NA+NGNF++L+Y SEP+ + E+F+KTQPL KR LGFGTKDAF+ GEFTATIRT+QYR++LR E+ +M   R+   ++    + +   A  R F EG +EI+HLYDVGR    EF+P    D FY       KR GPYRTMAQDIG+ AW H+  +PE GPI H+K FYD+SHL +
Sbjct:    1 MYSTKRVNKNIVEG-NRFISVGDPYKELRR-LPGRWKGKQFQTEGCPANADNGNFAKLKYSSEPFQETERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEV 221
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: A0A6V1R9I1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9I1_HETAK)

HSP 1 Score: 221 bits (562), Expect = 7.180e-66
Identity = 117/221 (52.94%), Postives = 146/221 (66.06%), Query Frame = 3 
Query:  243 MYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTLSIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHL 905
            MY TKR+NKN +D   SYISI D Y  N+  LP RWK K F+V  +P     G F++  Y  +PY +   F K QP D RKLGFGTKDA + GEFTATIRTEQYR+ L+ E+ I++  RDP  +  + +R  K   E+R+FPEGL E   LYD+GR  VT+FDP+ SRD FYTL  D+ KR G ++T A  +G GAW H+Y  PE GPI +VK FYDK HL
Sbjct:    1 MYATKRINKNKID--VSYISIQDPYVENRK-LPPRWKEKQFAVAHLPNPENGGYFAKKTYAPDPYKEAVHFIKEQPADSRKLGFGTKDASKRGEFTATIRTEQYRETLKKEQRILDHQRDPAAETMTLERARK-REEERSFPEGLSETRRLYDIGRQNVTDFDPRQSRDTFYTLRKDRPKRLGHHQTAAAAVGSGAWDHEYSKPEFGPIPYVKNFYDKGHL 217
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: A0A7S2XZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN8_9STRA)

HSP 1 Score: 221 bits (562), Expect = 7.660e-66
Identity = 112/224 (50.00%), Postives = 149/224 (66.52%), Query Frame = 3 
Query:  243 MYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQ-ASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTLSIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHLSL 911
            MY T R +KN++D  +SY++IGD Y      +P RWK K F V   P   ++G F   +Y+ E Y +ME + K+QP D+RK GFG+ DA R GEFT+TIRTEQYR+ L+ E  + EK RDP+ ++   A   E++    RTF EGL E  HLYD+G+ QVTEFDP++SRD FY +  D+ KR G + T +Q +GDGAW HKY  PE GPI +VK FYD+SHL +
Sbjct:    1 MYRTHRTHKNLLDKDASYVTIGDPYIDPNRTIPPRWKEKQFVVQHKPALKQSGYFEEFKYQPEEYKEMESYLKSQPQDRRKNGFGSHDATRRGEFTSTIRTEQYRETLKQELRVHEKQRDPESERKVMAIAAEREMG--RTFTEGLTETRHLYDIGKKQVTEFDPRSSRDTFYVMRKDRPKRLGAHTTSSQAVGDGAWDHKYTKPEFGPIPYVKNFYDRSHLQI 222
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: F0YHZ6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHZ6_AURAN)

HSP 1 Score: 197 bits (500), Expect = 1.420e-56
Identity = 113/229 (49.34%), Postives = 137/229 (59.83%), Query Frame = 3 
Query:  243 MYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFS----RLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTLS--IDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHLSL 911
            MYTTK +NKN+      YI++GD Y G K  LP RWK K F VP +P NA  G F        Y+SE Y +   + KTQP DKRKLGFGT DA R  EF+ TIRTEQYR+ L+ E        D D   A  +  +K+ A+ + F E  KEI +LYDVGR   TEFDPKN RD+FY++      EKR G  RT +QDIGDGAW  KY  PE      VK F+D+SHL +
Sbjct:    1 MYTTKFMNKNVTVDNGRYITVGDPYIGTKDKLPLRWKEKQFHVPQVPSNAGEGYFGFSGKAFSYQSELYTEQRPYMKTQPPDKRKLGFGTHDASRRDEFSQTIRTEQYRETLKKEGRANNNGYDED---AIEELMKKENAKVKKFVETKKEIGNLYDVGRSIHTEFDPKNGRDQFYSMKHGYTYEKRMGNNRTASQDIGDGAWNFKYSKPEFSAPSQVKNFFDQSHLDI 226
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: A0A7S2EF12_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EF12_TRICV)

HSP 1 Score: 177 bits (450), Expect = 4.690e-49
Identity = 99/239 (41.42%), Postives = 146/239 (61.09%), Query Frame = 3 
Query:  243 MYTTKRLNKNMMDG-GSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSRLEYKSEPYADM-EKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEG-----LKEIEHLYDVGRGQVTEFDPKNSRDRFYTL-----------SIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHL 905
            MY+TK ++KN+      +Y SIGD Y+ +   LP RWK K F  P  PKNA NG F + +Y  +PY +  E++SKTQPL+KR+LGFG+ DAF+PGEFT+   TE+YR+++R E+ +++  RD  +++   Q+        RT P+      LKE + LYDVGR  VT + P+++RD FY L            +D  +R G +R M+  IG+ AW HKY  PE G + +++ FYD+ H+
Sbjct:    1 MYSTKSIHKNINPNYQQTYTSIGDPYRNSVEELPSRWKKKQFVTPKCPKNAYNGLFVKPQYTPDPYTERAEQYSKTQPLEKRRLGFGSHDAFKPGEFTSDKATERYRNVVRQEQKLLDSVRDEMRERELIQKLRD---RPRTTPKDKLGKDLKEPKFLYDVGRTHVTLYSPQSTRDSFYKLPKHAPVDPKLKGLDPIRRLGSHRPMSASIGEQAWRHKYAKPEFGQVKYIEKFYDRGHI 236
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: A0A7S2CP23_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP23_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.760e-48
Identity = 103/240 (42.92%), Postives = 139/240 (57.92%), Query Frame = 3 
Query:  243 MYTTK-RLNKNMMDGGSS-----YISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSR----LEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTLSIDQE-------KRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHLSL 911
            MY+TK   NKN ++ G +     YISIGD Y      LP+RWK   F +  +PKNA NG F        Y S+PY +   +   QP +KR +GFGTKDA +  EF ATIRTEQYR+ L+ E TI+++ RD +K+ A  ++     +E   F  GL E E+LYD+GR Q T F+PK++ DRFY   ++++        R GPY T +  IG GAW   Y  P+ G +   K F DKSHLS+
Sbjct:    1 MYSTKIASNKNAVEMGDTKPHDKYISIGDPYVDRVGKLPERWKKPQFQIDRMPKNAGNGYFGYNNKDFTYASDPYKETRSYKAEQPPEKRTMGFGTKDASKRDEFAATIRTEQYRETLKRENTILDEQRDREKEAALMEKLRNTKSE---FVPGLTETEYLYDIGRTQSTPFNPKSAGDRFYQRRLNKDLDPKQGSMRLGPYMTSSSQIGTGAWETPYSKPQFGTVSPTKNFNDKSHLSV 237
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: A0A8J2SVQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVQ1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.130e-42
Identity = 100/240 (41.67%), Postives = 126/240 (52.50%), Query Frame = 3 
Query:  225 TNPEATMYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNAENGNFSRLE----YKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASA-QRYEKDFAEQRTFPE------GLKEIEHLYDVGRGQVTEFDPKNSRDRFYTL--SIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHL 905
            TN  A MY  K  +  +      YISIGD Y      LP RWK K     M PKNA NG F  +     Y  + Y +   ++KTQP D RKLGFGT DA +  EFT  +RTEQYRDLL+ EK I++++       A   ++  K  AE     E      GL     LYD+GR + T+FDPK   D FY    +  +E RRG YR+M+QDIGDGAW  + +    G  H    FY KSH+
Sbjct:   24 TNHLAGMYADKFTHPRLQCEAGRYISIGDPYVDEAERLPARWKEKQMGTTMYPKNAGNGYFGNMGKPFMYMPDKYVEQLPYAKTQPYDTRKLGFGTHDASKRDEFTDRVRTEQYRDLLKREKRILQRNEQKRGGLAEQIRKAHKKLAEAAVEEERQREVCGLSAAPFLYDIGRSRETQFDPKTKTDCFYNAYQARKREMRRGGYRSMSQDIGDGAWDLQQKRETFGRSHATAAFYSKSHI 263
[Close]
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Match: A0A8K1FR81_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR81_PYTOL)

HSP 1 Score: 150 bits (380), Expect = 4.860e-39
Identity = 98/232 (42.24%), Postives = 132/232 (56.90%), Query Frame = 3 
Query:  243 MYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIP-KNAENG--NFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEHLYDVGRGQVTEFDPKNSRDRFYTL---SIDQEKRRGPYRTMAQDIGDGAWGHKYQSPEHGPIHHVKFFYDKSHLSLPQS 920
            MYTTK LNKN+     SY++IGD Y+   +I     + KG  +  IP KN  NG   F +  Y S+P  D   + KTQP+DKRK GFG+KDA R  EF + +RTEQYR+ L  E  I++K +    ++   +  E    EQRTFPEGL E + LYD+GR Q TEF+ K+ RD FYT+   +   ++  GP+   ++ IG GA       P        K FYD+SHL + QS
Sbjct:    1 MYTTKVLNKNI---AGSYLTIGDPYRDPHLIDGKGPRHKGKQMTTIPAKNTCNGIGYFEKKTYSSDPLQDTTMYLKTQPMDKRKSGFGSKDASRREEFMSHVRTEQYRETLTKEMEIVDKQKKALSEEGRFEELEA-LEEQRTFPEGLTETKFLYDIGRTQNTEFNQKSHRDTFYTMRTGNSQYKRNNGPFMLTSESIGIGADDVSNNRPTPKGAS-TKQFYDRSHLHVGQS 227
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1025.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G5S6_ECTSI4.740e-13991.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAI9_9STRA6.800e-9164.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FNL0_ECTSI3.110e-7253.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1R9I1_HETAK7.180e-6652.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZN8_9STRA7.660e-6650.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YHZ6_AURAN1.420e-5649.34Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2EF12_TRICV4.690e-4941.42Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2CP23_9STRA1.760e-4842.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SVQ1_9STRA5.130e-4241.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1FR81_PYTOL4.860e-3942.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1025contigS-firma_F_contig1025:12201..17041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FNL0
Max annot lvl2759|Eukaryota
Evalue1.28e-76
EggNOG OGs290NK@1|root,2S4NB@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_008940.1
Exons7
Model size1468
Cds size687
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.0449288-UTR-S-firma_F_contig1025:12200..127391622815555.0449288-UTR-S-firma_F_contig1025:12200..12739Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1025 12201..12739 -
1696949412.2723982-UTR-S-firma_F_contig1025:12200..127391696949412.2723982-UTR-S-firma_F_contig1025:12200..12739Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1025 12201..12739 -
1622815555.139605-UTR-S-firma_F_contig1025:16799..170411622815555.139605-UTR-S-firma_F_contig1025:16799..17041Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1025 16800..17041 -
1696949412.3658893-UTR-S-firma_F_contig1025:16799..170411696949412.3658893-UTR-S-firma_F_contig1025:16799..17041Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1025 16800..17041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.0572197-CDS-S-firma_F_contig1025:12739..128561622815555.0572197-CDS-S-firma_F_contig1025:12739..12856Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 12740..12856 -
1696949412.2846553-CDS-S-firma_F_contig1025:12739..128561696949412.2846553-CDS-S-firma_F_contig1025:12739..12856Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 12740..12856 -
1622815555.0704453-CDS-S-firma_F_contig1025:13733..138291622815555.0704453-CDS-S-firma_F_contig1025:13733..13829Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 13734..13829 -
1696949412.3022673-CDS-S-firma_F_contig1025:13733..138291696949412.3022673-CDS-S-firma_F_contig1025:13733..13829Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 13734..13829 -
1622815555.0829885-CDS-S-firma_F_contig1025:14430..145171622815555.0829885-CDS-S-firma_F_contig1025:14430..14517Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 14431..14517 -
1696949412.3144746-CDS-S-firma_F_contig1025:14430..145171696949412.3144746-CDS-S-firma_F_contig1025:14430..14517Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 14431..14517 -
1622815555.0931182-CDS-S-firma_F_contig1025:14962..150951622815555.0931182-CDS-S-firma_F_contig1025:14962..15095Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 14963..15095 -
1696949412.3285878-CDS-S-firma_F_contig1025:14962..150951696949412.3285878-CDS-S-firma_F_contig1025:14962..15095Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 14963..15095 -
1622815555.1063352-CDS-S-firma_F_contig1025:15680..158081622815555.1063352-CDS-S-firma_F_contig1025:15680..15808Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 15681..15808 -
1696949412.3373055-CDS-S-firma_F_contig1025:15680..158081696949412.3373055-CDS-S-firma_F_contig1025:15680..15808Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 15681..15808 -
1622815555.116906-CDS-S-firma_F_contig1025:16187..162961622815555.116906-CDS-S-firma_F_contig1025:16187..16296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 16188..16296 -
1696949412.346252-CDS-S-firma_F_contig1025:16187..162961696949412.346252-CDS-S-firma_F_contig1025:16187..16296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 16188..16296 -
1622815555.1265576-CDS-S-firma_F_contig1025:16782..167991622815555.1265576-CDS-S-firma_F_contig1025:16782..16799Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 16783..16799 -
1696949412.3571062-CDS-S-firma_F_contig1025:16782..167991696949412.3571062-CDS-S-firma_F_contig1025:16782..16799Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 16783..16799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1025.382.1prot_S-firma_F_contig1025.382.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1025 12740..16799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1025.382.1

>prot_S-firma_F_contig1025.382.1 ID=prot_S-firma_F_contig1025.382.1|Name=mRNA_S-firma_F_contig1025.382.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=229bp
MYTTKRLNKNMMDGGSSYISIGDMYKGNKIILPDRWKGKGFSVPMIPKNA
ENGNFSRLEYKSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIR
TEQYRDLLRAEKTIMEKHRDPDKDQASAQRYEKDFAEQRTFPEGLKEIEH
LYDVGRGQVTEFDPKNSRDRFYTLSIDQEKRRGPYRTMAQDIGDGAWGHK
YQSPEHGPIHHVKFFYDKSHLSLPQSDT*
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mRNA from alignment at S-firma_F_contig1025:12201..17041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1025.382.1 ID=mRNA_S-firma_F_contig1025.382.1|Name=mRNA_S-firma_F_contig1025.382.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4841bp|location=Sequence derived from alignment at S-firma_F_contig1025:12201..17041- (Sphaerotrichia firma ET2_F female)
GCCAACAACACACAGCCGGCGGCGTATCTCGGGGAAAAAATTCAAAAAAA
ATCGGGGAATTGGTGAATGGCGGTCCGCTCGAGGCGGTGCAACTATGGAA
TGCGGCGCGACTACGGTACTGTATGCCTCCCAACCGGCACGTGCGGCGGC
CGGCAGAGAGCGGCAGAGCCCACGCTCCTCATCCCTCATTCCAAATATAG
CTCCCTTTGCCTCGTCCCCTGCGGACGAACCCCGAGGCTACCATGTACAC
GACCAAGAGGTGAGGCGTATGAGCTGTCTTTGCACACCATCAGAAAGAAC
GGTCAGGGTTGGTTGTCGTATGTCTACCGTAAATTCTTCACAACATCGTT
GCTTCTGGACGGTTTGGCGCCGATGTGTTTGAGCATGTTACTGCTTTACG
CCCAAAGGCGCAGCACGTAGGTACTCCCAATACAACAACAGCAACACAAA
CCAGGTATCGTTTTGCCGTCACGTCGATGGTCGTTTCCAATCGTTGCTAA
TACATTGGCGAGGCTGTTGCAACAACATCATTCCTCCCGCTTGTTTTGTC
CGGCTGGCACACGGGCGGCTTCTTTGTCACGGGCAGTATGTATTGCAATA
AGTACGTACCCCAGGTTTCCAACAGCAGTCGGTCTGAGCGCGAACCAGCA
CCAAGTTCTTCAGCTAACCACCATGGCGACCCTTGTCGACCTAACCCTCT
CAAGTCTGCAATGAACCAGTCTCCATGATGCCATCCTACGCGCAGGCTGA
ACAAGAACATGATGGACGGCGGGTCGTCCTACATCAGCATCGGTGATATG
TACAAGGGAAACAAAATCATTCTTCCAGACCGATGGAAGGGCAAGGGTTT
TTCGGTGAGTACAAGATTGCCTCTAGACTACACTCTCCAGGACACACAAC
AAACAAACGCACGCCGAATCTCCTCGAATCGAAGGTGGACGCAATGCTTC
CCATTCGGGTGCCCTCGCAGACACGTACATACCTGTTTCTGCGGGCGAAA
GCCTTCGGGAACAGACCTATAATAGACGCCTTTTCTAACAAAACGGCTGA
GAGCATCACCCGCACAAGTTGTTGTCGGCACAATAACAAGCATCCGTGAT
CGGGATTCGAAAGTATTCTATTGGTATGACGGACACAAGGGAAGGTGTCG
CGATGTGTTGGATGTCGCACTGCCGGATGAAGGTCGGATTAAACCCCCGG
GAAATGTGGTCCTGCCTGCGATTACTTCACCAGGTGCCCATGATCCCCAA
GAACGCCGAGAACGGTAATTTCAGCCGGCTGGAGTACAAGAGCGAGCCGT
ACGCAGACATGGAGAAGTTCTCCAAGACCCAGCCTCTCGACAAGAGGAAG
CTCGGCTTCGGGTGAGTGAGAGTCAAAATCAAGCAAGACTTCCGGAATAC
GTTTTGAGCCCACGGAGTCCCGTCTCCAATGTGGGGAGGTTCTGTCTTTG
ATTCCATGATTTTCTTTCAAAACTTTGCGGTCTAGTTAGCACATGTGCGC
GGACAATCCACGAGCACCGCCAGCCATCCCCCCATCGTAGAATTGCGCAG
ACTCTTGCGGTGCTTGACAGCGGTTCAAACCTTTAGGCAGCAACACCGGG
TACAAGCGCACCCCACACAACTGAAGGGGAAGGTTGATTGTCGATTCCTT
ATTTCCCCCCCCGCCCCGATCCAAACGACCGACGACAGCAACGCGACCGA
CTTCCACGCCACCGTAAAACCACTGGCGTAGACTAAGCGCTTGGATGAAA
GGATAGGAATCGCCTCGTGGTCAGTCAGCGAGTCAGTGGTGGCTGGAGGT
ATCAGCGAGAAAGAGACAACGCCCCCGCCACCGTACTCGCGCGGCTGGAC
TCTTGACTCGATCGATCCAACCATCGGCCGAGCTTCCGTCCAAACCTGCA
TCTGTGCAACAACACCGCATCTATCTCCTCTTCCCTCTCCAATCAGAACC
AAAGACGCCTTCCGGCCTGGCGAGTTCACGGCGACGATTCGGACGGAGCA
ATATCGCGACCTGCTGCGCGCGGAGAAGACCATCATGGAGAAGCACCGCG
ATCCAGACAAGGACCAGGCTTCCGCCCAGGTGAGGAGAGAATGAGAATGA
GAATGAGAATGACAAATGAGAATGATTATCAGAGCGTTTGTTTTTGTGCA
TACGTCTAGGACTTTCGATGCCTGCTTTCTGTAGGTCTTGGGGGGCGCGC
CTTGTTGCCAGTGGCGCCTTTCGTGGTGCGTTTTGTGGTGTATTTTGTGG
TGCACTCTTTCCGGGCGGTCTGCTTGTGCACCAGAGCAAACATGCCTCTC
CGTAGCGCTCTTAGGGCGGCAGGAAGCGCGAAGAGCCCCGAGATCAAACG
CTCGAAGAAGTTTCAGGGGCAGTCTTCGGCTAGCCGCGGCGTTGACATGC
GTGCGGAGGTTGCAAACTTCCTTGGTGTTCCCTGGGTGCAGGTATTGTGG
ATCTGTTATCTCCGGTGCAAGAACAACGCCCCGCTTCTTGTGTTTTCTCT
GTCGGCATGCATGGGCACCGGCAGAGGTACGAAAAGGACTTTGCGGAGCA
GCGCACGTTTCCCGAGGGGTTGAAGGAGATCGAGCACCTGTACGACGTCG
GCCGGGGGCAGGTAAATCGTAATCTAATCATCGCATCGAGTCGTGAGCTA
TTGTAACATCGAAGAGGTTTCGCAGGGTGTGAATTGAATGGAACACCAAC
ACTCGCCCGTAGAACCCACGACCACGGATTCGATTCCCGATACAAGTCGA
TCGATAGCTGCAACTGCTCCAGCAGTTTCGACACACGAAAAACGGGATCC
ATGTGGGCATGTGGGGGATTAGTGTATTGCTGCACCAGTTCCGGAACATG
AAAAACGGGGGGTTAAGTTTAGTGTGTTGCTGCAGCAGTTCCGGAACATG
AAAAACGGGATCCATGTGGGGGGTTTCTGTTTTGCTGCACGGCGGCCTTG
TCGAACAACTTCGCCCGGCTAGGAAACGCCTCGTGCTGCACGATGGGTTG
TACTTTATTTAGGCACCTTTGATCGTGATTCTAAGATGTTAGCCGACCCA
GCGCCCACGGGTGGGCGGCCCCGCAGAAAGAAGGAAAATGGCTCCCCGTT
TTTAAGGGTCCGCCGTCCTCTTGCAGTTCAACCAAAACATACGTTCCTCC
TTGTCTTTGCCTCGCTGCCTTTCGCCTTTCCTTCTTCCTGATTTGGTTTT
TTGCTTTCCCAGGTGACCGAGTTCGACCCGAAGAACTCTCGGGACAGGTT
CTACACGCTGTCCATCGACCAGGAAAAACGGCGGGGACCCTACCGCACGA
TGGCTCAGGTAACTTGATGTTTGTTTCCCTCCCTTTTCTGGGTTCTGCCG
TCTGCCCCACTGGCCCCTATCCTCCACTACGACCAGTTAGACGGCCCGAG
CGGGGTCACACACACAGGAGGGGGGGGATGGACCCCCTCCTGAGGTACAG
AGCCTATCGTTCCTTCGTTCAATCCGTCAAGGTTTAGTTAGCTCTCCCGC
ACCCCTTGTTGATCAATCGATCGATCGATCAGACTGCGGGGGGCGAACCA
CTGTGTCGTAGGTGTACATACAACACGGGGCTGTGGTGAAGGCACATGGC
GCACTCCCGCCTGTCGGTCGTGTCAGTGGGTATCCGCTCGCTTCGCTGAC
GGAAGGAATCTCCTCCGTCTTCAAGCGTTGCACGCGGCGAACAGTCAGCG
TAGCAAGACGATTTTGTCGGTTGCTCGGAAGGGTGTTGTTGTCTCGCACT
TGTCTCGTCTGAAAATAGATTCGAGGTCGAAAGGGAGGGTTCTCTTCTCT
TTCCAGAAAACCCAAAAGGCGTTTATTAGATGAAGAACACCATACCTTCG
TGATCGCGAATAGCTTGGCTGTTGACTTGATTCGATTCACCATTCTTGGC
GTTTTCTGCGGGAAGAAGCATCCTATCCTCATTCTCATTCTCGTTATCAT
TCTTATTCTCGTTCTCGTTCTCATTCTCGTCCTCGTTCTCGTTCTCGTTC
TCATTCTCATTCTCGTTCTCGTTCTCATTCTCATTCTCCTTCTCGTTCTC
ATGCTCGTTCTCATTCTCGCGTCTGTCGTGTGTCCTCGTTCTTGCCCGTC
TACTCGCCAAACCTACCCGCGGTGCTTTTTCGGTGCTGCGCGGTTCCGTT
GGTTGTTCGATTCTTCGCTTCTTCGATTGTTCCAGGATATCGGGGACGGT
GCGTGGGGCCACAAGTACCAGTCGCCGGAGCACGGGCCCATACACCACGT
CAAGTTCTTCTACGACAAGAGCCACCTTTCCCTGCCGCAGAGCGACACGT
AGGGCGGAGCAGCAGTAGCACGCCACCGGAGCTGCCGACCTTCGACGTTA
CTAGGAGTATCGGCCGTGCATGGGGCGATATGGTGGGGATGGAGTGCCAA
ACTATCGAGCTGAGGGAGGCTATTCATAGCATGCGCCAACGGGCCTAGAG
GAAAAGGGGTAAGGTCGAAGGGGGCGCTGCGTGCATTGTCTATAGCCCCT
GTTTCTTGCCACGGAGCTGCCGGCGTTGCTAGGAGTATCGTATCGGCCGT
GCTTGGGGTGATATGGTGGGGATCGAGTGCCAAGCTGTCGAGCAAGCGGG
AGTGAGAGGAATGGAGACTATTCATAGCATGCAGCAACGGGCCTAGACAA
AAAGGGGTACGGTCGAAGGGGGCGCTACAGTAGGCGCAGTGTCGAGCCTC
TCTTTTCTCAGTCATAAGTGTTGTGTTGGTTGCAACAAGAGGGAACCGGC
GTACATAGGACCGTAGCTTTGTATGTAGCCAAGAGTGCCAGATGCCAAGC
GAGAAAATTGCTGGCGTCATACTTCCCCCAGGATACCCAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1025:12201..17041-

>mRNA_S-firma_F_contig1025.382.1 ID=mRNA_S-firma_F_contig1025.382.1|Name=mRNA_S-firma_F_contig1025.382.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1374bp|location=Sequence derived from alignment at S-firma_F_contig1025:12201..17041- (Sphaerotrichia firma ET2_F female)
ATGTACACGACCAAGAGATGTACACGACCAAGAGGCTGAACAAGAACATG
ATGGACGGCGGGTCGTCCTACATCAGCATCGGTGATATGTACAAGGGAAA
CAAAATCATTCTTCCAGACCGATGGAAGGGCAAGGGTTTTTCGGCTGAAC
AAGAACATGATGGACGGCGGGTCGTCCTACATCAGCATCGGTGATATGTA
CAAGGGAAACAAAATCATTCTTCCAGACCGATGGAAGGGCAAGGGTTTTT
CGGTGCCCATGATCCCCAAGAACGCCGAGAACGGTAATTTCAGCCGGCTG
GAGTACAAGAGCGAGCCGTACGCAGACATGGAGAAGTTCTCCAAGACCCA
GCCTCTCGACAAGAGGAAGCTCGGCTTCGGGTGCCCATGATCCCCAAGAA
CGCCGAGAACGGTAATTTCAGCCGGCTGGAGTACAAGAGCGAGCCGTACG
CAGACATGGAGAAGTTCTCCAAGACCCAGCCTCTCGACAAGAGGAAGCTC
GGCTTCGGAACCAAAGACGCCTTCCGGCCTGGCGAGTTCACGGCGACGAT
TCGGACGGAGCAATATCGCGACCTGCTGCGCGCGGAGAAGACCATCATGG
AGAAGCACCGCGATCCAGACAAGGACCAGGCTTCCGCCCAGAACCAAAGA
CGCCTTCCGGCCTGGCGAGTTCACGGCGACGATTCGGACGGAGCAATATC
GCGACCTGCTGCGCGCGGAGAAGACCATCATGGAGAAGCACCGCGATCCA
GACAAGGACCAGGCTTCCGCCCAGAGGTACGAAAAGGACTTTGCGGAGCA
GCGCACGTTTCCCGAGGGGTTGAAGGAGATCGAGCACCTGTACGACGTCG
GCCGGGGGCAGAGGTACGAAAAGGACTTTGCGGAGCAGCGCACGTTTCCC
GAGGGGTTGAAGGAGATCGAGCACCTGTACGACGTCGGCCGGGGGCAGGT
GACCGAGTTCGACCCGAAGAACTCTCGGGACAGGTTCTACACGCTGTCCA
TCGACCAGGAAAAACGGCGGGGACCCTACCGCACGATGGCTCAGGTGACC
GAGTTCGACCCGAAGAACTCTCGGGACAGGTTCTACACGCTGTCCATCGA
CCAGGAAAAACGGCGGGGACCCTACCGCACGATGGCTCAGGATATCGGGG
ACGGTGCGTGGGGCCACAAGTACCAGTCGCCGGAGCACGGGCCCATACAC
CACGTCAAGTTCTTCTACGACAAGAGCCACCTTTCCCTGCCGCAGAGCGA
CACGTAGGATATCGGGGACGGTGCGTGGGGCCACAAGTACCAGTCGCCGG
AGCACGGGCCCATACACCACGTCAAGTTCTTCTACGACAAGAGCCACCTT
TCCCTGCCGCAGAGCGACACGTAG
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