mRNA_S-firma_F_contig10247.379.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10247.379.1
Unique NamemRNA_S-firma_F_contig10247.379.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10247.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10247contigS-firma_F_contig10247:3538..4721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size352
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10247.379.1prot_S-firma_F_contig10247.379.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10247 3538..4705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.572956-CDS-S-firma_F_contig10247:3537..36231622815554.572956-CDS-S-firma_F_contig10247:3537..3623Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 3538..3623 -
1696949411.9399343-CDS-S-firma_F_contig10247:3537..36231696949411.9399343-CDS-S-firma_F_contig10247:3537..3623Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 3538..3623 -
1622815554.5825837-CDS-S-firma_F_contig10247:3837..39161622815554.5825837-CDS-S-firma_F_contig10247:3837..3916Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 3838..3916 -
1696949411.9537442-CDS-S-firma_F_contig10247:3837..39161696949411.9537442-CDS-S-firma_F_contig10247:3837..3916Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 3838..3916 -
1622815554.5920243-CDS-S-firma_F_contig10247:3926..39751622815554.5920243-CDS-S-firma_F_contig10247:3926..3975Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 3927..3975 -
1696949411.9798813-CDS-S-firma_F_contig10247:3926..39751696949411.9798813-CDS-S-firma_F_contig10247:3926..3975Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 3927..3975 -
1622815554.6034243-CDS-S-firma_F_contig10247:4583..47051622815554.6034243-CDS-S-firma_F_contig10247:4583..4705Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 4584..4705 -
1696949411.9946468-CDS-S-firma_F_contig10247:4583..47051696949411.9946468-CDS-S-firma_F_contig10247:4583..4705Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 4584..4705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.6143532-UTR-S-firma_F_contig10247:4705..47211622815554.6143532-UTR-S-firma_F_contig10247:4705..4721Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 4706..4721 -
1696949412.004434-UTR-S-firma_F_contig10247:4705..47211696949412.004434-UTR-S-firma_F_contig10247:4705..4721Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 4706..4721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10247.379.1

>prot_S-firma_F_contig10247.379.1 ID=prot_S-firma_F_contig10247.379.1|Name=mRNA_S-firma_F_contig10247.379.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
MVDCEHSDCQLVERPPVPGQAHKHYWKSKTGTKSPGFYIYGGTDSDGARH
SAGMGSTVATTEASSDCTSLEGGARKRKKSQGKVRQAGRRLNHSVSSPPV
RRHPGRPRRQG*
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mRNA from alignment at S-firma_F_contig10247:3538..4721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10247.379.1 ID=mRNA_S-firma_F_contig10247.379.1|Name=mRNA_S-firma_F_contig10247.379.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1184bp|location=Sequence derived from alignment at S-firma_F_contig10247:3538..4721- (Sphaerotrichia firma ET2_F female)
TTGCAGATAATTCAAGATGGTTGATTGCGAGCATAGCGACTGCCAGCTTG
TGGAGAGACCCCCGGTTCCTGGACAAGCGCACAAACACTACTGGAAGAGC
AAGACCGGAACGAAGTCCCCAGGTTTCTACATATATGGGTAAGATCATGT
GAACCTCTTTCTTGTTCATGCGAATGGTTTTGCTTCTTTTTTTTTTGCGA
GGTCCGTTTTTTTGTTTCAGGGTCCTTTTTCCCCCCCCCTCTTTTCTCTT
CAGCCTTTCTTTGTTCCTTCTTCAGCAACGAACGCCGACAATGTCTGATG
CACTGGCGCATGTATGATTAGAAGAGGTTTTGTTCGTTTGGCGATCGGAG
GGAGGCCTTTTTTTCTCGTTGTTGTGTTTCTTTGTGTTTTTTACTCCTAT
GTTTTTGTGTTTTTTTGTGCAGTTTGTTCGGCTCCTTCAGCAATGAACAA
CGCCAATGATGAATGTCCGGCATCAAAGACATGTGCCACAATATAGTCTG
TTCAGGTGTTCAGCCGTTTACAACAGTGTTAAAATATACCATTCGACTTG
CGTCGCCCCCGGGAGGCATGTGCCGAACTCCCGAAAGGGGAACCTTGCGT
GGTTGATTGTATATGTGCACACAGTAAAGTTGGTGTTGTCCGTTGTGGTA
TCTGAGAAGCAGGCGTAGATTGGACCACGGCATCACCTGAGCTCTTCTCT
GTTGAATGCTTTGCTGTTTTTCTGCCAACATCCACCACGTTTGCAGCGGC
ACGGACAGTGACGGCGCTCGTCATAGCGCGGGAATGGGTTCAACAGCAAG
CACAGGTCGCGACAACTGAGGCGTCGAGCGACTGCACGTCGTTGGAGGGC
GGGGCACGAAAACGGAAGAAGTCTCAGGGGAAAGGTCAGGTCAATGTAGA
GCGTCCATGCCCTATTGCCTATTGCACAGGGCTTGCATTGAAGGAAACTC
TGCCTTGTATTCCACGGGCTTCTTTCAACAACACGACACAAGCTTCTGTG
CGCGCACGCGTGCGTTCCCATCTTTTCCGAACCCTTTCCAAACCGCTCTC
CTTTTTCCCGACCATCCCACGTTCGTTTTTTTGTCTTGTCCATCATAGTC
CGTCAAGCAGGGCGACGGCTCAACCATTCCGTAAGCAGCCCTCCTGTCCG
CCGACATCCGGGACGACCTCGGCGCCAGGGATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10247:3538..4721-

>mRNA_S-firma_F_contig10247.379.1 ID=mRNA_S-firma_F_contig10247.379.1|Name=mRNA_S-firma_F_contig10247.379.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10247:3538..4721- (Sphaerotrichia firma ET2_F female)
ATGGTTGATTGCGAGCATAGCGACTGCCAGCTTGTGGAGAGACCCCCGGT
TCCTGGACAAGCGCACAAACACTACTGGAAGAGCAAGACCGGAACGAAGT
CCCCAGGTTTCTACATATATGGATGGTTGATTGCGAGCATAGCGACTGCC
AGCTTGTGGAGAGACCCCCGGTTCCTGGACAAGCGCACAAACACTACTGG
AAGAGCAAGACCGGAACGAAGTCCCCAGGTTTCTACATATATGGCGGCAC
GGACAGTGACGGCGCTCGTCATAGCGCGGGAATGGGTTCAACACGGCACG
GACAGTGACGGCGCTCGTCATAGCGCGGGAATGGGTTCAACAGTCGCGAC
AACTGAGGCGTCGAGCGACTGCACGTCGTTGGAGGGCGGGGCACGAAAAC
GGAAGAAGTCTCAGGGGAAAGGTCGCGACAACTGAGGCGTCGAGCGACTG
CACGTCGTTGGAGGGCGGGGCACGAAAACGGAAGAAGTCTCAGGGGAAAG
TCCGTCAAGCAGGGCGACGGCTCAACCATTCCGTAAGCAGCCCTCCTGTC
CGCCGACATCCGGGACGACCTCGGCGCCAGGGATGATCCGTCAAGCAGGG
CGACGGCTCAACCATTCCGTAAGCAGCCCTCCTGTCCGCCGACATCCGGG
ACGACCTCGGCGCCAGGGATGA
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