mRNA_S-firma_F_contig10157.266.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A1E7FDY8_9STRA (Ternary protein-Dna Complex1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDY8_9STRA) HSP 1 Score: 234 bits (596), Expect = 3.040e-75 Identity = 108/156 (69.23%), Postives = 122/156 (78.21%), Query Frame = 1
Query: 253 RGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRR 720
R S GKWT +EDE+LR AV + GKSWKKIA L GRTDVQCLHRWQKVLKPGL+KGPWT +ED+ VI+LV +G KKWS IA L GRLGKQCRERWYNHLNPDI KG W +EDK +I E N+WA IA+ + GRTDNAIKNRWNSTL+R
Sbjct: 1 RRASMGKWTEEEDELLREAVANYGGKSWKKIAGRLSGRTDVQCLHRWQKVLKPGLIKGPWTQEEDSKVIELVKMHGNKKWSFIARQLKGRLGKQCRERWYNHLNPDINKGEWTNDEDKALIQAHDELGNRWAEIAKRLSGRTDNAIKNRWNSTLKR 156
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7S4EQR6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQR6_9STRA) HSP 1 Score: 238 bits (606), Expect = 1.060e-72 Identity = 108/157 (68.79%), Postives = 125/157 (79.62%), Query Frame = 1
Query: 253 RGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRRL 723
R S GKWT +ED++LR AV + GKSWKKIA L GRTDVQCLHRWQKVLKPGL+KGPWTP+EDA V++LV +G KKWS IA L GRLGKQCRERWYNHLNPDI KG W +EDK++I E N+WA IA+ + GRTDNAIKNRWNSTL+R+
Sbjct: 163 RRASMGKWTEEEDDLLREAVANYGGKSWKKIAGRLTGRTDVQCLHRWQKVLKPGLIKGPWTPEEDAKVVELVKVHGNKKWSFIARQLKGRLGKQCRERWYNHLNPDINKGEWTNDEDKLLIQAHSELGNRWAEIAKRLKGRTDNAIKNRWNSTLKRI 319
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A448ZBA0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBA0_9STRA) HSP 1 Score: 239 bits (609), Expect = 1.320e-71 Identity = 110/157 (70.06%), Postives = 124/157 (78.98%), Query Frame = 1
Query: 253 RGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRRL 723
R S GKWT +EDE+LR AV + GKSWKKIA L GRTDVQCLHRWQKVLKPGL+KGPWTP+ED VI+LV +G KKWS IA L GRLGKQCRERWYNHLNPDI KG W EEDK++I E N+WA IA+ + GRTDNAIKNRWNSTL+R+
Sbjct: 341 RRASMGKWTEEEDELLREAVADYGGKSWKKIAGRLTGRTDVQCLHRWQKVLKPGLIKGPWTPEEDGKVIELVKVHGNKKWSFIARQLKGRLGKQCRERWYNHLNPDINKGEWTNEEDKILIQAHSELGNRWAEIAKRLSGRTDNAIKNRWNSTLKRI 497
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7S4UQ57_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4UQ57_9EUKA) HSP 1 Score: 229 bits (583), Expect = 4.830e-71 Identity = 105/159 (66.04%), Postives = 125/159 (78.62%), Query Frame = 1
Query: 244 SKPRGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRR 720
+KP S+G WTP+ED+ LR AV +H+GKSWKKIA L+GR D QCLHRWQKVL P LVKGPWT +ED LVI+LV ++G KKWS IA +L GR+GKQCRERW+NHLNPDI+KG W EE+ +I Q E N+WA IA+ + GRTDNAIKN WNSTLRR
Sbjct: 23 TKPMRASKGNWTPEEDQKLREAVAKHNGKSWKKIAEHLEGREDTQCLHRWQKVLNPKLVKGPWTKEEDELVIELVKQHGPKKWSLIAEHLKGRIGKQCRERWHNHLNPDIKKGQWTKEEETIIRQKQKELGNRWAEIAKFLPGRTDNAIKNYWNSTLRR 181
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7J7Q8H4_9CHLO (Homeodomain-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q8H4_9CHLO) HSP 1 Score: 225 bits (574), Expect = 1.790e-70 Identity = 102/159 (64.15%), Postives = 124/159 (77.99%), Query Frame = 1
Query: 256 GNSRGK-WTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRRLTE 729
G+S GK WTP+EDEILR AV H+G++WKKIA QGRTDVQCLHRWQKVL P L+KG WT +ED+L++ LVAE+G KKWS IA +L GR+GKQCRERW+NHLNPDI + W EED+ ++ L N+WA +AR + GRTDNAIKN WNSTL+R E
Sbjct: 74 GSSSGKGWTPEEDEILRRAVALHEGRNWKKIATYFQGRTDVQCLHRWQKVLNPELIKGCWTKEEDSLIVGLVAEHGAKKWSLIATSLPGRIGKQCRERWHNHLNPDINRAEWTREEDEQLVMLHASIGNQWAQLARNMPGRTDNAIKNHWNSTLKRRVE 232
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7S2MM62_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MM62_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.880e-70 Identity = 109/163 (66.87%), Postives = 128/163 (78.53%), Query Frame = 1
Query: 238 PTSKP-RGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRRL 723
PTS+ R S+G WT EDE LR AV H+GK+WK+IA L GRTDVQCLHRWQKVLKPG+VKGPWT +ED VI LV+++G KKWS IAA L GRLGKQCRERW+NHLNPDI+K W EEDK+I+ + NKWA I+R + GRTDNAIKNRWNSTL+R+
Sbjct: 79 PTSESKRRPSKGNWTLHEDETLRNAVGTHEGKNWKRIAECLAGRTDVQCLHRWQKVLKPGIVKGPWTEEEDQKVITLVSKHGCKKWSFIAAQLEGRLGKQCRERWFNHLNPDIKKDAWTAEEDKIIVNAHGKLGNKWAEISRILPGRTDNAIKNRWNSTLQRV 241
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7S2VAB5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAB5_9STRA) HSP 1 Score: 234 bits (596), Expect = 2.730e-70 Identity = 106/159 (66.67%), Postives = 127/159 (79.87%), Query Frame = 1
Query: 247 KPRGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRRL 723
K R S GKW+ +EDE LR AV GK+WKKIA+ L+GR+DVQCLHRWQKVL+PGL+KGPWTP+EDA V++LV +GTKKWS IA L+GRLGKQCRERWYNHL+P I KG W EEDK+++ E N+WA IA+ + GRTDNAIKNRWNSTL+RL
Sbjct: 279 KKRRASMGKWSEEEDECLRLAVKEFGGKNWKKIASRLKGRSDVQCLHRWQKVLRPGLIKGPWTPEEDATVVRLVKVHGTKKWSLIARQLNGRLGKQCRERWYNHLDPSINKGEWTQEEDKMLVDAHEELGNRWAEIAKRLPGRTDNAIKNRWNSTLKRL 437
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7S3CAI6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CAI6_9CHLO) HSP 1 Score: 224 bits (571), Expect = 6.360e-70 Identity = 104/168 (61.90%), Postives = 128/168 (76.19%), Query Frame = 1
Query: 226 VVGLPTSKPRGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRRLTE 729
VVG + R +S+G WT +EDEILR AV + +GK+WKKIA R+DVQCLHRWQKVL P L+KGPWT +ED +I LV E+G KKWS IA NL GR+GKQCRERW+NHLNPDI++ PW +EDKV+I +F NKWA I++ + GRTDNAIKNRWNST++R E
Sbjct: 91 VVGKTGAPKRKSSKGGWTSEEDEILRRAVQQCEGKNWKKIAEYFTDRSDVQCLHRWQKVLNPDLIKGPWTKEEDEKIIALVKEHGPKKWSVIADNLPGRIGKQCRERWHNHLNPDIKQDPWSVDEDKVLIDAHKKFGNKWAEISKLLPGRTDNAIKNRWNSTMKRKYE 258
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7S2LA83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA83_9STRA) HSP 1 Score: 221 bits (563), Expect = 1.250e-69 Identity = 105/156 (67.31%), Postives = 122/156 (78.21%), Query Frame = 1
Query: 262 SRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQG--RTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRRL 723
S GKWTP ED LR AV + K+WKKIAA+L G R+DVQCLHRWQKVLKPGL+KG WT +EDALV LV E+G KKWS IA +L GRLGKQCRERWYNHLNPDI++ W EEDK+IIA + N+WA +A+ + GRTDNAIKNRWNSTL R+
Sbjct: 19 SMGKWTPSEDTALRIAVEANHAKNWKKIAATLPGQNRSDVQCLHRWQKVLKPGLIKGSWTKEEDALVTSLVQEHGQKKWSFIAKHLKGRLGKQCRERWYNHLNPDIKRCDWSEEEDKIIIAAHGQMGNRWAAMAKLLPGRTDNAIKNRWNSTLSRV 174
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Match: A0A7S0CT81_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CT81_MICPS) HSP 1 Score: 223 bits (568), Expect = 2.630e-69 Identity = 104/166 (62.65%), Postives = 126/166 (75.90%), Query Frame = 1
Query: 223 GVVGLPTSKPRGNSRGKWTPQEDEILRAAVIRHDGKSWKKIAASLQGRTDVQCLHRWQKVLKPGLVKGPWTPQEDALVIKLVAEYGTKKWSQIAANLHGRLGKQCRERWYNHLNPDIRKGPWECEEDKVIIALQVEFRNKWALIAREIVGRTDNAIKNRWNSTLRR 720
G +G PT R +++G WTP ED+ILR AV ++ GK+WKKIA + RTDVQCLHRWQKVL P LVKGPWT +EDA +I+LV + G K+WS+IA L GR+GKQCRERWYNHLNPDI++ W EED+ +I F NKWA IA+ VGRTDNAIKN WNSTL+R
Sbjct: 13 GRIGGPT---RRSAKGGWTPAEDDILRRAVAQYKGKNWKKIAEYFEERTDVQCLHRWQKVLNPELVKGPWTKEEDAKIIELVGQLGAKQWSKIAQQLPGRIGKQCRERWYNHLNPDIKREEWSREEDRALIIAHRAFGNKWAEIAKTFVGRTDNAIKNHWNSTLKR 175 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10157.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10157.266.1 >prot_S-firma_F_contig10157.266.1 ID=prot_S-firma_F_contig10157.266.1|Name=mRNA_S-firma_F_contig10157.266.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=243bp PPLPALTTHSHHHHQMNSVPPPKVVPPVPLPAPSVPIMPPVMHSSAFPRPback to top mRNA from alignment at S-firma_F_contig10157:2588..3316- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10157.266.1 ID=mRNA_S-firma_F_contig10157.266.1|Name=mRNA_S-firma_F_contig10157.266.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=729bp|location=Sequence derived from alignment at S-firma_F_contig10157:2588..3316- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10157:2588..3316- >mRNA_S-firma_F_contig10157.266.1 ID=mRNA_S-firma_F_contig10157.266.1|Name=mRNA_S-firma_F_contig10157.266.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1458bp|location=Sequence derived from alignment at S-firma_F_contig10157:2588..3316- (Sphaerotrichia firma ET2_F female)back to top |