mRNA_S-firma_F_contig10108.200.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10108.200.1
Unique NamemRNA_S-firma_F_contig10108.200.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10108.200.1 vs. uniprot
Match: A0A6H5JSM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.490e-11
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 2 
Query:  248 GYYARKSCGEMGAGLDVEKAIAESIRAKTLEFEREREAYIDAAKQLL 388
            G +A +S  E+G GLD +K +AESIRAKTLEFE EREAYIDAAKQLL
Sbjct:    6 GDFAWESVEELGVGLDAQKTLAESIRAKTLEFESEREAYIDAAKQLL 52
[Close]
BLAST of mRNA_S-firma_F_contig10108.200.1 vs. uniprot
Match: D8LSK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.040e-10
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:  248 GYYARKSCGEMGAGLDVEKAIAESIRAKTLEFEREREAYIDAAKQLL 388
            G +A +S  E+G GLD +K +AESIRAKTLEFEREREAYIDAAKQLL
Sbjct:    6 GDFAWESVEELGVGLDAQKTLAESIRAKTLEFEREREAYIDAAKQLL 52
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10108.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSM9_9PHAE6.490e-1172.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK9_ECTSI1.040e-1074.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10108contigS-firma_F_contig10108:1131..2547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002010.1
Exons2
Model size571
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10108.200.1prot_S-firma_F_contig10108.200.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10108 1131..2318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.1619377-CDS-S-firma_F_contig10108:1130..13701622815538.1619377-CDS-S-firma_F_contig10108:1130..1370Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10108 1131..1370 -
1696949399.5418324-CDS-S-firma_F_contig10108:1130..13701696949399.5418324-CDS-S-firma_F_contig10108:1130..1370Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10108 1131..1370 -
1622815538.1787937-CDS-S-firma_F_contig10108:2216..23181622815538.1787937-CDS-S-firma_F_contig10108:2216..2318Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10108 2217..2318 -
1696949399.5583785-CDS-S-firma_F_contig10108:2216..23181696949399.5583785-CDS-S-firma_F_contig10108:2216..2318Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10108 2217..2318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.1924758-UTR-S-firma_F_contig10108:2318..25471622815538.1924758-UTR-S-firma_F_contig10108:2318..2547Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10108 2319..2547 -
1696949399.5693076-UTR-S-firma_F_contig10108:2318..25471696949399.5693076-UTR-S-firma_F_contig10108:2318..2547Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10108 2319..2547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10108.200.1

>prot_S-firma_F_contig10108.200.1 ID=prot_S-firma_F_contig10108.200.1|Name=mRNA_S-firma_F_contig10108.200.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=114bp
MERQDRGYYARKSCGEMGAGLDVEKAIAESIRAKTLEFEREREAYIDAAK
QLLAPPPPPPRPITEGSSGGNTGVGGEGEGIRGGAAETRRNDGDDGGHHQ
QHRQDRHGLRRPRP
back to top

mRNA from alignment at S-firma_F_contig10108:1131..2547-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10108.200.1 ID=mRNA_S-firma_F_contig10108.200.1|Name=mRNA_S-firma_F_contig10108.200.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1417bp|location=Sequence derived from alignment at S-firma_F_contig10108:1131..2547- (Sphaerotrichia firma ET2_F female)
GTTGTGGGTTCGTGCGGACAGCTGTGGGTTGTGGACTGACCGGAGCGAAG
AAGGAAGCCCAGCACGCCTTCGTGCTGGTGCACTGCACTCTACGTAGCTG
TATTTCTGTGTTGTCTGTTTTCAAATACACACCACCCTGTGCGACTTGGA
CAGCACTGAGCAGATTCAAAAAATCCCAACGGTGACTGGCAGACGCAGCA
GAGAGGTAGAGAGAGGAGACGCAAAAGCCATGGAGCGGCAGGATCGTGGA
TACTACGCTAGGAAGAGCTGTGGAGAGATGGGGGCCGGGCTGGACGTGGA
AAAGGCCATCGCGGAGTCAATCAGAGCAAAGGTAGGCCAATGATGCTGCT
CCAACCCCCCCACGCCTCTGTGTTACCAGGCGCTCTCTTCTGCTTGACTA
ACAGAGTAGGTCCTAGACAGCTGTAAGCCAATCCCGGTGGCGTCGGTAAG
AAGCGCCCTCCGTAAGTTTGTACAGGGCTCAGGTTGGATGGATGCTCTGG
TAGCAGCACCGACGTGGTGCCCTCGCCCGACATCAACCCACAACGGCGGT
GCCCCAACTGCCGGCCTGTCGCGGGGTGGAAATGTGTATTCTACCAGCAG
CTGCGTATTGTAGCAGTGTAGCGAGTTGTAGTGAGGAGGTTCGGGCTGTG
CTTCATGATAGCGACATCCACCGTCTGTATAGCTGCCTGCGCTGCTGCGT
TGTGGTTTCCTTTCTAGAAAGTGGACCGCCAAGCAATCGGCGCTATATAG
AAGTGTACACCTGAAACCTGAAAGCAATCGATTGCTGCTGCAACATGTCC
GACTCTAGGCAGCAGGTCATGCTGTAAACAGCAGCGCCCATTTATTGACA
TACACCCAGAGCTAGGCATGTAGCTCTGCATGGCTGTCTGTCGCCGTAGA
CCACATGCTGCATCGCGCTCACTGCTGCATGTCATATCGTGATCCCGTGG
GCTTGGCATTTACGTACGTTCTCTCAACTCCGTGTTTTGCCGCCCGACAC
ACCCAACCACCGGGTTCCTGTATGCCACTGTTGCTGTTGTGTTGCCTGTT
GGCTGTTGACTCTTCGCCAACTTTTATGGTGTCATCTGTCAGACCTCCTA
CGTATCCAAAAGAAAGTGCCGTTTTTCATTTGGACGCCGTTGCGGTGATC
CAACTTCACCAAATACCAAAAACACAGACGCTGGAGTTCGAGAGGGAACG
GGAGGCATACATCGACGCCGCCAAACAACTGCTGGCACCACCGCCACCGC
CACCACGGCCAATAACAGAGGGTTCCTCCGGAGGAAATACCGGCGTAGGC
GGCGAAGGCGAAGGAATCCGAGGCGGGGCCGCAGAGACTCGGCGCAACGA
CGGGGATGATGGCGGCCATCACCAACAGCACCGGCAAGACCGCCACGGGC
TGCGGCGGCCGCGGCCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10108:1131..2547-

>mRNA_S-firma_F_contig10108.200.1 ID=mRNA_S-firma_F_contig10108.200.1|Name=mRNA_S-firma_F_contig10108.200.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_F_contig10108:1131..2547- (Sphaerotrichia firma ET2_F female)
ATGGAGCGGCAGGATCGTGGATACTACGCTAGGAAGAGCTGTGGAGAGAT
GGGGGCCGGGCTGGACGTGGAAAAGGCCATCGCGGAGTCAATCAGAGCAA
AGATGGAGCGGCAGGATCGTGGATACTACGCTAGGAAGAGCTGTGGAGAG
ATGGGGGCCGGGCTGGACGTGGAAAAGGCCATCGCGGAGTCAATCAGAGC
AAAGACGCTGGAGTTCGAGAGGGAACGGGAGGCATACATCGACGCCGCCA
AACAACTGCTGGCACCACCGCCACCGCCACCACGGCCAATAACAGAGGGT
TCCTCCGGAGGAAATACCGGCGTAGGCGGCGAAGGCGAAGGAATCCGAGG
CGGGGCCGCAGAGACTCGGCGCAACGACGGGGATGATGGCGGCCATCACC
AACAGCACCGGCAAGACCGCCACGGGCTGCGGCGGCCGCGGCCGACGCTG
GAGTTCGAGAGGGAACGGGAGGCATACATCGACGCCGCCAAACAACTGCT
GGCACCACCGCCACCGCCACCACGGCCAATAACAGAGGGTTCCTCCGGAG
GAAATACCGGCGTAGGCGGCGAAGGCGAAGGAATCCGAGGCGGGGCCGCA
GAGACTCGGCGCAACGACGGGGATGATGGCGGCCATCACCAACAGCACCG
GCAAGACCGCCACGGGCTGCGGCGGCCGCGGCCG
back to top