mRNA_S-firma_F_contig10247.378.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10247.378.1
Unique NamemRNA_S-firma_F_contig10247.378.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10247.378.1 vs. uniprot
Match: D7G1Q1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.710e-7
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 3 
Query:  609 GKPGDMVGCRVCPAAFHRRCLPACSDSLQAAMHHSPGDKWRCPRCVTRGQVNLV 770
            G+P D++ C  CP AFHRRCLPA +DS  AA   +  D W C  C   G+ +LV
Sbjct:  137 GRPEDLISCDGCPRAFHRRCLPAGTDSQLAATFRARVDAWFCSNCTKMGRTSLV 190
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BLAST of mRNA_S-firma_F_contig10247.378.1 vs. uniprot
Match: D7FS21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS21_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.020e-7
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 3 
Query:  609 GKPGDMVGCRVCPAAFHRRCLPACSDSLQAAMHHSPGDKWRCPRCVTRGQVNLV 770
            G+P D++ C  CP AFHRRCLPA +DS  AA   +  D W C  C   G+ +LV
Sbjct:  233 GRPEDLISCDGCPRAFHRRCLPAGTDSQLAATFRARVDAWFCSHCTKMGRTSLV 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10247.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Q1_ECTSI1.710e-748.15PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FS21_ECTSI3.020e-748.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10247contigS-firma_F_contig10247:2017..3321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size823
Cds size525
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10247.378.1prot_S-firma_F_contig10247.378.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10247 2797..3321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.6635149-UTR-S-firma_F_contig10247:2016..20621622815554.6635149-UTR-S-firma_F_contig10247:2016..2062Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 2017..2062 -
1696949412.0134144-UTR-S-firma_F_contig10247:2016..20621696949412.0134144-UTR-S-firma_F_contig10247:2016..2062Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 2017..2062 -
1622815554.6836824-UTR-S-firma_F_contig10247:2313..24881622815554.6836824-UTR-S-firma_F_contig10247:2313..2488Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 2314..2488 -
1696949412.0222266-UTR-S-firma_F_contig10247:2313..24881696949412.0222266-UTR-S-firma_F_contig10247:2313..2488Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 2314..2488 -
1622815554.6991081-UTR-S-firma_F_contig10247:2720..27961622815554.6991081-UTR-S-firma_F_contig10247:2720..2796Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 2721..2796 -
1696949412.0316825-UTR-S-firma_F_contig10247:2720..27961696949412.0316825-UTR-S-firma_F_contig10247:2720..2796Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10247 2721..2796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.7098603-CDS-S-firma_F_contig10247:2796..33211622815554.7098603-CDS-S-firma_F_contig10247:2796..3321Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 2797..3321 -
1696949412.0412505-CDS-S-firma_F_contig10247:2796..33211696949412.0412505-CDS-S-firma_F_contig10247:2796..3321Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10247 2797..3321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10247.378.1

>prot_S-firma_F_contig10247.378.1 ID=prot_S-firma_F_contig10247.378.1|Name=mRNA_S-firma_F_contig10247.378.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=175bp
DVQAAHSSARATLWHSETGSPVLGGGFGGLFAAFAAAAASAASLSASAAA
AALRSGRPACAAASATMAAVASFRASAASAADASGGGDSPVLLDPMPTPP
TYPSSGHAPREQGPILPSSSKGKVSIAPDARGGGGLGGGDGDHDRAAFSC
HTKTTMLRPGASGWERWDGAKPIG*
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mRNA from alignment at S-firma_F_contig10247:2017..3321-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10247.378.1 ID=mRNA_S-firma_F_contig10247.378.1|Name=mRNA_S-firma_F_contig10247.378.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1305bp|location=Sequence derived from alignment at S-firma_F_contig10247:2017..3321- (Sphaerotrichia firma ET2_F female)
GATGTCCAAGCAGCCCACTCGTCGGCCCGCGCCACCCTCTGGCACAGCGA
GACCGGTTCCCCGGTTCTCGGAGGAGGATTCGGAGGGTTGTTCGCTGCCT
TTGCTGCCGCGGCTGCTTCTGCTGCGTCACTCTCTGCCTCCGCCGCTGCC
GCTGCTTTACGCTCTGGTCGTCCTGCTTGTGCTGCCGCTTCGGCGACGAT
GGCGGCGGTTGCTTCGTTTCGCGCTTCAGCTGCCTCTGCTGCTGATGCTT
CTGGTGGCGGCGACAGCCCCGTCCTGCTTGACCCAATGCCGACCCCTCCG
ACGTACCCCTCTAGTGGCCACGCCCCCCGCGAGCAGGGTCCCATCTTGCC
TTCGTCATCGAAGGGCAAGGTTTCAATCGCCCCCGACGCCCGCGGAGGAG
GGGGTTTAGGTGGCGGCGACGGGGACCACGACCGGGCGGCGTTCTCCTGC
CACACGAAGACGACGATGCTCCGACCGGGCGCGAGCGGTTGGGAGCGGTG
GGACGGCGCGAAGCCAATCGGTTGAGCAGCACCGACGACGGGCCGTTCGC
GATGGGAGATGGAACCCTGATTGACACGAACGGGGACGTCCTGCGCTGCA
TGTGAGGACACAGTTGTTTTGGGGGGTTGTGCCACGCTTGACTGTGCAAC
TTTCCCTTTCCGTGCTGGCCTCTCACATGTGACAAACGCCTTCTGTGACG
ACGGGGAAACACGTAAGCTGTTCAGAACACATGCCTGGTGAAGAGGACGC
AGAGACAAAGCTCCTGAATGCGACGAACGAAAGACATAACACCCCGTCCC
TCCGGCCTTGTGCGTTTCTCTTACTGCTCGCAGCGGGTGCGGGAAGCCTG
GCGACATGGTCGGCTGCCGCGTATGCCCTGCGGCTTTTCACAGGCGGTGT
CTGCCTGCCTGCAGCGACAGCCTGCAGGCGGCGATGCACCACTCGCCGGG
TGATAAGTGGCGCTGCCCCCGGTGTGTCACGCGTGGGCAGGTCAACCTGG
TGAATGGGGTGAGAGCGTAAGAGACTTTCATGAAGGAAACCAGAACAGTC
ATGCGGTCGTGGTGTGTGTTTTCTCTTTTGTACCCAGAGTACATCTTGTT
CTTCCAGATCCTAGGCGATTCGCTCCTACCGCTCGGCAGCCACACCTTTG
TGCCTGACTCTCGCAACATCTTCTACACGTCGCGCGTAGCAATACTCCTC
GCTTTGCTGGTCCGCTCTCTTTGACGTCCCCGAAAAACGCACAACCGTTC
AACGATCAGGAGCTGTCGGCTTCTAGTATGGAGACAATGGAGCACACAGC
GAGAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10247:2017..3321-

>mRNA_S-firma_F_contig10247.378.1 ID=mRNA_S-firma_F_contig10247.378.1|Name=mRNA_S-firma_F_contig10247.378.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1050bp|location=Sequence derived from alignment at S-firma_F_contig10247:2017..3321- (Sphaerotrichia firma ET2_F female)
GATGTCCAAGCAGCCCACTCGTCGGCCCGCGCCACCCTCTGGCACAGCGA
GACCGGTTCCCCGGTTCTCGGAGGAGGATTCGGAGGGTTGTTCGCTGCCT
TTGCTGCCGCGGCTGCTTCTGCTGCGTCACTCTCTGCCTCCGCCGCTGCC
GCTGCTTTACGCTCTGGTCGTCCTGCTTGTGCTGCCGCTTCGGCGACGAT
GGCGGCGGTTGCTTCGTTTCGCGCTTCAGCTGCCTCTGCTGCTGATGCTT
CTGGTGGCGGCGACAGCCCCGTCCTGCTTGACCCAATGCCGACCCCTCCG
ACGTACCCCTCTAGTGGCCACGCCCCCCGCGAGCAGGGTCCCATCTTGCC
TTCGTCATCGAAGGGCAAGGTTTCAATCGCCCCCGACGCCCGCGGAGGAG
GGGGTTTAGGTGGCGGCGACGGGGACCACGACCGGGCGGCGTTCTCCTGC
CACACGAAGACGACGATGCTCCGACCGGGCGCGAGCGGTTGGGAGCGGTG
GGACGGCGCGAAGCCAATCGGTTGAGATGTCCAAGCAGCCCACTCGTCGG
CCCGCGCCACCCTCTGGCACAGCGAGACCGGTTCCCCGGTTCTCGGAGGA
GGATTCGGAGGGTTGTTCGCTGCCTTTGCTGCCGCGGCTGCTTCTGCTGC
GTCACTCTCTGCCTCCGCCGCTGCCGCTGCTTTACGCTCTGGTCGTCCTG
CTTGTGCTGCCGCTTCGGCGACGATGGCGGCGGTTGCTTCGTTTCGCGCT
TCAGCTGCCTCTGCTGCTGATGCTTCTGGTGGCGGCGACAGCCCCGTCCT
GCTTGACCCAATGCCGACCCCTCCGACGTACCCCTCTAGTGGCCACGCCC
CCCGCGAGCAGGGTCCCATCTTGCCTTCGTCATCGAAGGGCAAGGTTTCA
ATCGCCCCCGACGCCCGCGGAGGAGGGGGTTTAGGTGGCGGCGACGGGGA
CCACGACCGGGCGGCGTTCTCCTGCCACACGAAGACGACGATGCTCCGAC
CGGGCGCGAGCGGTTGGGAGCGGTGGGACGGCGCGAAGCCAATCGGTTGA
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