mRNA_S-firma_F_contig1020.316.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1020.316.1 vs. uniprot
Match: D8LJK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK4_ECTSI) HSP 1 Score: 473 bits (1217), Expect = 6.520e-158 Identity = 302/500 (60.40%), Postives = 351/500 (70.20%), Query Frame = 3
Query: 72 ILEGVLLVLIGVLSPFWLPLPLYRVREAVAGQRRRLRLLDRS--------AGDXXXXXXXXXXXXXXXXXIDRKTE--AEKGLMQQDANAAAAAAAVQGLPDLGRRYLDFMAQALGQGHDAAAAAVTAPYLHGGLPRYSGGHPDNFFIDVSSFDEVVLTTEWEADGFLAACMVFAIVTAEARRAPVAPGGTKRPYPLRTVIVGKGKAAQAQEALKVMRQTELIPPDCHIDVIE-GCGLTGADCHLQGLVGGVGGEGKXXXXXXXXXXDNRSRSFLGSCSMLLLRSPVLRTIFRRWGWRSGGRRDLHLARCVFSAQRRGSTFDHVDLFVSGGFSGVFQGEGGESEGPQGIRRRRQRRRSSRGEGKLSRGEVEEAMAAVNRVFVVQLDDLVRSYGFPRAIAPDRTPTLSAAMAGARGVLPACLRRVIAASNHLALTEFPDKVAAASAAGRYANEELRVTASSIAAAAVAEEPGIGRGRVAELGACMADLIASDFEALEAAGL 1538
+LEGVL++LIGVLS FWLPLPLYR+REAV +RRRLRLL +S G +D +T A + L QD +AAAA+ G PDLGRRYLDF+AQALGQ H AAAAA+ AP GLPR GGHP+ F+DVS++DEVVLTTEWEADG LAAC++F++VTAE +RAP A GTKRPYPLRT+IVG+GKA+QA+EAL+ MR+T+L+PPDC +DV+E G G + + XXXXXXXXXXD RSFLGSCSMLLL +LR+ R W SG RR L G G G S +RR+ RR S+ G+ +LSR +VEEA+A VNRV VVQL+DLVR YGFPRAIAPDRTPTL+AA+AGARGVLP+CLRR IAASNHLALTEFPDKVA+A AGRYANEELRVTASSIAAAAVAEEPG+GRGRVAELGACMADLIASDFEALE AGL
Sbjct: 12 VLEGVLVLLIGVLSTFWLPLPLYRLREAVTCRRRRLRLLRQSEESGGKVDVGADSKAIRPVGGRGAGNGGVDGQTTEGAAESLTGQDPKSAAAAS--DGFPDLGRRYLDFLAQALGQSHSAAAAAIAAPDRRTGLPRNGGGHPEGCFVDVSAYDEVVLTTEWEADGLLAACLLFSVVTAETKRAPFASDGTKRPYPLRTLIVGEGKASQAREALEAMRRTKLVPPDCRVDVLEPGEGAAKGEKRREDRGIEXXXXXXXXXXXXXXXXDGVWRSFLGSCSMLLL---LLRSTLR---WLSGRRRGL----------------------ARGQGEGXXXXXSGHS-----LRRQWHRRPSAGGDEELSREDVEEALARVNRVLVVQLEDLVRPYGFPRAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIKAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGL 476
BLAST of mRNA_S-firma_F_contig1020.316.1 vs. uniprot
Match: A0A6H5KHY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY3_9PHAE) HSP 1 Score: 365 bits (937), Expect = 4.460e-117 Identity = 230/386 (59.59%), Postives = 269/386 (69.69%), Query Frame = 3
Query: 498 FDEVVLTTEWEADGFLAACMVFAIVTAEARRAPVAPGGTKRPYPLRTVIVGKGKAAQAQEALKVMRQTELIPPDCHIDVIEGCGLTGADCHLQGLVGGVGGEGKXXXXXXXXXXDNRSRSFLGSCSMLLLRSPVLRTIF-RRWGW------------RSGGRRDLHLA---------------RCVFSAQ-------RRG-STFDHVDLFVSGGFSGVFQG--EGGESEGP-QGIRRRRQRRRSSRGEGKLSRGEVEEAMAAVNRVFVVQLDDLVRSYGFPRAIAPDRTPTLSAAMAGARGVLPACLRRVIAASNHLALTEFPDKVAAASAAGRYANEELRVTASSIAAAAVAEEPGIGRGRVAELGACMADLIASDFEALEAAGL 1538
+D+VVLTTEWEADG LAAC++F++VTAE +RAP A GTKRPYPLR +IVG+GKA QA+EAL+ MR+T LIPPDC +DV+E G A + G+ E + D RSFLGSCS+LLL LR +F RR G R +R L +A R + + RRG S + H+D+FVSGGFSG F+G EGGE P R +R RR S+ G+ +LSR +VEEA+A VNRV VVQL+DLVR YGFP AIAPDRTPTL+AA+AGARGVLP+CLRR IAASNHLALTEFPDKVA+A AGRYANEELRVTASSIAAAAVAEEPG+GRGRVAELGACMADLIASDFEALE AGL
Sbjct: 3 YDQVVLTTEWEADGLLAACLLFSVVTAETKRAPFASDGTKRPYPLRNLIVGEGKANQAREALEAMRRTNLIPPDCRVDVLEA-GEGAAKGEKRQEDRGIEAEEEEEGGG-----DGVWRSFLGSCSVLLLLRSTLRWLFGRRRGLARTKLREVFNATRKDNQRVLVIALKPPRDLVEVLLESGRASWWGRAMGRGGGRRGCSRYKHIDMFVSGGFSGAFRGQREGGECSAPGHSPREQRHRRPSAGGDEELSRDDVEEALARVNRVLVVQLEDLVRPYGFPTAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIEAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGL 382
BLAST of mRNA_S-firma_F_contig1020.316.1 vs. uniprot
Match: A0A6H5JGT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT4_9PHAE) HSP 1 Score: 139 bits (349), Expect = 3.530e-35 Identity = 89/169 (52.66%), Postives = 104/169 (61.54%), Query Frame = 3
Query: 21 MRWEGTGAS-LVLLLWCGILEGVLLVLIGVLSPFWLPLPLYRVREAVAGQRRRLRLLDRS---------AGDXXXXXXXXXXXXXXXXXIDRKTE-AEKGLMQQDANAAAAAAAVQGLPDLGRRYLDFMAQALGQGHDAAAAAVTAPYLHGGLPRYSGGHPDNFFIDVS 494
M +G G S LVLLLW +LEGVL++LIGVLS FWLPLPLYR+REAV +RRRLRLL +S D E A + L +Q+ +AAAAA G PDLGRRYLDF+AQALGQ H AAAAA+ AP GLPR GGHP+ F+DVS
Sbjct: 1 MESDGKGGSALVLLLWYKVLEGVLVLLIGVLSTFWLPLPLYRLREAVTCRRRRLRLLRQSEECGGKAGGGADSKAIRPVGGREAGNGGGHGHTNEGAAESLTRQEPKSAAAAA--DGFPDLGRRYLDFLAQALGQSHSAAAAAIAAPDRRPGLPRNGGGHPEGCFVDVS 167 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1020.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1020.316.1 >prot_S-firma_F_contig1020.316.1 ID=prot_S-firma_F_contig1020.316.1|Name=mRNA_S-firma_F_contig1020.316.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=506bp MRWEGTGASLVLLLWCGILEGVLLVLIGVLSPFWLPLPLYRVREAVAGQRback to top mRNA from alignment at S-firma_F_contig1020:244..5806- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1020.316.1 ID=mRNA_S-firma_F_contig1020.316.1|Name=mRNA_S-firma_F_contig1020.316.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5563bp|location=Sequence derived from alignment at S-firma_F_contig1020:244..5806- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1020:244..5806- >mRNA_S-firma_F_contig1020.316.1 ID=mRNA_S-firma_F_contig1020.316.1|Name=mRNA_S-firma_F_contig1020.316.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3036bp|location=Sequence derived from alignment at S-firma_F_contig1020:244..5806- (Sphaerotrichia firma ET2_F female)back to top |