mRNA_S-firma_F_contig1025.381.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1025.381.1
Unique NamemRNA_S-firma_F_contig1025.381.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: D7G5S7_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S7_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 5.830e-160
Identity = 332/640 (51.88%), Postives = 405/640 (63.28%), Query Frame = 1
Query:    1 MGCVSSKVGQRPPEHKPGHKAREDGRRGESRAVESRPAQPVVDS-DGERKAPASQSRDKRKGGPKEQARHGEGARRMAGGEEEREGETVTDATGLQMRTPRTSTDRGLHYAAKNGDLPLVHKLLGNSTTGHGQGRT---------QRKPSPRTATSTPVAADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEVDRRVSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAETSLALLDVAREARCARQLAGGASTTTG---PSRLTPLHAACDNGMHTVVKALLAAGAQVESRDGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRRIERSDGEEILRLVEAAIAGIERRQDR---DRAQPALRSRDSQV------GCHC-----QRDADEAGDDXXXXXXXXXEEDVLLVSDWDADVVGGGVHELELDDCDVLDG-------------PVPGPAYRDHGHHHLXXXXXXXXXDVLLVGDYDADMEEDAILMADMPCPGSRSRRDS--GSRE 1794
            MGCVSSKVGQRPP+   GH+A +     E    ESRPA PVV      R A +  + ++   G  E  R GE  R   GGE E EGET+TD +GLQMRTPRT  D GL+ AAKNGDLPLV  +L +S TG G             Q +P P  A  +   AD+DERGMWGNTPL+VATQYA+P +ALALIA GAN  LENERQATALHFSCAEG + V  ALL +GANVDP VA VHHP VNGGQT+P+TPLSAA++GG+TELVRLLV+ G +++RRV+P  +DG++RR+SF GTDG+GGSALTAAARYGHTETCFLLVDSGA++LL+DW++RTPLLHAILGGH +T++ALLD AR   C  QL G  S  TG    S L PLHAACD G+  VV+AL+AAGA+VE +D AGA     XXXXXXXXXXXXXXXXXX               A+ R ++  GEEIL L+EAA+A  E R  R   D ++ AL ++ + V      GC       QR+ ++  +D         EEDV LVSDWD D  G  + +   D+C+V +              P P     D               DVLLVGDYD+ +EE+  L     CP +  R D+  G+RE
Sbjct:    1 MGCVSSKVGQRPPDQVAGHEANKSAGGQEEAREESRPALPVVGQIQPARPAQSKNTENRNVQGKAEHHRSGENPR-AKGGEWEEEGETITDVSGLQMRTPRTCADPGLYAAAKNGDLPLVQMIL-SSNTGRGAAAVDAGDDGTMYQDRPEPDGAVPSSKVADLDERGMWGNTPLIVATQYAHPDIALALIAGGANVTLENERQATALHFSCAEGSVGVVSALLNNGANVDPSVATVHHPGVNGGQTIPLTPLSAAATGGYTELVRLLVQHGVDINRRVAPVGSDGKERRSSFLGTDGIGGSALTAAARYGHTETCFLLVDSGANLLLEDWNSRTPLLHAILGGHEQTAMALLDGARSVGCVSQLVGACSPETGGATSSGLAPLHAACDKGLQDVVRALVAAGAKVEEKDVAGASALLHXXXXXXXXXXXXXXXXXXDPMAADSEGDTPVSVARSRRDQPGGEEILSLLEAAVADDEHRDGRLGSDGSRRALGAKINDVNNGEDEGCDVLTDGSQREKEDGNED---------EEDVFLVSDWDPD--GEDIFD---DNCNVAERCGQSRQSENVENLPEPAAVNADENDDE---------DDVLLVGDYDSQLEEEEFLDV---CPAADEREDATVGTRE 612          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: A0A6H5JYM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM2_9PHAE)

HSP 1 Score: 436 bits (1122), Expect = 3.250e-141
Identity = 248/413 (60.05%), Postives = 297/413 (71.91%), Query Frame = 1
Query:    1 MGCVSSKVGQRPPEHKPGHKARED-GRRGESRAVESRPAQPVVDSDGERKAPASQSRDKRKGGPKEQARHGEGARRMAGGEEEREGETVTDATGLQMRTPRTSTDRGLHYAAKNGDLPLVHKLLGNSTTGHGQGRT---------QRKPSPRTATSTPVAADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEVDRRVSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAETSLALLDVAREARCARQLAGGASTTTG---PSRLTPLHAACDNGMHTVVKALLAAGAQVESRDGAGA 1200
            MGCVSSKVGQ PP+   GH+A+E  G +GE+R  ESRPA PV       +   S++ +KR    K +     G  R  GGE E EGET+TD +GLQMRTPRT  D GL+ AAKNGDLPLV  +L +S TG G             Q +P P         AD+DERGMWGNTPL+VATQYA+P +ALALIA GAN  LENERQATALHFSCAEG + V  ALL  GANVDP VA VHHP VNGGQT+P+TPLSAA++GG+TELVRLLV+ G +++RRV+P   DG++RR+SF GTDG+GGSALTAAARYGHTETC LLVDSGA++LL+DW++RTPLLHAILGGH +T++ALLD AR   C  QL G  S  TG    S L PL AACD G+  +V+AL+AAGA+VE +D  GA
Sbjct:    1 MGCVSSKVGQTPPDQVAGHEAKESAGGQGEARE-ESRPALPVGGHIQPARPAQSKNAEKRNVQGKAEHHRSGGNPRAKGGEWEEEGETITDLSGLQMRTPRTCADPGLYAAAKNGDLPLVQMIL-SSNTGRGAAAVDAGDDGTMYQDRPEPDGPAPGSKVADLDERGMWGNTPLIVATQYAHPDIALALIAGGANVTLENERQATALHFSCAEGSVGVASALLNSGANVDPSVATVHHPGVNGGQTIPLTPLSAAATGGYTELVRLLVQHGVDINRRVAPVGGDGKERRSSFLGTDGIGGSALTAAARYGHTETCLLLVDSGANLLLEDWNSRTPLLHAILGGHEQTAMALLDRARSVGCVSQLVGACSPETGGATSSGLAPLRAACDKGLQDLVRALVAAGAKVEEKDVTGA 411          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: A0A836CL65_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL65_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.870e-12
Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  466 RGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLD--VGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEVDRRVSPKRADGQDRRTSFSGTDGVGG-SALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAETSLAL 1023
            R   GNTPL++A Q  + +VA  L  AGA+  L N   A AL ++C  G     +   +L  GA  DPP A V  P++   Q +  TPL AA+  G     ++LV+ GA +DR    + A+   +          GG ++L  A   GH E    LV   ASVL++D D R+ L+HA +  H +   AL
Sbjct:   50 RDAHGNTPLMLALQQEHIEVAFVLAHAGADLTLVNSDGAGALLWACLVGASAPVLAGMMLRKGAPADPPAAEVEVPSLGIRQRL--TPLLAATICGCKVTCQVLVKYGANIDRATFVQPAEQCKKGEPAPPLYERGGITSLMMACLMGHGELAAALVAMDASVLVEDADGRSALMHACINRHEDVRTAL 236          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: A0A3Q0JDM6_DIACI (ankyrin repeat and KH domain-containing protein 1 n=2 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0JDM6_DIACI)

HSP 1 Score: 77.4 bits (189), Expect = 6.160e-11
Identity = 82/258 (31.78%), Postives = 110/258 (42.64%), Query Frame = 1
Query:  460 DERGMWGN-TPLLVATQYAYP---QVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEVDRRVSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGA-----------SVLLQD--WDARTPLLHAILGGHAETSLALLDVAREARCARQLAGGASTTTGPSRLTPLHAACDNGMHTVVKALLAAGAQVES 1182
            ++RG+ G  TPL+ A         Q ++ LI          E Q TAL  +C  G LDV   LL++GAN++   +               TPL  A+  GH ELVR L++ GA+V  +                     G +ALT A   GHT+   LL+  GA           SVL +D   D  T L+ A  GGHA     LLD  R           A T TG + LT    AC+NG   V   LL+ GA +++
Sbjct:  422 EDRGIKGECTPLMEAASSGNVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---------------TPLMEAAQEGHLELVRYLLDSGAQVHAKTQ------------------TGDTALTYACENGHTDVADLLLSYGANLVSNKQINISSVLSKDNLTDNSTMLIEAAKGGHANVVQLLLDFPRSVVPRFIHLVHAKTQTGDTALTY---ACENGHTDVADLLLSYGANLDN 643          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: A0A0P1B766_PLAHL (Ankyrin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B766_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 7.560e-11
Identity = 58/193 (30.05%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  268 DATGLQMRTPRTSTDRGLHY--AAKNGDLPLVHKLLGN------STTGHGQGRTQRKPSPRTATSTPVAADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEH------GANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEVDRRV 804
            ++T L++    +  D G+ +  A K GD+ ++  LL        S+T   + + + K          +   V+ RGMW +TPL+ A QYA+ + AL L+  GAN    NE+  TAL  +  EGL  +   L+E+        ++D  +  V++   +    + ++PL AAS  GH ++VRLL++ GA+V+++V
Sbjct:   48 NSTTLEIEASFSHADLGVQFLKAVKRGDVAIMETLLLQYQVQEPSSTEFFENKIEGKG---------IETLVNIRGMWESTPLISAAQYAHCEAALWLLNHGANPHSSNEKNVTALLLASLEGLTPLVVKLVENIDSKSSTQSIDQQIGAVYNAVFD--VNLRLSPLLAASMNGHEDIVRLLLDNGADVNQQV 229          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: A0A8K1CNB4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNB4_PYTOL)

HSP 1 Score: 73.9 bits (180), Expect = 6.370e-10
Identity = 72/248 (29.03%), Postives = 113/248 (45.56%), Query Frame = 1
Query:  445 VAADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEVDRRVSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAETSLALLDVAREARCARQLAGGASTTTGPSRLTPLHAACDNGMHTVVKALLAAGAQVESRD 1188
            + +D++ R   G T ++VA +  +  +   L+A GA+T    E   TAL+ +   G + + + L++ GA VD  V               VTPL AA+   H ++V LL++RGA +DR+ S  +                  +AL  A    +     +LV  GASV+++D    TPL+ AI         A+LD  +       +A    T T    +TPL AA + G H ++  LL  GA +E  D
Sbjct:   28 LISDLNCRNFDGWTAMMVAARQGHEDIVAFLLACGADTEAHKEGP-TALYLAATRGYVSIIKRLVDAGATVDTTVTEKQ-----------VTPLLAATMFRHADVVELLLDRGAVLDRQNSDLQ------------------TALHWAVDETNVAMIQVLVRRGASVVVRDTYRNTPLMVAIKHNDIVALTAILDTLKLHGEDSAIAAVLKTPTFDG-MTPLMAAANEGYHEILGQLLKYGAVLEDMD 244          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: UPI00201EC82C (uncharacterized protein LOC124152553 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EC82C)

HSP 1 Score: 69.3 bits (168), Expect = 1.920e-8
Identity = 77/271 (28.41%), Postives = 111/271 (40.96%), Query Frame = 1
Query:  451 ADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEV----DRR------------VSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLH-AILGGHAE-----TSLALLDVAREARCARQLAGGASTTTGPSRLTPLHAACDNGMHTVVKALLAAGAQVESRDGAG 1197
            AD++ RG +G TPL+VA +  + QV   L+  GA+  L ++ +   LH +C  G +DV + +L                 +N  +    TPL  A+  GH ++  LLV +GA+V    D R            V   +     +    +     G + L  AA  GH +   LLV  GA V L D   R  +LH A LGGH +      S  + D+    +C R               TPL  A +NG   V   L+   A V   D  G
Sbjct: 1596 ADINSRGRYGRTPLMVAAENGHRQVFDLLVREGADVTLVDDGRNNILHVACLGGHVDVVKYVLSQKVT-----------DINSRRQYGRTPLMVAAVKGHRQVFDLLVTQGADVTLVDDGRNNILHVACLGGHVDMVKYVLSQKIVDINSRGKHGRTPLMVAAENGHRQVFDLLVTRGAGVSLVD-QLRNNILHVACLGGHVDMAKYIVSQKVTDINSREQCGR---------------TPLMVAAENGHRQVFDLLVTESADVTLVDDDG 1839          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: UPI00201F6EA8 (ankyrin repeat domain-containing protein 50-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F6EA8)

HSP 1 Score: 67.8 bits (164), Expect = 3.260e-8
Identity = 63/209 (30.14%), Postives = 92/209 (44.02%), Query Frame = 1
Query:  451 ADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEV-----DRR------------------VSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAE 1008
            +D++ RG +G TPL+VA +  + QV   L+  GA+  L ++     LH +C  G +D+ + +L         VA ++     G      TPL  A+  GH ++  LLV  GA+V     DR+                  +S K AD        +G    G + +  AA  GH + C LLV  GA V L   D    L  A LGGH +
Sbjct:   54 SDMNGRGQYGRTPLMVAAEKGHRQVFDLLVREGADVSLVDDDGNNILHMACIGGHVDMVKYVLSQR------VADINSRGQYGR-----TPLMVAAEKGHRQVFDLLVRGGADVSLVGVDRKNILHVACLGGHVDMVKYVLSQKVAD-------MNGRGTYGRTPVMMAAEKGHRQVCDLLVREGADVSLVGVDRNNILHMACLGGHVD 244          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: UPI001EB08346 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB08346)

HSP 1 Score: 67.8 bits (164), Expect = 4.310e-8
Identity = 66/209 (31.58%), Postives = 95/209 (45.45%), Query Frame = 1
Query:  451 ADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEV----DRR-------------------VSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAE 1008
            AD++ RG +G TPL+VA +  Y QV   L+  GA+  L ++ +   LH +C  G + + + +L         VA ++     GG     TPL  A+  GH ++  LLV +GA V    D R                   +S K AD  +RR  +      G + L  AA  GH +   LLV  GA+V L D D  T L    LGG+ +
Sbjct:  522 ADINSRGKYGGTPLIVAAEMGYRQVFDLLVTQGADVSLVDDNRDNILHVACLGGHVGMVKYVLSLK------VADINSRGQYGG-----TPLIVAAEKGHRQVFDLLVTQGANVSLVDDNRNNILHVACLGGHVDMVKYVLSQKVAD-INRRGQY------GWTPLMVAAEKGHRQVFDLLVTQGANVSLVDDDGDTILHVVCLGGNVD 712          
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Match: UPI00201E7565 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201E7565)

HSP 1 Score: 67.8 bits (164), Expect = 5.190e-8
Identity = 63/209 (30.14%), Postives = 92/209 (44.02%), Query Frame = 1
Query:  451 ADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFSCAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGHTELVRLLVERGAEV-----DRR------------------VSPKRADGQDRRTSFSGTDGVGGSALTAAARYGHTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAE 1008
            +D++ RG +G TPL+VA +  + QV   L+  GA+  L ++     LH +C  G +D+ + +L         VA ++     G      TPL  A+  GH ++  LLV  GA+V     DR+                  +S K AD        +G    G + +  AA  GH + C LLV  GA V L   D    L  A LGGH +
Sbjct:  736 SDMNGRGQYGRTPLMVAAEKGHRQVFDLLVREGADVSLVDDDGNNILHMACIGGHVDMVKYVLSQR------VADINSRGQYGR-----TPLMVAAEKGHRQVFDLLVRGGADVSLVGVDRKNILHVACLGGHVDMVKYVLSQKVAD-------MNGRGTYGRTPVMMAAEKGHRQVCDLLVREGADVSLVGVDRNNILHMACLGGHVD 926          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1025.381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5S7_ECTSI5.830e-16051.88Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JYM2_9PHAE3.250e-14160.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CL65_9STRA6.870e-1234.92Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A3Q0JDM6_DIACI6.160e-1131.78ankyrin repeat and KH domain-containing protein 1 ... [more]
A0A0P1B766_PLAHL7.560e-1130.05Ankyrin n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
A0A8K1CNB4_PYTOL6.370e-1029.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI00201EC82C1.920e-828.41uncharacterized protein LOC124152553 n=1 Tax=Halio... [more]
UPI00201F6EA83.260e-830.14ankyrin repeat domain-containing protein 50-like i... [more]
UPI001EB083464.310e-831.58serine/threonine-protein phosphatase 6 regulatory ... [more]
UPI00201E75655.190e-830.14serine/threonine-protein phosphatase 6 regulatory ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1025contigS-firma_F_contig1025:4900..8556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G5S7
PFAMsAnk_2,Ank_4,KH_1
Max annot lvl2759|Eukaryota
KEGG koko:K16726
Evalue9.55e-161
EggNOG OGsKOG4369@1|root,KOG4369@2759|Eukaryota
Descriptionpositive regulation of MDA-5 signaling pathway
COG categoryS
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_008950.1
Exons6
Model size1821
Cds size1821
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1025.381.1prot_S-firma_F_contig1025.381.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1025 4900..8556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.9432333-CDS-S-firma_F_contig1025:4899..58531622815554.9432333-CDS-S-firma_F_contig1025:4899..5853Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 4900..5853 +
1696949412.2003477-CDS-S-firma_F_contig1025:4899..58531696949412.2003477-CDS-S-firma_F_contig1025:4899..5853Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 4900..5853 +
1622815554.9586573-CDS-S-firma_F_contig1025:6286..65591622815554.9586573-CDS-S-firma_F_contig1025:6286..6559Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 6287..6559 +
1696949412.2154796-CDS-S-firma_F_contig1025:6286..65591696949412.2154796-CDS-S-firma_F_contig1025:6286..6559Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 6287..6559 +
1622815554.9701622-CDS-S-firma_F_contig1025:7089..71881622815554.9701622-CDS-S-firma_F_contig1025:7089..7188Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 7090..7188 +
1696949412.2274892-CDS-S-firma_F_contig1025:7089..71881696949412.2274892-CDS-S-firma_F_contig1025:7089..7188Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 7090..7188 +
1622815554.981064-CDS-S-firma_F_contig1025:7660..77951622815554.981064-CDS-S-firma_F_contig1025:7660..7795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 7661..7795 +
1696949412.2378235-CDS-S-firma_F_contig1025:7660..77951696949412.2378235-CDS-S-firma_F_contig1025:7660..7795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 7661..7795 +
1622815554.9921515-CDS-S-firma_F_contig1025:8109..83101622815554.9921515-CDS-S-firma_F_contig1025:8109..8310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 8110..8310 +
1696949412.2469096-CDS-S-firma_F_contig1025:8109..83101696949412.2469096-CDS-S-firma_F_contig1025:8109..8310Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 8110..8310 +
1622815555.0039775-CDS-S-firma_F_contig1025:8397..85561622815555.0039775-CDS-S-firma_F_contig1025:8397..8556Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 8398..8556 +
1696949412.259465-CDS-S-firma_F_contig1025:8397..85561696949412.259465-CDS-S-firma_F_contig1025:8397..8556Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1025 8398..8556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1025.381.1

>prot_S-firma_F_contig1025.381.1 ID=prot_S-firma_F_contig1025.381.1|Name=mRNA_S-firma_F_contig1025.381.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=607bp
MGCVSSKVGQRPPEHKPGHKAREDGRRGESRAVESRPAQPVVDSDGERKA
PASQSRDKRKGGPKEQARHGEGARRMAGGEEEREGETVTDATGLQMRTPR
TSTDRGLHYAAKNGDLPLVHKLLGNSTTGHGQGRTQRKPSPRTATSTPVA
ADVDERGMWGNTPLLVATQYAYPQVALALIAAGANTRLENERQATALHFS
CAEGLLDVGRALLEHGANVDPPVAPVHHPAVNGGQTVPVTPLSAASSGGH
TELVRLLVERGAEVDRRVSPKRADGQDRRTSFSGTDGVGGSALTAAARYG
HTETCFLLVDSGASVLLQDWDARTPLLHAILGGHAETSLALLDVAREARC
ARQLAGGASTTTGPSRLTPLHAACDNGMHTVVKALLAAGAQVESRDGAGA
TPLLCACRKGRLQCVRELLSGGADPAAKDDAGSTPLSAAQRRIERSDGEE
ILRLVEAAIAGIERRQDRDRAQPALRSRDSQVGCHCQRDADEAGDDDNDD
NDDGEEEDVLLVSDWDADVVGGGVHELELDDCDVLDGPVPGPAYRDHGHH
HLNAEEEEEEEDVLLVGDYDADMEEDAILMADMPCPGSRSRRDSGSREVR
RSLACW*
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mRNA from alignment at S-firma_F_contig1025:4900..8556+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1025.381.1 ID=mRNA_S-firma_F_contig1025.381.1|Name=mRNA_S-firma_F_contig1025.381.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3657bp|location=Sequence derived from alignment at S-firma_F_contig1025:4900..8556+ (Sphaerotrichia firma ET2_F female)
ATGGGGTGTGTCTCTTCCAAAGTTGGGCAGAGACCGCCGGAGCACAAACC GGGACACAAGGCGCGCGAAGATGGCAGGAGGGGGGAAAGTCGAGCGGTGG AGTCCCGGCCTGCGCAGCCTGTGGTTGACTCAGACGGAGAACGCAAAGCT CCTGCGAGCCAGTCAAGGGACAAACGCAAAGGTGGGCCAAAGGAGCAAGC ACGGCACGGCGAAGGAGCAAGGCGGATGGCAGGTGGTGAAGAGGAGAGGG AGGGAGAGACCGTCACAGACGCGACTGGGCTGCAGATGCGCACACCACGT ACAAGCACGGATCGCGGCCTGCACTACGCCGCAAAAAACGGGGACTTACC TCTCGTACACAAGCTTCTCGGCAACAGCACCACCGGCCACGGTCAAGGCC GAACACAGAGGAAACCCAGCCCTCGAACCGCGACAAGCACGCCGGTGGCG GCCGACGTCGACGAGCGTGGAATGTGGGGAAACACGCCTCTTCTCGTAGC GACGCAGTACGCCTACCCACAGGTTGCCTTGGCGCTAATCGCCGCAGGAG CCAACACGCGCTTAGAGAACGAGCGGCAGGCAACCGCTCTCCACTTCAGC TGCGCCGAAGGGCTGCTCGACGTCGGTCGAGCGCTGCTGGAGCACGGGGC AAACGTAGACCCTCCGGTCGCGCCCGTCCACCACCCCGCCGTAAACGGAG GTCAAACCGTACCAGTCACGCCGCTGTCGGCCGCTTCAAGCGGAGGGCAC ACGGAGCTTGTGCGGTTGTTGGTGGAGCGCGGGGCAGAGGTCGATCGGCG GGTGTCGCCTAAGCGGGCGGACGGACAGGATAGGCGGACTAGTTTTTCGG GGACGGATGGGGTCGGCGGCTCGGCGTTGACGGCGGCGGCGCGGTATGGA CACACGGAGACTTGCTTTCTGCTCGTTGACAGCGGAGCGAGCGTGCTGCT TCAGGTAACAAGCAAGGATATTTTGCAGAAACAGCCAACGCCCCTTTTGC AAACACCCTCTGGCTAGGTTCGACGTTCGACCCGGGAGACTGTTGCGTGC CATGTTGGCATTATCCGTACGTGTTTTCCACTGCCGACCTTATCTGCTTT GGGCCCAACTTCGGGCATAGTCGGTAAGTACCTCCCACTAGTGAACGCTC CACGCGGTGTGCTGGCTACGGTGGAAACCATGAGCCCGAATCTGCATGGG CAGTCCCTCGGCGAACAGCAGCACGAGAGATGCGTGCATCATCTCGACAT ACATGCATGCAGCTGCGCCGAGCCGAGCGCGCACACCATCCAGGCGAACG GTTTGGAATCGCGACTGACTGCTCAAAGAGCCGAACGAACCAACACACAC ATCCCCGTCCACTGCGCGTGCGACTCGGTTGTTTCAGGACTGGGATGCGC GAACACCGCTTCTGCACGCGATCCTCGGCGGTCACGCGGAGACCTCGTTG GCGTTGCTCGATGTCGCGCGGGAGGCCCGTTGCGCGCGTCAGCTAGCGGG GGGGGCATCGACCACCACGGGCCCCTCAAGATTAACCCCACTGCACGCTG CTTGCGACAACGGGATGCACACAGTGGTGAAGGCGCTGCTCGCAGCCGGG GCGCAGGTTGAGTCGAGAGACGGCGCTGGAGCTACCCCTCTTCTGTGCGC TTGTCGGAAGGTAAGAGCTAAGAGCTGTACCATTCCATCCGGTTTTGGCG CTGCCACTCGCACGTGGACTGTGTGGGGTTCGGTACGGCCCCAGCTAGCC ATGGAGACCTAGGTTCTGGCTAGCGTTCTGGCTAGCACGTGCGAGTGAAG CAAATTATGAGATGGCGTGCGACCGTCCGACGGCGGCGTCGCTACCGTCA GCGAAGGCAACGTGCCCCATCGACCCACAAATCGTAGAACTGACATGCGC GATGACGATATACGATAACTCCACTACGACGGCACCTTTCATTGGTCGGG CTTCCGGCAAAAGACTCGAGTTCTTGAGCAATGCAGTCAGCTTGGTTGAC GCCCGCGATTCCGTCGTCATGGTAGAGTCGCCGTCAGACCCAAAGGTCCC CCGCCATGCCTAAATAGCGCACAACTCACTGTTAGCTGTCGCCGCAAAGC CAAAAGGTCGACCGTCATGCCAACATAGGTCGCAACTCACTGTTATAGGT TGTCTCGCCCCTCTTGCCGCGTTTGTTTCTCCACAAAAAGGGGCGGCTGC AGTGCGTGCGGGAGTTGTTGTCCGGAGGGGCTGATCCAGCGGCTAAAGAC GATGCAGGGAGCACGCCGCTTTCGGCCGCGCAACGCCGAGTGAGTTTGTT TGTGTTTCGTCGAAGGGCCTCAAGTCTTGACGCGTGCTGTCAAAGCCAAC TCGTGCTACATACGATCTCCGCTCATATCATAGTCGATAACCGCTTCTAA ACGCCACGGTACGGGCGAAACCTTGGTGCCCTCGTCCGCTTGATCGGTTC GTCGCGCCGAAAGCGGCGTGCGTAGCTTAGCCAATCGACTATCGCCAACC GATCCCTGTAGCTTAAATTTAGCCTTCGAGGGAAAAATGACCGGAATTGT CGTTAGGCTTCCCCTCAAGTTGATTGAGCGGCGTGGTCAGTGGGCCGAGC CGATGTTTGGGTGCATGTGCCGTAGGTTTGCCGATTTCTCATCGAACGTG GCGCGTCCGAGATACCTACCGCACACCACCACGGCTTGTTCCATTACTCA AGTGAAGCGTCCTCACTTCAGAGTGCGCGCTCCACCTTGAAAAACCGCCC CCCCCCCCCAGATCGAACGCTCGGATGGGGAAGAGATTTTGCGGCTAGTC GAGGCGGCGATCGCCGGTATCGAACGTCGACAAGACCGAGATAGAGCACA GCCAGCGCTTCGTTCACGAGACTCTCAGGTAGGTTGCCATTGCCAAGTTC GTCGACAATAGCTTACACTATCGGATACGAAGCGTCATACTTTCACAGGA AACACTAAAAGACACGGCCGAGATTACACACACCAAAGCAGAAGTCGCAG CCAAGCCGAAACAAATTGCTTCGCGTCCCCTCCCTCCGAGCCCGCCAAAT CGCTAAATCGCTCAGCGTCGGTGTTTTCGGCCCCACCGAAACGGAGACAG TTCTGTTAGTTGCCGGTGCGACATATGTAGACGCAGCAATCAGTCATCCC GCAGCCGTCCTTTTCTTCCTTCGCTCCTCGATCCCTCCGCCCACGACCGC CACCAAGCAGCGCGACGCCGACGAAGCGGGAGACGACGACAACGACGACA ACGACGACGGCGAGGAAGAAGACGTGCTGCTGGTATCCGACTGGGACGCC GATGTGGTCGGCGGGGGTGTCCACGAGCTGGAGCTGGACGACTGCGACGT CCTCGACGGCCCCGTCCCCGGCCCCGCCTACCGCGATCACGGCCACCACC ACCTCAACGCCGTCGCCGCCGGCCGGGAACCCGGCCGACACACAGCAGAA GGGCGGCCCACCAAACACAACGACGACGGTCGCGACAACGAGACCGAGGA GGAGGAGGAGGAGGAGGAGGACGTGCTGCTTGTCGGGGACTACGACGCCG ACATGGAGGAGGACGCGATTCTGATGGCCGATATGCCGTGTCCGGGATCA CGGTCACGGAGGGATTCGGGGTCACGGGAGGTGAGGCGCTCTCTCGCGTG TTGGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1025:4900..8556+

>mRNA_S-firma_F_contig1025.381.1 ID=mRNA_S-firma_F_contig1025.381.1|Name=mRNA_S-firma_F_contig1025.381.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3642bp|location=Sequence derived from alignment at S-firma_F_contig1025:4900..8556+ (Sphaerotrichia firma ET2_F female)
ATGGGGTGTGTCTCTTCCAAAGTTGGGCAGAGACCGCCGGAGCACAAACC
GGGACACAAGGCGCGCGAAGATGGCAGGAGGGGGGAAAGTCGAGCGGTGG
AGTCCCGGCCTGCGCAGCCTGTGGTTGACTCAGACGGAGAACGCAAAGCT
CCTGCGAGCCAGTCAAGGGACAAACGCAAAGGTGGGCCAAAGGAGCAAGC
ACGGCACGGCGAAGGAGCAAGGCGGATGGCAGGTGGTGAAGAGGAGAGGG
AGGGAGAGACCGTCACAGACGCGACTGGGCTGCAGATGCGCACACCACGT
ACAAGCACGGATCGCGGCCTGCACTACGCCGCAAAAAACGGGGACTTACC
TCTCGTACACAAGCTTCTCGGCAACAGCACCACCGGCCACGGTCAAGGCC
GAACACAGAGGAAACCCAGCCCTCGAACCGCGACAAGCACGCCGGTGGCG
GCCGACGTCGACGAGCGTGGAATGTGGGGAAACACGCCTCTTCTCGTAGC
GACGCAGTACGCCTACCCACAGGTTGCCTTGGCGCTAATCGCCGCAGGAG
CCAACACGCGCTTAGAGAACGAGCGGCAGGCAACCGCTCTCCACTTCAGC
TGCGCCGAAGGGCTGCTCGACGTCGGTCGAGCGCTGCTGGAGCACGGGGC
AAACGTAGACCCTCCGGTCGCGCCCGTCCACCACCCCGCCGTAAACGGAG
GTCAAACCGTACCAGTCACGCCGCTGTCGGCCGCTTCAAGCGGAGGGCAC
ACGGAGCTTGTGCGGTTGTTGGTGGAGCGCGGGGCAGAGGTCGATCGGCG
GGTGTCGCCTAAGCGGGCGGACGGACAGGATAGGCGGACTAGTTTTTCGG
GGACGGATGGGGTCGGCGGCTCGGCGTTGACGGCGGCGGCGCGGTATGGA
CACACGGAGACTTGCTTTCTGCTCGTTGACAGCGGAGCGAGCGTGCTGCT
TCAGATGGGGTGTGTCTCTTCCAAAGTTGGGCAGAGACCGCCGGAGCACA
AACCGGGACACAAGGCGCGCGAAGATGGCAGGAGGGGGGAAAGTCGAGCG
GTGGAGTCCCGGCCTGCGCAGCCTGTGGTTGACTCAGACGGAGAACGCAA
AGCTCCTGCGAGCCAGTCAAGGGACAAACGCAAAGGTGGGCCAAAGGAGC
AAGCACGGCACGGCGAAGGAGCAAGGCGGATGGCAGGTGGTGAAGAGGAG
AGGGAGGGAGAGACCGTCACAGACGCGACTGGGCTGCAGATGCGCACACC
ACGTACAAGCACGGATCGCGGCCTGCACTACGCCGCAAAAAACGGGGACT
TACCTCTCGTACACAAGCTTCTCGGCAACAGCACCACCGGCCACGGTCAA
GGCCGAACACAGAGGAAACCCAGCCCTCGAACCGCGACAAGCACGCCGGT
GGCGGCCGACGTCGACGAGCGTGGAATGTGGGGAAACACGCCTCTTCTCG
TAGCGACGCAGTACGCCTACCCACAGGTTGCCTTGGCGCTAATCGCCGCA
GGAGCCAACACGCGCTTAGAGAACGAGCGGCAGGCAACCGCTCTCCACTT
CAGCTGCGCCGAAGGGCTGCTCGACGTCGGTCGAGCGCTGCTGGAGCACG
GGGCAAACGTAGACCCTCCGGTCGCGCCCGTCCACCACCCCGCCGTAAAC
GGAGGTCAAACCGTACCAGTCACGCCGCTGTCGGCCGCTTCAAGCGGAGG
GCACACGGAGCTTGTGCGGTTGTTGGTGGAGCGCGGGGCAGAGGTCGATC
GGCGGGTGTCGCCTAAGCGGGCGGACGGACAGGATAGGCGGACTAGTTTT
TCGGGGACGGATGGGGTCGGCGGCTCGGCGTTGACGGCGGCGGCGCGGTA
TGGACACACGGAGACTTGCTTTCTGCTCGTTGACAGCGGAGCGAGCGTGC
TGCTTCAGGACTGGGATGCGCGAACACCGCTTCTGCACGCGATCCTCGGC
GGTCACGCGGAGACCTCGTTGGCGTTGCTCGATGTCGCGCGGGAGGCCCG
TTGCGCGCGTCAGCTAGCGGGGGGGGCATCGACCACCACGGGCCCCTCAA
GATTAACCCCACTGCACGCTGCTTGCGACAACGGGATGCACACAGTGGTG
AAGGCGCTGCTCGCAGCCGGGGCGCAGGTTGAGTCGAGAGACGGCGCTGG
AGCTACCCCTCTTCTGTGCGCTTGTCGGAAGGACTGGGATGCGCGAACAC
CGCTTCTGCACGCGATCCTCGGCGGTCACGCGGAGACCTCGTTGGCGTTG
CTCGATGTCGCGCGGGAGGCCCGTTGCGCGCGTCAGCTAGCGGGGGGGGC
ATCGACCACCACGGGCCCCTCAAGATTAACCCCACTGCACGCTGCTTGCG
ACAACGGGATGCACACAGTGGTGAAGGCGCTGCTCGCAGCCGGGGCGCAG
GTTGAGTCGAGAGACGGCGCTGGAGCTACCCCTCTTCTGTGCGCTTGTCG
GAAGGGGCGGCTGCAGTGCGTGCGGGAGTTGTTGTCCGGAGGGGCTGATC
CAGCGGCTAAAGACGATGCAGGGAGCACGCCGCTTTCGGCCGCGCAACGC
CGAGGGCGGCTGCAGTGCGTGCGGGAGTTGTTGTCCGGAGGGGCTGATCC
AGCGGCTAAAGACGATGCAGGGAGCACGCCGCTTTCGGCCGCGCAACGCC
GAATCGAACGCTCGGATGGGGAAGAGATTTTGCGGCTAGTCGAGGCGGCG
ATCGCCGGTATCGAACGTCGACAAGACCGAGATAGAGCACAGCCAGCGCT
TCGTTCACGAGACTCTCAGGTAGGTTGCCATTGCCAAATCGAACGCTCGG
ATGGGGAAGAGATTTTGCGGCTAGTCGAGGCGGCGATCGCCGGTATCGAA
CGTCGACAAGACCGAGATAGAGCACAGCCAGCGCTTCGTTCACGAGACTC
TCAGGTAGGTTGCCATTGCCAACGCGACGCCGACGAAGCGGGAGACGACG
ACAACGACGACAACGACGACGGCGAGGAAGAAGACGTGCTGCTGGTATCC
GACTGGGACGCCGATGTGGTCGGCGGGGGTGTCCACGAGCTGGAGCTGGA
CGACTGCGACGTCCTCGACGGCCCCGTCCCCGGCCCCGCCTACCGCGATC
ACGGCCACCACCACCTCAACGCCCGCGACGCCGACGAAGCGGGAGACGAC
GACAACGACGACAACGACGACGGCGAGGAAGAAGACGTGCTGCTGGTATC
CGACTGGGACGCCGATGTGGTCGGCGGGGGTGTCCACGAGCTGGAGCTGG
ACGACTGCGACGTCCTCGACGGCCCCGTCCCCGGCCCCGCCTACCGCGAT
CACGGCCACCACCACCTCAACGCCGAGGAGGAGGAGGAGGAGGAGGACGT
GCTGCTTGTCGGGGACTACGACGCCGACATGGAGGAGGACGCGATTCTGA
TGGCCGATATGCCGTGTCCGGGATCACGGTCACGGAGGGATTCGGGGTCA
CGGGAGGTGAGGCGCTCTCTCGCGTGTTGGTAGGAGGAGGAGGAGGAGGA
GGAGGACGTGCTGCTTGTCGGGGACTACGACGCCGACATGGAGGAGGACG
CGATTCTGATGGCCGATATGCCGTGTCCGGGATCACGGTCACGGAGGGAT
TCGGGGTCACGGGAGGTGAGGCGCTCTCTCGCGTGTTGGTAG
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